Wall clock time and date at job start Tue Mar 31 2020 21:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47620 * 2 1 4 4 N 1.46497 * 109.46114 * 303.59508 * 3 2 1 5 5 C 1.36941 * 120.00274 * 295.44867 * 4 3 2 6 6 H 1.07999 * 119.99662 * 5.32033 * 5 4 3 7 7 C 1.38806 * 120.00276 * 185.32634 * 5 4 3 8 8 N 1.31622 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99999 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47036 * 89.99847 * 9 7 5 11 11 H 1.48505 * 109.47289 * 209.99537 * 9 7 5 12 12 H 1.48498 * 109.47456 * 330.00061 * 9 7 5 13 13 C 1.53040 * 109.46471 * 183.62230 * 3 2 1 14 14 C 1.53187 * 109.31617 * 178.63066 * 13 3 2 15 15 N 1.46927 * 108.77495 * 54.63348 * 14 13 3 16 16 C 1.34785 * 120.62960 * 126.37390 * 15 14 13 17 17 O 1.21601 * 119.99809 * 176.15763 * 16 15 14 18 18 C 1.47394 * 119.99780 * 356.42873 * 16 15 14 19 19 C 1.37363 * 128.56736 * 28.91639 * 18 16 15 20 20 O 1.33496 * 106.34026 * 179.89016 * 19 18 16 21 21 N 1.20658 * 113.15821 * 0.41373 * 20 19 18 22 22 C 1.30018 * 112.29998 * 359.73957 * 21 20 19 23 23 C 1.50699 * 127.33399 * 180.02562 * 22 21 20 24 24 O 1.42902 * 109.47150 * 269.97574 * 23 22 21 25 25 C 1.42903 * 114.00337 * 179.97438 * 24 23 22 26 26 C 1.46922 * 118.73947 * 306.64092 * 15 14 13 27 27 C 1.52765 * 109.00635 * 53.31212 * 26 15 14 28 28 H 1.08996 * 109.46800 * 52.46693 * 1 2 3 29 29 H 1.08996 * 109.47191 * 172.47672 * 1 2 3 30 30 H 1.09000 * 109.46309 * 292.47633 * 1 2 3 31 31 H 1.09000 * 109.46807 * 240.00137 * 2 1 3 32 32 H 1.09002 * 109.47388 * 120.00519 * 2 1 3 33 33 H 0.97002 * 120.00189 * 115.44581 * 4 3 2 34 34 H 0.96997 * 120.00302 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.49781 * 58.67266 * 13 3 2 36 36 H 1.09007 * 109.49728 * 298.57843 * 13 3 2 37 37 H 1.09000 * 109.58654 * 294.84557 * 14 13 3 38 38 H 1.09004 * 109.58868 * 174.42264 * 14 13 3 39 39 H 1.07998 * 126.82899 * 0.02562 * 19 18 16 40 40 H 1.08999 * 109.47396 * 29.97677 * 23 22 21 41 41 H 1.08995 * 109.47071 * 149.97540 * 23 22 21 42 42 H 1.08999 * 109.46555 * 59.99739 * 25 24 23 43 43 H 1.08993 * 109.47765 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.46980 * 300.00440 * 25 24 23 45 45 H 1.09003 * 109.58799 * 173.14327 * 26 15 14 46 46 H 1.09000 * 109.59055 * 293.57398 * 26 15 14 47 47 H 1.09001 * 109.56713 * 185.54939 * 27 26 15 48 48 H 1.09001 * 109.35656 * 65.49785 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4823 2.1574 -1.1506 5 6 1.8137 1.7725 -2.4223 6 1 2.4165 0.8903 -2.5796 7 6 1.3750 2.5162 -3.5091 8 7 0.6400 3.5912 -3.3174 9 14 1.8278 1.9916 -5.2438 10 1 0.7878 1.0713 -5.7699 11 1 1.9155 3.1900 -6.1164 12 1 3.1398 1.2964 -5.2242 13 6 3.5678 1.4431 -0.0912 14 6 4.0727 2.8889 -0.1254 15 7 3.5375 3.6045 1.0409 16 6 4.3617 4.2607 1.8816 17 8 3.9015 4.9069 2.8031 18 6 5.8206 4.1997 1.6804 19 6 6.5172 4.0337 0.5082 20 8 7.8114 4.0465 0.8353 21 7 8.0003 4.1860 2.0189 22 6 6.8898 4.2953 2.6862 23 6 6.7317 4.4811 4.1733 24 8 6.6477 3.2029 4.8068 25 6 6.4960 3.2664 6.2263 26 6 2.0875 3.5862 1.2767 27 6 1.6042 2.1370 1.2921 28 1 -0.3633 0.6261 -0.8149 29 1 -0.3633 -1.0188 -0.1345 30 1 -0.3632 0.3929 0.9496 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8781 2.9034 -1.0116 34 1 0.3332 4.1107 -4.0769 35 1 3.8782 0.9276 -1.0001 36 1 3.9843 0.9328 0.7774 37 1 3.7311 3.3737 -1.0399 38 1 5.1622 2.8964 -0.0904 39 1 6.1007 3.9182 -0.4816 40 1 7.5913 5.0249 4.5650 41 1 5.8218 5.0466 4.3741 42 1 5.5814 3.8070 6.4700 43 1 6.4404 2.2561 6.6314 44 1 7.3511 3.7850 6.6602 45 1 1.8674 4.0535 2.2365 46 1 1.5806 4.1289 0.4788 47 1 0.5170 2.1156 1.3678 48 1 2.0392 1.6202 2.1476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273795591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:37 Heat of formation + Delta-G solvation = -5.552200 kcal Electronic energy + Delta-G solvation = -31060.358270 eV Core-core repulsion = 26926.352296 eV Total energy + Delta-G solvation = -4134.005974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.11351 -41.37074 -39.45615 -38.94272 -36.34194 -35.18547 -34.48131 -33.56716 -31.98490 -31.48682 -30.74718 -29.38523 -27.10396 -26.71984 -25.62793 -25.44270 -24.02651 -22.96969 -22.28996 -21.23818 -19.79706 -18.96170 -18.89735 -18.54039 -18.16312 -17.36154 -17.29314 -16.78382 -16.55950 -16.21328 -16.09543 -15.69578 -15.38131 -15.30894 -15.07639 -14.76697 -14.50001 -14.27130 -13.91342 -13.61741 -13.58922 -13.22419 -13.01193 -12.86331 -12.78679 -12.59290 -12.56647 -12.52950 -12.24355 -12.11814 -12.05087 -11.77721 -11.54856 -11.37696 -11.31411 -11.23301 -10.95148 -10.81365 -10.78872 -10.61658 -9.65176 -8.79752 -7.78774 -5.03645 0.00796 0.47282 1.53326 1.56542 1.60589 1.61890 1.91249 2.17231 2.57784 2.66691 3.03137 3.29320 3.52104 3.55698 3.76282 3.87165 3.91341 4.01616 4.07237 4.20773 4.22207 4.27809 4.40637 4.46489 4.48122 4.53164 4.58668 4.62666 4.65393 4.73304 4.78513 4.80225 4.83588 4.86204 5.08704 5.14154 5.20906 5.28014 5.37007 5.40659 5.57247 5.65876 5.68165 5.78322 5.99390 6.35014 6.43003 6.96989 7.03946 7.51251 8.26874 8.51310 9.44428 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.003621 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.236314 B = 7730.503627 C = 8755.950929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.196 3.804 4 N -0.715 5.715 5 C -0.201 4.201 6 H 0.076 0.924 7 C -0.070 4.070 8 N -0.968 5.968 9 Si 0.949 3.051 10 H -0.302 1.302 11 H -0.307 1.307 12 H -0.267 1.267 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.586 5.586 16 C 0.593 3.407 17 O -0.572 6.572 18 C -0.255 4.255 19 C 0.011 3.989 20 O 0.112 5.888 21 N -0.352 5.352 22 C 0.050 3.950 23 C 0.141 3.859 24 O -0.410 6.410 25 C 0.027 3.973 26 C 0.123 3.877 27 C -0.121 4.121 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.372 0.628 34 H 0.243 0.757 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.270 0.730 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.081 0.919 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.079 -2.167 13.751 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.106 3.894 4 N -0.355 5.355 5 C -0.334 4.334 6 H 0.094 0.906 7 C -0.262 4.262 8 N -0.620 5.620 9 Si 0.781 3.219 10 H -0.230 1.230 11 H -0.235 1.235 12 H -0.191 1.191 13 C -0.170 4.170 14 C -0.024 4.024 15 N -0.316 5.316 16 C 0.381 3.619 17 O -0.453 6.453 18 C -0.263 4.263 19 C -0.070 4.070 20 O 0.048 5.952 21 N -0.057 5.057 22 C -0.113 4.113 23 C 0.064 3.936 24 O -0.329 6.329 25 C -0.069 4.069 26 C 0.001 3.999 27 C -0.160 4.160 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.205 0.795 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.285 0.715 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.222 -2.095 14.340 18.958 hybrid contribution -1.370 0.415 -1.298 1.933 sum 10.852 -1.680 13.042 17.049 Atomic orbital electron populations 1.21594 0.96206 1.00456 1.01166 1.21878 0.96245 0.97418 1.00545 1.19794 0.91622 0.91393 0.86632 1.42573 1.54816 1.37547 1.00579 1.19336 1.24362 1.05637 0.84027 0.90598 1.25221 1.02481 0.98221 1.00244 1.69785 1.42908 1.19691 1.29583 0.85491 0.78031 0.76071 0.82284 1.23008 1.23466 1.19144 1.22210 0.97339 0.95451 1.01962 1.22337 0.99357 0.93267 0.87445 1.47919 1.07335 1.50189 1.26161 1.17043 0.84296 0.78981 0.81547 1.90715 1.77396 1.43561 1.33645 1.22208 0.95040 1.14831 0.94202 1.27495 0.82159 0.95723 1.01653 1.84592 1.26372 1.65492 1.18709 1.73630 1.23524 1.17941 0.90589 1.24570 0.86801 1.01809 0.98107 1.20622 1.02969 0.86461 0.83579 1.87869 1.94835 1.27758 1.22448 1.22995 1.01068 1.04321 0.78479 1.21421 0.78776 0.97972 1.01742 1.21979 1.01741 0.94506 0.97750 0.94106 0.93415 0.92693 0.93556 0.91573 0.79540 0.94756 0.90750 0.91478 0.90635 0.87723 0.71505 0.89390 0.90072 0.93241 0.87984 0.92073 0.89863 0.92169 0.90073 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.36 71.98 0.67 -3.58 16 2 C -0.12 -3.69 4.82 30.59 0.15 -3.54 16 3 C 0.20 6.27 0.44 3.63 0.00 6.27 16 4 N -0.72 -29.42 3.03 -303.24 -0.92 -30.34 16 5 C -0.20 -9.37 8.55 84.03 0.72 -8.65 16 6 H 0.08 3.42 6.76 -2.91 -0.02 3.40 16 7 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 8 N -0.97 -54.40 13.06 21.65 0.28 -54.12 16 9 Si 0.95 42.73 29.55 68.60 2.03 44.76 16 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 13 C -0.13 -3.74 4.63 30.67 0.14 -3.60 16 14 C 0.10 2.72 5.48 86.36 0.47 3.19 16 15 N -0.59 -17.80 2.98 -823.64 -2.45 -20.25 16 16 C 0.59 18.88 7.68 86.65 0.67 19.54 16 17 O -0.57 -21.19 15.49 -4.03 -0.06 -21.25 16 18 C -0.26 -6.93 6.04 -18.74 -0.11 -7.05 16 19 C 0.01 0.22 10.14 67.61 0.69 0.90 16 20 O 0.11 2.51 11.06 76.96 0.85 3.36 16 21 N -0.35 -9.25 12.01 -44.78 -0.54 -9.79 16 22 C 0.05 1.35 7.21 45.16 0.33 1.68 16 23 C 0.14 3.45 6.46 71.24 0.46 3.91 16 24 O -0.41 -10.49 10.69 -148.98 -1.59 -12.08 16 25 C 0.03 0.45 11.01 113.37 1.25 1.70 16 26 C 0.12 3.89 6.13 86.22 0.53 4.42 16 27 C -0.12 -3.52 4.69 30.53 0.14 -3.38 16 28 H 0.04 1.56 7.27 -2.39 -0.02 1.54 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.51 6.88 -2.39 -0.02 1.50 16 31 H 0.05 1.53 7.55 -2.39 -0.02 1.51 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.37 17.26 6.63 -92.71 -0.62 16.65 16 34 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 35 H 0.07 2.23 7.18 -2.38 -0.02 2.21 16 36 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.08 2.54 7.59 -2.39 -0.02 2.52 16 38 H 0.11 2.26 3.23 -2.38 -0.01 2.25 16 39 H 0.27 3.77 6.03 -2.91 -0.02 3.75 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.08 2.10 7.16 -2.39 -0.02 2.08 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.08 2.64 7.03 -2.39 -0.02 2.62 16 46 H 0.06 2.17 7.03 -2.39 -0.02 2.15 16 47 H 0.08 2.32 6.63 -2.39 -0.02 2.30 16 48 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -64.06 377.76 4.54 -59.51 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.38 Total: 31.49 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 6.57 Total: 8.71 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -3.63 Total: -114.49 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.80 Total: -29.98 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.06 4.54 -59.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273795591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.960 kcal (2) G-P(sol) polarization free energy of solvation -64.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds