Wall clock time and date at job start Tue Mar 31 2020 19:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34323 * 126.44851 * 2 1 4 4 N 1.34474 * 107.67026 * 180.02562 * 3 2 1 5 5 C 1.30254 * 108.70261 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.61849 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.46901 * 90.02863 * 6 5 4 8 8 C 1.42901 * 113.99759 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46761 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00519 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99548 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99854 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.63570 * 325.69575 * 12 11 9 14 14 C 1.54321 * 110.72093 * 88.83758 * 12 11 9 15 15 N 1.47020 * 107.27192 * 96.17363 * 14 12 11 16 16 C 1.36937 * 125.64868 * 178.97536 * 15 14 12 17 17 H 1.07995 * 119.99824 * 174.79191 * 16 15 14 18 18 C 1.38807 * 119.99844 * 354.78765 * 16 15 14 19 19 N 1.31622 * 120.00239 * 7.05390 * 18 16 15 20 20 Si 1.86798 * 119.99847 * 187.05483 * 18 16 15 21 21 H 1.48507 * 109.47497 * 94.98584 * 20 18 16 22 22 H 1.48503 * 109.47280 * 214.98519 * 20 18 16 23 23 H 1.48504 * 109.47283 * 334.98901 * 20 18 16 24 24 C 1.47426 * 108.70341 * 358.93921 * 15 14 12 25 25 C 1.55152 * 110.72070 * 202.55830 * 12 11 9 26 26 C 1.53001 * 111.00499 * 35.20660 * 25 12 11 27 27 C 1.53004 * 111.00786 * 159.06222 * 25 12 11 28 28 O 1.33972 * 108.76007 * 0.22830 * 5 4 3 29 29 H 1.08999 * 109.47270 * 90.00207 * 1 2 3 30 30 H 1.08998 * 109.47520 * 210.00177 * 1 2 3 31 31 H 1.08998 * 109.46702 * 330.00338 * 1 2 3 32 32 H 1.08004 * 126.16236 * 0.05302 * 3 2 1 33 33 H 1.08995 * 109.47594 * 330.02426 * 6 5 4 34 34 H 1.09001 * 109.47111 * 210.02598 * 6 5 4 35 35 H 1.08996 * 109.47559 * 299.99581 * 8 7 6 36 36 H 1.09000 * 109.46957 * 59.99781 * 8 7 6 37 37 H 0.96996 * 120.00466 * 359.97438 * 11 9 8 38 38 H 1.09011 * 109.87861 * 215.59022 * 14 12 11 39 39 H 1.08996 * 109.88443 * 336.59625 * 14 12 11 40 40 H 0.96998 * 119.99517 * 179.97438 * 19 18 16 41 41 H 1.08991 * 110.36769 * 142.96971 * 24 15 14 42 42 H 1.09000 * 110.36598 * 265.18188 * 24 15 14 43 43 H 1.08997 * 109.46988 * 60.00792 * 26 25 12 44 44 H 1.09001 * 109.46889 * 180.02562 * 26 25 12 45 45 H 1.09003 * 109.47366 * 300.00241 * 26 25 12 46 46 H 1.08998 * 109.46780 * 59.99825 * 27 25 12 47 47 H 1.09002 * 109.47078 * 179.97438 * 27 25 12 48 48 H 1.08999 * 109.46395 * 299.99888 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.0805 0.0000 4 7 3.5782 0.6476 -0.0006 5 6 3.5765 -0.6549 -0.0004 6 6 4.8004 -1.5342 -0.0014 7 8 5.1881 -1.8124 1.3456 8 6 6.3448 -2.6441 1.4575 9 6 6.6616 -2.8706 2.9133 10 8 5.9659 -2.3688 3.7706 11 7 7.7190 -3.6299 3.2625 12 6 8.0267 -3.8506 4.6778 13 1 7.7817 -2.9666 5.2666 14 6 7.2766 -5.0884 5.2131 15 7 8.2044 -6.2265 5.1399 16 6 7.9298 -7.5070 5.5400 17 1 8.6503 -8.2928 5.3677 18 6 6.7254 -7.7950 6.1671 19 7 5.7911 -6.8719 6.2535 20 14 6.4306 -9.4926 6.8885 21 1 6.7738 -9.4831 8.3334 22 1 5.0014 -9.8600 6.7218 23 1 7.2821 -10.4846 6.1841 24 6 9.4790 -5.7611 4.5637 25 6 9.5182 -4.2364 4.8615 26 6 10.4035 -3.4990 3.8548 27 6 9.9814 -3.9690 6.2950 28 8 2.3074 -1.0841 -0.0047 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9823 2.1112 0.0008 33 1 5.6144 -1.0234 -0.5157 34 1 4.5758 -2.4689 -0.5153 35 1 6.1519 -3.6018 0.9740 36 1 7.1909 -2.1566 0.9733 37 1 8.2757 -4.0309 2.5769 38 1 6.9760 -4.9210 6.2475 39 1 6.3976 -5.2836 4.5989 40 1 4.9494 -7.0734 6.6914 41 1 10.3185 -6.2629 5.0448 42 1 9.4969 -5.9395 3.4886 43 1 10.3005 -2.4236 3.9998 44 1 11.4436 -3.7882 4.0055 45 1 10.0972 -3.7601 2.8419 46 1 9.3801 -4.5586 6.9870 47 1 11.0301 -4.2486 6.3961 48 1 9.8639 -2.9096 6.5230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276594306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:55 Heat of formation + Delta-G solvation = -24.179227 kcal Electronic energy + Delta-G solvation = -29335.495269 eV Core-core repulsion = 25200.681566 eV Total energy + Delta-G solvation = -4134.813703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.53706 -39.84257 -38.43652 -37.26588 -34.93835 -33.86602 -33.03001 -32.97007 -30.71327 -30.01496 -28.51214 -27.32258 -26.40560 -25.61738 -25.29605 -23.30228 -22.53515 -21.32890 -20.68640 -19.89107 -18.78508 -17.69702 -17.34177 -16.77521 -16.64188 -16.40307 -16.29435 -15.42994 -14.99849 -14.86218 -14.52088 -14.13433 -13.92131 -13.86271 -13.66902 -13.42945 -13.34375 -13.23824 -12.69157 -12.56492 -12.41296 -12.10508 -11.97118 -11.95946 -11.66157 -11.51732 -11.35360 -11.06259 -10.99458 -10.77993 -10.75803 -10.38626 -10.24076 -10.02871 -9.99628 -9.87180 -9.65034 -9.43618 -8.95929 -8.59783 -8.44329 -6.81536 -5.68988 -3.03015 1.09166 2.20616 2.44598 2.96027 3.11532 3.41123 3.46026 3.48787 3.71193 4.25912 4.45461 4.51098 4.70241 4.71872 4.80517 4.91433 4.97898 5.04078 5.05041 5.11430 5.19145 5.26912 5.28173 5.30444 5.54409 5.59372 5.63886 5.80389 5.80454 5.92309 6.02935 6.04037 6.17112 6.20187 6.24268 6.39085 6.58293 6.60822 6.66985 6.68310 6.75762 6.96633 7.49519 7.58448 7.64714 7.82823 7.93155 8.26986 8.61694 9.22815 9.83902 10.49658 11.41822 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.002531 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.935934 B =11061.680252 C =12722.514052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.046 4.046 4 N -0.460 5.460 5 C 0.191 3.809 6 C 0.160 3.840 7 O -0.354 6.354 8 C 0.046 3.954 9 C 0.512 3.488 10 O -0.518 6.518 11 N -0.708 5.708 12 C 0.126 3.874 13 H 0.088 0.912 14 C 0.174 3.826 15 N -0.603 5.603 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.915 5.915 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.144 3.856 25 C -0.089 4.089 26 C -0.130 4.130 27 C -0.126 4.126 28 O -0.193 6.193 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.185 0.815 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.395 0.605 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.253 0.747 41 H 0.041 0.959 42 H 0.015 0.985 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 13.331 -15.587 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.185 4.185 4 N -0.191 5.191 5 C -0.016 4.016 6 C 0.082 3.918 7 O -0.272 6.272 8 C -0.034 4.034 9 C 0.296 3.704 10 O -0.392 6.392 11 N -0.362 5.362 12 C 0.022 3.978 13 H 0.106 0.894 14 C 0.049 3.951 15 N -0.329 5.329 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.562 5.562 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.018 3.982 25 C -0.091 4.091 26 C -0.188 4.188 27 C -0.184 4.184 28 O -0.079 6.079 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.202 0.798 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.230 0.770 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.018 13.942 -14.683 20.273 hybrid contribution -0.537 -1.584 -0.155 1.680 sum -1.555 12.358 -14.838 19.373 Atomic orbital electron populations 1.20311 0.83787 1.04747 1.03799 1.23579 0.95214 0.84549 1.05948 1.23107 0.87630 1.00466 1.07319 1.70402 1.23282 1.09056 1.16326 1.25531 0.83912 0.89898 1.02257 1.20476 0.88958 0.96405 0.85914 1.88098 1.45822 1.69726 1.23528 1.22294 0.89047 0.95820 0.96195 1.19941 0.81195 0.79385 0.89866 1.90751 1.48204 1.48847 1.51422 1.45870 1.29794 1.51331 1.09160 1.22487 0.94654 1.00467 0.80228 0.89378 1.21529 0.91239 0.82607 0.99767 1.44439 1.08849 1.06121 1.73514 1.19006 1.01366 0.84000 1.31603 0.90477 1.24838 0.96562 0.97898 1.00963 1.69982 1.06033 1.32460 1.47711 0.86155 0.77114 0.83518 0.79289 1.21633 1.21841 1.20720 1.21709 0.90409 0.90500 0.95593 1.22098 0.93554 0.97233 0.96225 1.21667 0.99123 0.99809 0.98203 1.21597 1.00735 1.00822 0.95220 1.84406 1.17720 1.36579 1.69228 0.89710 0.90027 0.88779 0.79752 0.88508 0.89883 0.89718 0.89941 0.77006 0.92675 0.93567 0.93670 0.94080 0.96763 0.92801 0.92643 0.93077 0.91173 0.92863 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 36.01 0.38 -0.05 16 2 C -0.04 -0.42 7.39 -35.69 -0.26 -0.68 16 3 C -0.05 -0.51 11.80 -17.78 -0.21 -0.72 16 4 N -0.46 -6.41 11.29 -11.10 -0.13 -6.53 16 5 C 0.19 2.55 7.97 -12.95 -0.10 2.45 16 6 C 0.16 1.72 6.56 36.00 0.24 1.96 16 7 O -0.35 -5.27 9.86 -55.14 -0.54 -5.82 16 8 C 0.05 0.57 6.42 36.01 0.23 0.80 16 9 C 0.51 8.84 7.91 -10.98 -0.09 8.76 16 10 O -0.52 -11.68 16.18 -14.35 -0.23 -11.91 16 11 N -0.71 -11.37 4.51 -52.03 -0.23 -11.61 16 12 C 0.13 2.39 2.54 -66.10 -0.17 2.22 16 13 H 0.09 1.77 7.53 -51.93 -0.39 1.38 16 14 C 0.17 4.28 4.81 -3.07 -0.01 4.26 16 15 N -0.60 -14.89 3.38 -169.77 -0.57 -15.47 16 16 C -0.23 -6.36 10.26 -15.06 -0.15 -6.51 16 17 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 18 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 19 N -0.92 -27.40 10.36 55.49 0.57 -26.83 16 20 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.14 2.79 6.16 -2.26 -0.01 2.77 16 25 C -0.09 -1.45 0.84 -152.10 -0.13 -1.58 16 26 C -0.13 -1.60 8.23 37.16 0.31 -1.30 16 27 C -0.13 -2.00 8.58 37.16 0.32 -1.68 16 28 O -0.19 -2.57 10.78 5.34 0.06 -2.51 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.19 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 5.16 7.01 -40.82 -0.29 4.87 16 38 H 0.06 1.54 7.30 -51.92 -0.38 1.16 16 39 H 0.05 1.31 7.51 -51.93 -0.39 0.92 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 42 H 0.01 0.27 8.00 -51.93 -0.42 -0.14 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.56 6.44 -51.93 -0.33 0.22 16 46 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -37.63 396.16 -7.55 -45.18 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.65 Total: 1.92 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 0.23 Total: 10.42 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.36 Total: -60.43 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.72 Total: -20.24 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.63 -7.55 -45.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276594306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.997 kcal (2) G-P(sol) polarization free energy of solvation -37.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds