Wall clock time and date at job start Tue Mar 31 2020 20:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46503 * 119.99979 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 13 13 C 1.52999 * 109.47265 * 89.99723 * 12 10 8 14 14 C 1.52998 * 109.47131 * 180.02562 * 13 12 10 15 15 N 1.46904 * 109.47149 * 179.97438 * 14 13 12 16 16 C 1.46904 * 110.99946 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46976 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99704 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00124 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00327 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00097 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00395 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00452 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99893 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47396 * 89.99636 * 24 22 20 26 26 H 1.48496 * 109.47247 * 210.00017 * 24 22 20 27 27 H 1.48500 * 109.46965 * 329.99600 * 24 22 20 28 28 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 31 31 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 33 33 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 34 34 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 35 35 H 1.08995 * 109.47430 * 89.99888 * 11 10 8 36 36 H 1.09003 * 109.46760 * 210.00456 * 11 10 8 37 37 H 1.08998 * 109.46916 * 329.99662 * 11 10 8 38 38 H 1.09003 * 109.47421 * 210.00103 * 12 10 8 39 39 H 1.08999 * 109.47205 * 329.99628 * 12 10 8 40 40 H 1.08996 * 109.47139 * 300.00163 * 13 12 10 41 41 H 1.08999 * 109.47087 * 59.99832 * 13 12 10 42 42 H 1.08996 * 109.47056 * 299.99986 * 14 13 12 43 43 H 1.08999 * 109.47458 * 59.99832 * 14 13 12 44 44 H 1.00903 * 111.00068 * 56.04615 * 15 14 13 45 45 H 1.09002 * 109.46836 * 299.99695 * 16 15 14 46 46 H 1.08997 * 109.47141 * 60.00170 * 16 15 14 47 47 H 0.97005 * 119.99941 * 0.02562 * 19 17 16 48 48 H 0.96997 * 120.00128 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 2.0102 -2.5208 2.4513 12 6 1.4103 -4.6429 1.1961 13 6 2.6594 -5.5265 1.2000 14 6 2.2427 -6.9986 1.2088 15 7 3.4419 -7.8470 1.2118 16 6 3.0797 -9.2706 1.2197 17 6 4.3328 -10.1078 1.2233 18 8 5.4206 -9.5712 1.2192 19 7 4.2447 -11.4526 1.2300 20 6 5.3846 -12.2142 1.2327 21 1 6.3533 -11.7365 1.2291 22 6 5.2939 -13.6007 1.2401 23 7 6.3866 -14.3308 1.2423 24 14 3.6186 -14.4270 1.2457 25 1 3.1736 -14.6534 -0.1529 26 1 3.7115 -15.7296 1.9526 27 1 2.6388 -13.5548 1.9419 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9895 2.1011 -0.0004 32 1 5.7911 -0.8249 -0.0010 33 1 4.9566 -2.1203 0.8899 34 1 4.9561 -2.1212 -0.8900 35 1 1.0713 -2.0642 2.7643 36 1 2.3451 -3.2230 3.2148 37 1 2.7639 -1.7452 2.3154 38 1 0.8179 -4.8472 2.0880 39 1 0.8159 -4.8580 0.3082 40 1 3.2516 -5.3222 0.3081 41 1 3.2538 -5.3114 2.0879 42 1 1.6502 -7.2032 2.1004 43 1 1.6484 -7.2134 0.3206 44 1 4.0421 -7.6219 1.9911 45 1 2.4932 -9.4914 2.1115 46 1 2.4912 -9.5007 0.3315 47 1 3.3748 -11.8817 1.2321 48 1 6.3232 -15.2986 1.2478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275979435.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:40 Heat of formation + Delta-G solvation = -83.145245 kcal Electronic energy + Delta-G solvation = -28267.071479 eV Core-core repulsion = 24129.700818 eV Total energy + Delta-G solvation = -4137.370661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.57783 -40.78978 -40.30394 -37.67371 -36.53047 -35.90356 -34.96340 -33.78115 -33.60833 -32.69347 -29.38790 -28.85547 -27.75205 -27.42354 -26.42548 -24.97141 -23.29004 -22.35782 -21.28736 -20.84693 -20.27476 -20.04078 -18.57554 -17.92894 -17.66384 -17.24008 -17.03415 -16.74633 -16.59091 -16.40192 -15.72524 -15.63782 -15.20914 -15.05616 -14.89056 -14.49913 -14.37444 -14.31236 -14.22604 -14.10107 -13.93000 -13.85718 -13.60087 -13.43737 -13.30047 -13.25576 -12.99905 -12.89127 -12.75567 -12.46426 -12.40831 -12.30653 -11.97550 -11.69258 -11.52180 -11.24010 -10.46294 -10.41996 -10.25706 -9.78530 -9.44801 -9.31614 -8.41856 -6.03088 0.59545 1.22341 1.30045 1.36090 1.37137 1.44730 1.83184 1.94365 2.09075 2.22958 2.73992 3.14301 3.40747 3.48796 3.56646 3.90518 3.99958 4.08998 4.15357 4.18536 4.25502 4.34411 4.35230 4.41800 4.48451 4.50642 4.54139 4.59201 4.62665 4.66282 4.72589 4.73516 4.79306 4.86746 4.96391 5.00151 5.15398 5.16579 5.19673 5.45665 5.51442 5.52169 5.90086 6.05764 6.06546 6.24267 6.40364 6.59182 6.87085 7.02482 7.38709 7.95367 8.75779 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.001698 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.386566 B =16489.436178 C =17067.098470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.169 4.169 3 C -0.028 4.028 4 O -0.178 6.178 5 C 0.036 3.964 6 C -0.083 4.083 7 C -0.250 4.250 8 C 0.590 3.410 9 O -0.579 6.579 10 N -0.603 5.603 11 C 0.078 3.922 12 C 0.119 3.881 13 C -0.122 4.122 14 C 0.067 3.933 15 N -0.694 5.694 16 C 0.063 3.937 17 C 0.447 3.553 18 O -0.616 6.616 19 N -0.590 5.590 20 C -0.331 4.331 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.230 1.230 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.246 0.754 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.345 0.655 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.787 32.141 4.672 37.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.171 4.171 3 C -0.094 4.094 4 O -0.075 6.075 5 C -0.015 4.015 6 C -0.139 4.139 7 C -0.254 4.254 8 C 0.378 3.622 9 O -0.459 6.459 10 N -0.334 5.334 11 C -0.064 4.064 12 C -0.003 4.003 13 C -0.161 4.161 14 C -0.062 4.062 15 N -0.327 5.327 16 C -0.069 4.069 17 C 0.235 3.765 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.460 4.460 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.574 5.574 24 Si 0.786 3.214 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.153 1.153 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.262 0.738 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.164 0.836 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.226 0.774 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.737 32.203 3.480 36.929 hybrid contribution -0.469 -1.235 0.534 1.425 sum -18.206 30.968 4.014 36.147 Atomic orbital electron populations 1.20203 0.87481 1.03578 1.02527 1.21621 0.97763 0.90138 1.07551 1.24388 0.78578 1.00835 1.05556 1.83755 1.30628 1.21475 1.71597 1.22784 0.96261 0.81171 1.01326 1.20523 0.91215 0.97969 1.04232 1.21041 0.94409 0.93631 1.16314 1.17687 0.75827 0.85341 0.83340 1.90794 1.52802 1.68928 1.33349 1.47892 1.67244 1.11743 1.06482 1.21972 1.02592 0.97756 0.84083 1.21503 0.96192 0.78394 1.04243 1.21769 0.98272 0.93850 1.02164 1.21897 0.90987 0.91438 1.01831 1.59998 1.18505 1.02227 1.51942 1.21625 0.93112 0.88148 1.04049 1.21033 0.91911 0.82490 0.81114 1.90541 1.31716 1.72605 1.55184 1.42022 1.07674 1.05743 1.67727 1.19016 0.86991 0.89511 1.50490 0.92763 1.26142 1.03232 0.96050 0.95991 1.69807 1.30674 1.06769 1.50201 0.85344 0.77323 0.78809 0.79908 1.18306 1.19893 1.15283 0.91564 0.88314 0.92531 0.73762 0.87960 0.88476 0.90212 0.90977 0.88842 0.91222 0.86877 0.91227 0.93889 0.90833 0.92426 0.90810 0.83618 0.90051 0.87102 0.77403 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.38 71.24 0.74 -0.19 16 2 C -0.17 -2.64 6.38 -18.49 -0.12 -2.76 16 3 C -0.03 -0.33 11.96 66.89 0.80 0.47 16 4 O -0.18 -2.89 10.52 4.51 0.05 -2.84 16 5 C 0.04 0.67 7.05 25.26 0.18 0.85 16 6 C -0.08 -1.25 10.18 71.24 0.72 -0.52 16 7 C -0.25 -5.14 4.32 -18.99 -0.08 -5.23 16 8 C 0.59 14.43 7.27 86.65 0.63 15.06 16 9 O -0.58 -19.55 16.69 -4.08 -0.07 -19.62 16 10 N -0.60 -10.66 2.87 -850.72 -2.44 -13.11 16 11 C 0.08 0.81 10.26 127.77 1.31 2.12 16 12 C 0.12 1.99 5.41 86.38 0.47 2.46 16 13 C -0.12 -2.46 5.80 30.59 0.18 -2.28 16 14 C 0.07 1.42 5.69 86.30 0.49 1.91 16 15 N -0.69 -21.02 6.13 -517.92 -3.17 -24.19 16 16 C 0.06 1.96 6.17 85.56 0.53 2.48 16 17 C 0.45 20.61 7.82 87.66 0.69 21.29 16 18 O -0.62 -35.01 15.78 -3.08 -0.05 -35.06 16 19 N -0.59 -28.25 5.09 -306.99 -1.56 -29.81 16 20 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 21 H 0.05 3.85 7.39 -2.91 -0.02 3.82 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 23 N -0.93 -56.80 13.96 21.66 0.30 -56.50 16 24 Si 0.97 39.01 27.74 68.60 1.90 40.91 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.25 0.57 8.06 -2.91 -0.02 0.55 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 0.65 8.07 -2.39 -0.02 0.63 16 37 H 0.07 0.77 6.63 -2.39 -0.02 0.75 16 38 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 39 H 0.07 1.44 7.42 -2.39 -0.02 1.42 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.35 10.87 8.43 -89.69 -0.76 10.11 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 47 H 0.39 15.36 5.76 -92.70 -0.53 14.83 16 48 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -88.69 407.82 2.44 -86.25 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.37 Total: 37.54 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 7.85 Total: 16.43 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -6.88 Total: -123.61 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -0.07 Total: -57.52 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.90 Total: 40.91 kcal Total: -88.69 2.44 -86.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275979435.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.105 kcal (2) G-P(sol) polarization free energy of solvation -88.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds