Wall clock time and date at job start Tue Mar 31 2020 19:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34334 * 126.43916 * 2 1 4 4 N 1.34480 * 107.66850 * 179.73671 * 3 2 1 5 5 C 1.30257 * 108.69864 * 0.26285 * 4 3 2 6 6 C 1.50703 * 125.61876 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.47057 * 89.97045 * 6 5 4 8 8 C 1.42898 * 113.99940 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47493 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99695 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00553 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00253 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46113 * 325.00130 * 12 11 9 14 14 C 1.53042 * 109.45990 * 84.97051 * 12 11 9 15 15 C 1.53191 * 109.30972 * 58.65547 * 14 12 11 16 16 N 1.46924 * 108.77633 * 54.63583 * 15 14 12 17 17 C 1.36943 * 120.63374 * 126.41194 * 16 15 14 18 18 H 1.07998 * 119.99701 * 209.01588 * 17 16 15 19 19 C 1.38806 * 119.99579 * 29.01844 * 17 16 15 20 20 N 1.31613 * 120.00642 * 15.01139 * 19 17 16 21 21 Si 1.86807 * 119.99730 * 195.01303 * 19 17 16 22 22 H 1.48504 * 109.46887 * 60.00026 * 21 19 17 23 23 H 1.48503 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47030 * 299.99891 * 21 19 17 25 25 C 1.46927 * 118.74084 * 306.38858 * 16 15 14 26 26 H 1.09003 * 109.58799 * 293.68317 * 25 16 15 27 27 C 1.52999 * 109.59013 * 173.39499 * 25 16 15 28 28 C 1.53038 * 109.46000 * 205.02944 * 12 11 9 29 29 O 1.33968 * 108.76427 * 359.97438 * 5 4 3 30 30 H 1.09002 * 109.47241 * 90.00686 * 1 2 3 31 31 H 1.09005 * 109.46682 * 210.00302 * 1 2 3 32 32 H 1.08994 * 109.47725 * 329.99785 * 1 2 3 33 33 H 1.08000 * 126.16974 * 359.97438 * 3 2 1 34 34 H 1.08991 * 109.47355 * 209.97303 * 6 5 4 35 35 H 1.09007 * 109.46936 * 329.97505 * 6 5 4 36 36 H 1.09003 * 109.47433 * 300.00562 * 8 7 6 37 37 H 1.09004 * 109.47378 * 60.00205 * 8 7 6 38 38 H 0.97004 * 119.99472 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.49704 * 178.60295 * 14 12 11 40 40 H 1.09003 * 109.49899 * 298.70818 * 14 12 11 41 41 H 1.08997 * 109.58991 * 174.42044 * 15 14 12 42 42 H 1.08999 * 109.58907 * 294.84915 * 15 14 12 43 43 H 0.97003 * 120.00591 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.46797 * 60.00328 * 27 25 16 45 45 H 1.08998 * 109.47111 * 180.02562 * 27 25 16 46 46 H 1.08996 * 109.47034 * 300.00428 * 27 25 16 47 47 H 1.08999 * 109.49995 * 61.29955 * 28 12 11 48 48 H 1.09005 * 109.49435 * 181.39736 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0807 0.0000 4 7 3.5781 0.6480 0.0059 5 6 3.5765 -0.6546 0.0038 6 6 4.8005 -1.5338 0.0092 7 8 5.1802 -1.8133 1.3582 8 6 6.3368 -2.6440 1.4762 9 6 6.6444 -2.8731 2.9336 10 8 5.9423 -2.3736 3.7873 11 7 7.7001 -3.6321 3.2885 12 6 7.9993 -3.8542 4.7053 13 1 7.7548 -2.9566 5.2732 14 6 7.1662 -5.0285 5.2243 15 6 7.4873 -6.2801 4.4015 16 7 8.9383 -6.5085 4.4346 17 6 9.4454 -7.7195 4.8237 18 1 10.4176 -7.7728 5.2911 19 6 8.7099 -8.8785 4.6174 20 7 7.6794 -8.8671 3.7988 21 14 9.1827 -10.4546 5.5018 22 1 9.1096 -10.2397 6.9694 23 1 8.2464 -11.5399 5.1136 24 1 10.5675 -10.8368 5.1258 25 6 9.8351 -5.4129 4.0417 26 1 9.7050 -5.1966 2.9813 27 6 11.2864 -5.8171 4.3085 28 6 9.4876 -4.1711 4.8685 29 8 2.3075 -1.0839 -0.0029 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.9820 2.1113 -0.0004 34 1 4.5791 -2.4679 -0.5069 35 1 5.6175 -1.0222 -0.4996 36 1 6.1479 -3.6013 0.9903 37 1 7.1857 -2.1552 0.9980 38 1 8.2618 -4.0312 2.6057 39 1 7.4066 -5.2102 6.2718 40 1 6.1063 -4.7927 5.1293 41 1 6.9723 -7.1404 4.8289 42 1 7.1640 -6.1329 3.3710 43 1 7.1652 -9.6769 3.6549 44 1 11.5276 -6.7082 3.7289 45 1 11.9498 -5.0030 4.0168 46 1 11.4155 -6.0281 5.3700 47 1 10.0801 -3.3251 4.5203 48 1 9.7060 -4.3609 5.9194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274635940.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:46 Heat of formation + Delta-G solvation = -56.997267 kcal Electronic energy + Delta-G solvation = -29247.860736 eV Core-core repulsion = 25111.623936 eV Total energy + Delta-G solvation = -4136.236800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.40942 -41.19210 -39.53449 -38.49722 -35.88425 -35.84492 -34.09018 -33.73730 -32.94570 -31.60181 -30.47266 -28.48007 -27.75123 -26.74076 -26.08053 -23.78070 -23.39596 -22.44860 -22.19429 -21.97207 -20.22646 -18.77580 -18.43250 -18.11694 -17.82882 -17.31493 -17.26974 -17.06121 -16.37433 -15.96634 -15.87520 -15.66465 -15.46720 -15.28981 -14.89244 -14.58473 -14.43693 -14.14496 -14.10994 -13.89176 -13.36234 -13.30968 -13.19391 -13.15927 -12.99237 -12.80702 -12.63707 -12.48528 -12.46221 -12.29413 -12.16852 -11.96754 -11.67740 -11.66716 -11.39583 -10.97929 -10.91256 -10.85745 -10.47744 -10.01867 -9.77277 -8.56836 -7.80324 -5.24981 0.22297 1.35615 1.47975 1.50913 1.55815 1.61295 1.63103 2.02076 2.54596 2.82934 3.31294 3.35325 3.63989 3.72934 3.77365 3.96797 4.00506 4.09064 4.09419 4.18304 4.22471 4.23181 4.31422 4.45869 4.48171 4.61097 4.62698 4.65720 4.69499 4.81046 4.96150 4.98294 4.99806 5.05883 5.13190 5.14130 5.19459 5.25269 5.43862 5.56733 5.57413 5.61665 5.75813 5.79143 5.83393 6.46905 6.59544 6.61567 7.22009 7.26754 7.94996 8.45411 9.25465 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002169 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.647633 B =12904.487421 C =13715.336897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.042 4.042 3 C -0.065 4.065 4 N -0.487 5.487 5 C 0.166 3.834 6 C 0.158 3.842 7 O -0.395 6.395 8 C 0.049 3.951 9 C 0.508 3.492 10 O -0.579 6.579 11 N -0.703 5.703 12 C 0.162 3.838 13 H 0.072 0.928 14 C -0.143 4.143 15 C 0.188 3.812 16 N -0.601 5.601 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.957 3.043 22 H -0.284 1.284 23 H -0.301 1.301 24 H -0.274 1.274 25 C 0.160 3.840 26 H 0.032 0.968 27 C -0.131 4.131 28 C -0.124 4.124 29 O -0.212 6.212 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.213 0.787 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.411 0.589 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.004 0.996 43 H 0.245 0.755 44 H 0.041 0.959 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.092 0.908 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 17.598 -10.805 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.095 4.095 3 C -0.204 4.204 4 N -0.219 5.219 5 C -0.040 4.040 6 C 0.081 3.919 7 O -0.313 6.313 8 C -0.030 4.030 9 C 0.295 3.705 10 O -0.458 6.458 11 N -0.357 5.357 12 C 0.057 3.943 13 H 0.090 0.910 14 C -0.184 4.184 15 C 0.062 3.938 16 N -0.326 5.326 17 C -0.375 4.375 18 H 0.093 0.907 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.786 3.214 22 H -0.210 1.210 23 H -0.227 1.227 24 H -0.200 1.200 25 C 0.055 3.945 26 H 0.049 0.951 27 C -0.189 4.189 28 C -0.164 4.164 29 O -0.099 6.099 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.230 0.770 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.144 0.856 38 H 0.249 0.751 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.022 0.978 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.111 0.889 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.016 18.175 -10.076 21.634 hybrid contribution -0.510 -1.896 0.172 1.971 sum -6.526 16.279 -9.905 20.142 Atomic orbital electron populations 1.20558 0.80667 1.05784 1.05457 1.24466 0.96904 0.83840 1.04256 1.23657 0.86968 1.02047 1.07679 1.70382 1.24874 1.09675 1.16932 1.26103 0.84633 0.90270 1.03002 1.20807 0.88974 0.97658 0.84427 1.88000 1.46848 1.70431 1.26047 1.22392 0.90154 0.97512 0.92902 1.20831 0.80185 0.77875 0.91616 1.90693 1.49943 1.51429 1.53769 1.45920 1.29878 1.50825 1.09029 1.20729 0.95682 0.96631 0.81255 0.90962 1.22395 0.98324 0.97325 1.00323 1.20390 0.84698 0.93670 0.95000 1.44350 1.00980 1.09722 1.77502 1.19448 1.03377 0.84114 1.30583 0.90725 1.25738 0.99598 1.00324 0.99248 1.70141 1.22512 1.27700 1.37907 0.85495 0.77371 0.79962 0.78541 1.21003 1.22728 1.19987 1.20671 0.90945 0.87668 0.95262 0.95078 1.21748 0.94968 1.00990 1.01165 1.22239 0.93276 0.98911 1.01936 1.84405 1.18182 1.37809 1.69514 0.87641 0.90121 0.86473 0.77044 0.87358 0.85963 0.87224 0.85643 0.75124 0.92221 0.94061 0.93630 0.97754 0.94578 0.93971 0.90389 0.93453 0.88941 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.43 71.23 0.74 0.11 16 2 C -0.04 -0.81 7.39 24.79 0.18 -0.63 16 3 C -0.07 -1.34 11.80 83.39 0.98 -0.36 16 4 N -0.49 -13.02 11.29 -303.82 -3.43 -16.45 16 5 C 0.17 4.24 7.97 88.34 0.70 4.95 16 6 C 0.16 3.08 6.56 71.24 0.47 3.55 16 7 O -0.39 -10.85 9.86 -129.94 -1.28 -12.13 16 8 C 0.05 1.06 6.42 71.23 0.46 1.52 16 9 C 0.51 15.93 7.87 87.66 0.69 16.62 16 10 O -0.58 -24.08 16.16 15.98 0.26 -23.82 16 11 N -0.70 -20.50 4.26 -442.41 -1.89 -22.39 16 12 C 0.16 5.31 2.78 45.02 0.13 5.44 16 13 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 14 C -0.14 -5.73 5.77 30.67 0.18 -5.56 16 15 C 0.19 8.84 5.03 86.36 0.43 9.28 16 16 N -0.60 -27.58 2.99 -675.28 -2.02 -29.60 16 17 C -0.24 -12.56 8.60 84.03 0.72 -11.84 16 18 H 0.08 3.69 6.21 -2.91 -0.02 3.67 16 19 C -0.05 -2.94 4.96 84.86 0.42 -2.52 16 20 N -0.94 -54.12 11.14 21.65 0.24 -53.87 16 21 Si 0.96 44.21 29.58 68.60 2.03 46.24 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C 0.16 5.59 3.19 44.97 0.14 5.74 16 26 H 0.03 1.05 6.65 -2.39 -0.02 1.04 16 27 C -0.13 -4.18 7.94 71.98 0.57 -3.61 16 28 C -0.12 -3.65 5.07 30.66 0.16 -3.49 16 29 O -0.21 -5.39 10.78 -3.74 -0.04 -5.43 16 30 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.41 10.35 6.87 -92.71 -0.64 9.71 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 2.52 6.06 -2.39 -0.01 2.50 16 42 H 0.00 0.21 7.74 -2.39 -0.02 0.20 16 43 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 44 H 0.04 1.50 7.62 -2.39 -0.02 1.49 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.05 1.56 7.45 -2.39 -0.02 1.55 16 47 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -79.30 389.42 1.19 -78.12 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.34 Total: 20.14 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 6.98 Total: 19.20 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -7.10 Total: -122.32 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.06 Total: -41.38 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -79.30 1.19 -78.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274635940.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.121 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds