Wall clock time and date at job start Tue Mar 31 2020 19:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34334 * 126.43916 * 2 1 4 4 N 1.34480 * 107.66850 * 179.73671 * 3 2 1 5 5 C 1.30257 * 108.69864 * 0.26285 * 4 3 2 6 6 C 1.50703 * 125.61876 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.47057 * 89.97045 * 6 5 4 8 8 C 1.42898 * 113.99940 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47493 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99695 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00553 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00253 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46113 * 325.00130 * 12 11 9 14 14 C 1.53042 * 109.45990 * 84.97051 * 12 11 9 15 15 C 1.53191 * 109.30972 * 58.65547 * 14 12 11 16 16 N 1.46924 * 108.77633 * 54.63583 * 15 14 12 17 17 C 1.36943 * 120.63374 * 126.41194 * 16 15 14 18 18 H 1.07998 * 119.99701 * 209.01588 * 17 16 15 19 19 C 1.38806 * 119.99579 * 29.01844 * 17 16 15 20 20 N 1.31613 * 120.00642 * 15.01139 * 19 17 16 21 21 Si 1.86807 * 119.99730 * 195.01303 * 19 17 16 22 22 H 1.48504 * 109.46887 * 60.00026 * 21 19 17 23 23 H 1.48503 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47030 * 299.99891 * 21 19 17 25 25 C 1.46927 * 118.74084 * 306.38858 * 16 15 14 26 26 H 1.09003 * 109.58799 * 293.68317 * 25 16 15 27 27 C 1.52999 * 109.59013 * 173.39499 * 25 16 15 28 28 C 1.53038 * 109.46000 * 205.02944 * 12 11 9 29 29 O 1.33968 * 108.76427 * 359.97438 * 5 4 3 30 30 H 1.09002 * 109.47241 * 90.00686 * 1 2 3 31 31 H 1.09005 * 109.46682 * 210.00302 * 1 2 3 32 32 H 1.08994 * 109.47725 * 329.99785 * 1 2 3 33 33 H 1.08000 * 126.16974 * 359.97438 * 3 2 1 34 34 H 1.08991 * 109.47355 * 209.97303 * 6 5 4 35 35 H 1.09007 * 109.46936 * 329.97505 * 6 5 4 36 36 H 1.09003 * 109.47433 * 300.00562 * 8 7 6 37 37 H 1.09004 * 109.47378 * 60.00205 * 8 7 6 38 38 H 0.97004 * 119.99472 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.49704 * 178.60295 * 14 12 11 40 40 H 1.09003 * 109.49899 * 298.70818 * 14 12 11 41 41 H 1.08997 * 109.58991 * 174.42044 * 15 14 12 42 42 H 1.08999 * 109.58907 * 294.84915 * 15 14 12 43 43 H 0.97003 * 120.00591 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.46797 * 60.00328 * 27 25 16 45 45 H 1.08998 * 109.47111 * 180.02562 * 27 25 16 46 46 H 1.08996 * 109.47034 * 300.00428 * 27 25 16 47 47 H 1.08999 * 109.49995 * 61.29955 * 28 12 11 48 48 H 1.09005 * 109.49435 * 181.39736 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0807 0.0000 4 7 3.5781 0.6480 0.0059 5 6 3.5765 -0.6546 0.0038 6 6 4.8005 -1.5338 0.0092 7 8 5.1802 -1.8133 1.3582 8 6 6.3368 -2.6440 1.4762 9 6 6.6444 -2.8731 2.9336 10 8 5.9423 -2.3736 3.7873 11 7 7.7001 -3.6321 3.2885 12 6 7.9993 -3.8542 4.7053 13 1 7.7548 -2.9566 5.2732 14 6 7.1662 -5.0285 5.2243 15 6 7.4873 -6.2801 4.4015 16 7 8.9383 -6.5085 4.4346 17 6 9.4454 -7.7195 4.8237 18 1 10.4176 -7.7728 5.2911 19 6 8.7099 -8.8785 4.6174 20 7 7.6794 -8.8671 3.7988 21 14 9.1827 -10.4546 5.5018 22 1 9.1096 -10.2397 6.9694 23 1 8.2464 -11.5399 5.1136 24 1 10.5675 -10.8368 5.1258 25 6 9.8351 -5.4129 4.0417 26 1 9.7050 -5.1966 2.9813 27 6 11.2864 -5.8171 4.3085 28 6 9.4876 -4.1711 4.8685 29 8 2.3075 -1.0839 -0.0029 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.9820 2.1113 -0.0004 34 1 4.5791 -2.4679 -0.5069 35 1 5.6175 -1.0222 -0.4996 36 1 6.1479 -3.6013 0.9903 37 1 7.1857 -2.1552 0.9980 38 1 8.2618 -4.0312 2.6057 39 1 7.4066 -5.2102 6.2718 40 1 6.1063 -4.7927 5.1293 41 1 6.9723 -7.1404 4.8289 42 1 7.1640 -6.1329 3.3710 43 1 7.1652 -9.6769 3.6549 44 1 11.5276 -6.7082 3.7289 45 1 11.9498 -5.0030 4.0168 46 1 11.4155 -6.0281 5.3700 47 1 10.0801 -3.3251 4.5203 48 1 9.7060 -4.3609 5.9194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274635940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:47 Heat of formation + Delta-G solvation = -31.539805 kcal Electronic energy + Delta-G solvation = -29246.756817 eV Core-core repulsion = 25111.623936 eV Total energy + Delta-G solvation = -4135.132881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.57889 -39.87221 -38.29179 -37.23077 -34.98055 -34.28071 -33.05340 -32.38420 -31.43299 -30.09683 -29.48492 -27.36911 -26.34436 -25.38056 -24.90065 -22.57739 -22.09723 -21.37476 -21.00999 -20.54107 -18.66395 -17.78408 -17.42235 -16.85449 -16.54978 -16.36773 -16.17769 -15.37204 -15.09180 -14.92242 -14.68783 -14.36169 -13.98570 -13.79989 -13.72190 -13.47395 -13.38615 -13.12884 -12.96768 -12.71523 -12.50149 -12.22075 -12.13211 -11.83697 -11.55830 -11.44995 -11.22098 -11.00639 -10.79683 -10.70691 -10.63946 -10.43762 -10.16434 -10.10436 -10.06774 -9.69823 -9.54762 -9.31524 -9.00232 -8.62492 -8.47274 -6.66065 -5.79683 -3.23850 1.04835 2.16066 2.40713 2.84855 3.05818 3.36465 3.42906 3.43730 3.66965 4.21903 4.41539 4.46935 4.66938 4.68442 4.77130 4.91784 5.00146 5.01565 5.07550 5.15490 5.22919 5.30117 5.34312 5.39758 5.55324 5.61329 5.66534 5.75956 5.98428 5.99999 6.07921 6.22255 6.29079 6.35809 6.42787 6.55573 6.59100 6.65056 6.77335 6.93757 7.01802 7.02361 7.37149 7.45546 7.67506 7.79897 7.81218 8.44329 8.49660 9.20050 9.83605 10.39745 11.28349 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002169 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.647633 B =12904.487421 C =13715.336897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.040 4.040 3 C -0.046 4.046 4 N -0.460 5.460 5 C 0.191 3.809 6 C 0.160 3.840 7 O -0.356 6.356 8 C 0.044 3.956 9 C 0.514 3.486 10 O -0.527 6.527 11 N -0.711 5.711 12 C 0.157 3.843 13 H 0.073 0.927 14 C -0.155 4.155 15 C 0.176 3.824 16 N -0.587 5.587 17 C -0.250 4.250 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.168 3.832 26 H 0.020 0.980 27 C -0.137 4.137 28 C -0.138 4.138 29 O -0.193 6.193 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.185 0.815 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.401 0.599 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 16.090 -9.840 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.185 4.185 4 N -0.191 5.191 5 C -0.016 4.016 6 C 0.082 3.918 7 O -0.273 6.273 8 C -0.035 4.035 9 C 0.298 3.702 10 O -0.403 6.403 11 N -0.365 5.365 12 C 0.053 3.947 13 H 0.091 0.909 14 C -0.195 4.195 15 C 0.050 3.950 16 N -0.310 5.310 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.061 3.939 26 H 0.037 0.963 27 C -0.195 4.195 28 C -0.178 4.178 29 O -0.079 6.079 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.203 0.797 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.237 0.763 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.195 16.655 -9.091 20.293 hybrid contribution -0.121 -1.514 -0.123 1.524 sum -7.316 15.141 -9.214 19.175 Atomic orbital electron populations 1.20309 0.83779 1.04698 1.03845 1.23579 0.95210 0.84558 1.05999 1.23117 0.87631 1.00475 1.07288 1.70413 1.23278 1.09070 1.16292 1.25546 0.83904 0.89896 1.02238 1.20489 0.89011 0.96483 0.85800 1.88069 1.45868 1.69842 1.23570 1.22308 0.89142 0.96025 0.96066 1.19996 0.81171 0.79088 0.89925 1.90718 1.48331 1.49382 1.51874 1.46011 1.29771 1.51134 1.09544 1.20888 0.95420 0.98232 0.80174 0.90922 1.22572 0.98455 0.97472 1.01010 1.20720 0.84538 0.94028 0.95711 1.44138 1.00530 1.09218 1.77158 1.19124 1.03646 0.83190 1.32029 0.91317 1.25073 0.98997 0.97558 0.97980 1.69993 1.21170 1.27655 1.35995 0.86398 0.77647 0.83155 0.79702 1.21079 1.21731 1.20949 1.20381 0.90955 0.88270 0.94269 0.96261 1.21808 0.95319 1.00389 1.01967 1.22366 0.93942 0.99081 1.02434 1.84403 1.17720 1.36579 1.69248 0.89675 0.90061 0.88787 0.79749 0.89775 0.88438 0.89457 0.89775 0.76310 0.91770 0.92778 0.89516 0.96468 0.93660 0.91922 0.94302 0.92696 0.92550 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.43 36.00 0.38 -0.01 16 2 C -0.04 -0.40 7.39 -35.69 -0.26 -0.67 16 3 C -0.05 -0.49 11.80 -17.77 -0.21 -0.70 16 4 N -0.46 -6.20 11.29 -11.10 -0.13 -6.33 16 5 C 0.19 2.46 7.97 -12.94 -0.10 2.36 16 6 C 0.16 1.66 6.56 36.01 0.24 1.90 16 7 O -0.36 -5.06 9.86 -55.14 -0.54 -5.60 16 8 C 0.04 0.53 6.42 36.00 0.23 0.76 16 9 C 0.51 8.33 7.87 -10.99 -0.09 8.24 16 10 O -0.53 -10.89 16.16 -14.36 -0.23 -11.12 16 11 N -0.71 -10.98 4.26 -53.77 -0.23 -11.20 16 12 C 0.16 2.68 2.78 -67.89 -0.19 2.49 16 13 H 0.07 1.28 7.58 -51.93 -0.39 0.88 16 14 C -0.15 -3.06 5.77 -26.61 -0.15 -3.22 16 15 C 0.18 4.04 5.03 -3.71 -0.02 4.02 16 16 N -0.59 -13.57 2.99 -164.79 -0.49 -14.06 16 17 C -0.25 -6.44 8.60 -15.06 -0.13 -6.57 16 18 H 0.07 1.73 6.21 -52.49 -0.33 1.40 16 19 C 0.00 0.07 4.96 -17.44 -0.09 -0.02 16 20 N -0.90 -25.41 11.14 55.49 0.62 -24.79 16 21 Si 0.90 21.22 29.58 -169.99 -5.03 16.19 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.17 3.14 3.19 -67.61 -0.22 2.92 16 26 H 0.02 0.36 6.65 -51.93 -0.35 0.02 16 27 C -0.14 -2.38 7.94 37.16 0.30 -2.09 16 28 C -0.14 -2.23 5.07 -26.62 -0.13 -2.37 16 29 O -0.19 -2.45 10.78 5.36 0.06 -2.40 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.40 5.57 6.87 -40.82 -0.28 5.29 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 42 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.06 1.18 7.62 -51.93 -0.40 0.79 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.98 7.45 -51.93 -0.39 0.59 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -34.86 389.42 -8.04 -42.90 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.47 Total: 3.49 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.45 Total: 7.05 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.23 Total: -56.38 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.72 Total: -19.12 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.86 -8.04 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274635940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.357 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds