Wall clock time and date at job start Tue Mar 31 2020 20:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46503 * 119.99979 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 13 13 C 1.52999 * 109.47265 * 89.99723 * 12 10 8 14 14 C 1.52998 * 109.47131 * 180.02562 * 13 12 10 15 15 N 1.46904 * 109.47149 * 179.97438 * 14 13 12 16 16 C 1.46904 * 110.99946 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46976 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99704 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00124 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00327 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00097 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00395 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00452 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99893 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47396 * 89.99636 * 24 22 20 26 26 H 1.48496 * 109.47247 * 210.00017 * 24 22 20 27 27 H 1.48500 * 109.46965 * 329.99600 * 24 22 20 28 28 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 31 31 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 33 33 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 34 34 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 35 35 H 1.08995 * 109.47430 * 89.99888 * 11 10 8 36 36 H 1.09003 * 109.46760 * 210.00456 * 11 10 8 37 37 H 1.08998 * 109.46916 * 329.99662 * 11 10 8 38 38 H 1.09003 * 109.47421 * 210.00103 * 12 10 8 39 39 H 1.08999 * 109.47205 * 329.99628 * 12 10 8 40 40 H 1.08996 * 109.47139 * 300.00163 * 13 12 10 41 41 H 1.08999 * 109.47087 * 59.99832 * 13 12 10 42 42 H 1.08996 * 109.47056 * 299.99986 * 14 13 12 43 43 H 1.08999 * 109.47458 * 59.99832 * 14 13 12 44 44 H 1.00903 * 111.00068 * 56.04615 * 15 14 13 45 45 H 1.09002 * 109.46836 * 299.99695 * 16 15 14 46 46 H 1.08997 * 109.47141 * 60.00170 * 16 15 14 47 47 H 0.97005 * 119.99941 * 0.02562 * 19 17 16 48 48 H 0.96997 * 120.00128 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 2.0102 -2.5208 2.4513 12 6 1.4103 -4.6429 1.1961 13 6 2.6594 -5.5265 1.2000 14 6 2.2427 -6.9986 1.2088 15 7 3.4419 -7.8470 1.2118 16 6 3.0797 -9.2706 1.2197 17 6 4.3328 -10.1078 1.2233 18 8 5.4206 -9.5712 1.2192 19 7 4.2447 -11.4526 1.2300 20 6 5.3846 -12.2142 1.2327 21 1 6.3533 -11.7365 1.2291 22 6 5.2939 -13.6007 1.2401 23 7 6.3866 -14.3308 1.2423 24 14 3.6186 -14.4270 1.2457 25 1 3.1736 -14.6534 -0.1529 26 1 3.7115 -15.7296 1.9526 27 1 2.6388 -13.5548 1.9419 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9895 2.1011 -0.0004 32 1 5.7911 -0.8249 -0.0010 33 1 4.9566 -2.1203 0.8899 34 1 4.9561 -2.1212 -0.8900 35 1 1.0713 -2.0642 2.7643 36 1 2.3451 -3.2230 3.2148 37 1 2.7639 -1.7452 2.3154 38 1 0.8179 -4.8472 2.0880 39 1 0.8159 -4.8580 0.3082 40 1 3.2516 -5.3222 0.3081 41 1 3.2538 -5.3114 2.0879 42 1 1.6502 -7.2032 2.1004 43 1 1.6484 -7.2134 0.3206 44 1 4.0421 -7.6219 1.9911 45 1 2.4932 -9.4914 2.1115 46 1 2.4912 -9.5007 0.3315 47 1 3.3748 -11.8817 1.2321 48 1 6.3232 -15.2986 1.2478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275979435.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:41 Heat of formation + Delta-G solvation = -54.748029 kcal Electronic energy + Delta-G solvation = -28265.840083 eV Core-core repulsion = 24129.700818 eV Total energy + Delta-G solvation = -4136.139265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.95172 -39.93813 -38.47405 -36.61745 -35.45768 -34.34901 -33.90578 -32.96570 -31.84223 -31.55107 -28.66330 -27.80948 -27.09194 -26.55327 -25.11577 -23.57888 -22.39509 -21.48839 -20.25133 -19.39766 -19.30688 -18.30693 -17.89055 -17.00642 -16.43624 -16.29820 -15.79740 -15.70912 -15.63836 -14.92518 -14.60889 -14.40275 -14.24085 -13.90627 -13.74986 -13.67123 -13.51874 -13.33303 -13.20660 -13.13083 -13.04431 -12.90410 -12.75035 -12.58371 -12.30812 -12.12558 -11.83441 -11.78316 -11.70534 -11.45747 -11.15035 -10.81193 -10.58285 -10.32814 -9.96128 -9.74895 -9.55692 -9.02160 -8.84103 -8.56845 -8.17534 -8.10823 -6.29574 -3.80927 1.24343 1.82470 2.23568 2.45426 2.76591 3.03556 3.08478 3.16157 3.76160 4.04760 4.10403 4.13655 4.23230 4.49845 4.64992 4.74212 4.79365 4.84681 4.89131 4.97779 5.07761 5.08769 5.15164 5.20013 5.22084 5.25931 5.29273 5.30603 5.35265 5.42175 5.43817 5.52113 5.62663 5.65325 5.77111 5.83388 5.94259 5.97536 6.01927 6.07746 6.28466 6.68289 7.00700 7.13023 7.59440 7.61353 7.86742 8.16256 8.61646 8.96652 9.44166 9.84775 10.83580 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.001698 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.386566 B =16489.436178 C =17067.098470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.149 4.149 3 C -0.041 4.041 4 O -0.172 6.172 5 C 0.045 3.955 6 C -0.084 4.084 7 C -0.227 4.227 8 C 0.593 3.407 9 O -0.524 6.524 10 N -0.608 5.608 11 C 0.081 3.919 12 C 0.117 3.883 13 C -0.132 4.132 14 C 0.063 3.937 15 N -0.669 5.669 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.207 0.793 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.073 0.927 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 30.939 3.092 34.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.151 4.151 3 C -0.107 4.107 4 O -0.069 6.069 5 C -0.007 4.007 6 C -0.140 4.140 7 C -0.231 4.231 8 C 0.380 3.620 9 O -0.400 6.400 10 N -0.342 5.342 11 C -0.062 4.062 12 C -0.006 4.006 13 C -0.171 4.171 14 C -0.067 4.067 15 N -0.301 5.301 16 C -0.084 4.084 17 C 0.236 3.764 18 O -0.446 6.446 19 N -0.231 5.231 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.223 0.777 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.169 0.831 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.869 30.967 1.857 33.982 hybrid contribution -1.786 -0.977 1.010 2.273 sum -15.655 29.990 2.867 33.952 Atomic orbital electron populations 1.20182 0.88658 1.02663 1.02635 1.21320 0.96763 0.90499 1.06498 1.23618 0.79642 0.99513 1.07899 1.83741 1.29556 1.21901 1.71656 1.22579 0.96079 0.80740 1.01265 1.20498 0.90986 0.97850 1.04666 1.20935 0.93246 0.93895 1.15052 1.17361 0.76561 0.84707 0.83395 1.90834 1.50066 1.67680 1.31406 1.47791 1.68670 1.11625 1.06073 1.21764 1.01643 0.97434 0.85334 1.21493 0.96937 0.78757 1.03414 1.21893 0.97891 0.93830 1.03466 1.21857 0.92360 0.92033 1.00431 1.60015 1.16346 1.02215 1.51569 1.21704 0.96658 0.88813 1.01262 1.19728 0.90263 0.82532 0.83912 1.90563 1.28798 1.71622 1.53664 1.42204 1.08265 1.05429 1.67158 1.19436 0.87534 0.88378 1.48017 0.86291 1.25040 0.97462 0.96017 0.97678 1.69623 1.27075 1.06030 1.49455 0.86662 0.83698 0.80035 0.78923 1.19579 1.20208 1.19550 0.90958 0.91109 0.91602 0.77677 0.89713 0.89083 0.88764 0.92553 0.90687 0.91111 0.90358 0.89519 0.90321 0.91826 0.95527 0.90858 0.83120 0.93812 0.89428 0.79685 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.38 36.01 0.37 -0.17 16 2 C -0.15 -1.25 6.38 -102.49 -0.65 -1.90 16 3 C -0.04 -0.28 11.96 29.30 0.35 0.07 16 4 O -0.17 -1.50 10.52 7.66 0.08 -1.42 16 5 C 0.05 0.42 7.05 -34.96 -0.25 0.17 16 6 C -0.08 -0.61 10.18 36.01 0.37 -0.24 16 7 C -0.23 -2.33 4.32 -103.28 -0.45 -2.78 16 8 C 0.59 7.06 7.27 -12.54 -0.09 6.97 16 9 O -0.52 -8.36 16.69 5.26 0.09 -8.27 16 10 N -0.61 -5.63 2.87 -182.87 -0.53 -6.15 16 11 C 0.08 0.51 10.26 59.85 0.61 1.12 16 12 C 0.12 1.06 5.41 -4.04 -0.02 1.04 16 13 C -0.13 -1.40 5.80 -26.73 -0.16 -1.56 16 14 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 15 N -0.67 -10.64 6.13 -115.06 -0.70 -11.34 16 16 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 17 C 0.45 10.42 7.82 -10.99 -0.09 10.34 16 18 O -0.56 -15.45 15.78 5.54 0.09 -15.37 16 19 N -0.59 -14.30 5.09 -10.97 -0.06 -14.36 16 20 C -0.30 -8.74 10.16 -14.94 -0.15 -8.89 16 21 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 24 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.21 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 37 H 0.07 0.44 6.63 -51.93 -0.34 0.10 16 38 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.09 0.91 7.42 -51.93 -0.39 0.53 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.35 5.65 8.43 -39.29 -0.33 5.32 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 47 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -36.98 407.82 -6.73 -43.71 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.61 Total: 10.70 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.30 Total: 6.72 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.51 Total: -57.04 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: 0.26 Total: -25.06 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.98 -6.73 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275979435.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.036 kcal (2) G-P(sol) polarization free energy of solvation -36.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds