Wall clock time and date at job start Tue Mar 31 2020 19:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34323 * 126.44851 * 2 1 4 4 N 1.34474 * 107.67026 * 180.02562 * 3 2 1 5 5 C 1.30254 * 108.70261 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.61849 * 179.97438 * 5 4 3 7 7 O 1.42903 * 109.46901 * 90.02863 * 6 5 4 8 8 C 1.42901 * 113.99759 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46761 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00519 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99548 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99854 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.63570 * 325.69575 * 12 11 9 14 14 C 1.54321 * 110.72093 * 88.83758 * 12 11 9 15 15 N 1.47020 * 107.27192 * 96.17363 * 14 12 11 16 16 C 1.36937 * 125.64868 * 178.97536 * 15 14 12 17 17 H 1.07995 * 119.99824 * 174.79191 * 16 15 14 18 18 C 1.38807 * 119.99844 * 354.78765 * 16 15 14 19 19 N 1.31622 * 120.00239 * 7.05390 * 18 16 15 20 20 Si 1.86798 * 119.99847 * 187.05483 * 18 16 15 21 21 H 1.48507 * 109.47497 * 94.98584 * 20 18 16 22 22 H 1.48503 * 109.47280 * 214.98519 * 20 18 16 23 23 H 1.48504 * 109.47283 * 334.98901 * 20 18 16 24 24 C 1.47426 * 108.70341 * 358.93921 * 15 14 12 25 25 C 1.55152 * 110.72070 * 202.55830 * 12 11 9 26 26 C 1.53001 * 111.00499 * 35.20660 * 25 12 11 27 27 C 1.53004 * 111.00786 * 159.06222 * 25 12 11 28 28 O 1.33972 * 108.76007 * 0.22830 * 5 4 3 29 29 H 1.08999 * 109.47270 * 90.00207 * 1 2 3 30 30 H 1.08998 * 109.47520 * 210.00177 * 1 2 3 31 31 H 1.08998 * 109.46702 * 330.00338 * 1 2 3 32 32 H 1.08004 * 126.16236 * 0.05302 * 3 2 1 33 33 H 1.08995 * 109.47594 * 330.02426 * 6 5 4 34 34 H 1.09001 * 109.47111 * 210.02598 * 6 5 4 35 35 H 1.08996 * 109.47559 * 299.99581 * 8 7 6 36 36 H 1.09000 * 109.46957 * 59.99781 * 8 7 6 37 37 H 0.96996 * 120.00466 * 359.97438 * 11 9 8 38 38 H 1.09011 * 109.87861 * 215.59022 * 14 12 11 39 39 H 1.08996 * 109.88443 * 336.59625 * 14 12 11 40 40 H 0.96998 * 119.99517 * 179.97438 * 19 18 16 41 41 H 1.08991 * 110.36769 * 142.96971 * 24 15 14 42 42 H 1.09000 * 110.36598 * 265.18188 * 24 15 14 43 43 H 1.08997 * 109.46988 * 60.00792 * 26 25 12 44 44 H 1.09001 * 109.46889 * 180.02562 * 26 25 12 45 45 H 1.09003 * 109.47366 * 300.00241 * 26 25 12 46 46 H 1.08998 * 109.46780 * 59.99825 * 27 25 12 47 47 H 1.09002 * 109.47078 * 179.97438 * 27 25 12 48 48 H 1.08999 * 109.46395 * 299.99888 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.0805 0.0000 4 7 3.5782 0.6476 -0.0006 5 6 3.5765 -0.6549 -0.0004 6 6 4.8004 -1.5342 -0.0014 7 8 5.1881 -1.8124 1.3456 8 6 6.3448 -2.6441 1.4575 9 6 6.6616 -2.8706 2.9133 10 8 5.9659 -2.3688 3.7706 11 7 7.7190 -3.6299 3.2625 12 6 8.0267 -3.8506 4.6778 13 1 7.7817 -2.9666 5.2666 14 6 7.2766 -5.0884 5.2131 15 7 8.2044 -6.2265 5.1399 16 6 7.9298 -7.5070 5.5400 17 1 8.6503 -8.2928 5.3677 18 6 6.7254 -7.7950 6.1671 19 7 5.7911 -6.8719 6.2535 20 14 6.4306 -9.4926 6.8885 21 1 6.7738 -9.4831 8.3334 22 1 5.0014 -9.8600 6.7218 23 1 7.2821 -10.4846 6.1841 24 6 9.4790 -5.7611 4.5637 25 6 9.5182 -4.2364 4.8615 26 6 10.4035 -3.4990 3.8548 27 6 9.9814 -3.9690 6.2950 28 8 2.3074 -1.0841 -0.0047 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9823 2.1112 0.0008 33 1 5.6144 -1.0234 -0.5157 34 1 4.5758 -2.4689 -0.5153 35 1 6.1519 -3.6018 0.9740 36 1 7.1909 -2.1566 0.9733 37 1 8.2757 -4.0309 2.5769 38 1 6.9760 -4.9210 6.2475 39 1 6.3976 -5.2836 4.5989 40 1 4.9494 -7.0734 6.6914 41 1 10.3185 -6.2629 5.0448 42 1 9.4969 -5.9395 3.4886 43 1 10.3005 -2.4236 3.9998 44 1 11.4436 -3.7882 4.0055 45 1 10.0972 -3.7601 2.8419 46 1 9.3801 -4.5586 6.9870 47 1 11.0301 -4.2486 6.3961 48 1 9.8639 -2.9096 6.5230 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276594306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:54 Heat of formation + Delta-G solvation = -53.653420 kcal Electronic energy + Delta-G solvation = -29336.773366 eV Core-core repulsion = 25200.681566 eV Total energy + Delta-G solvation = -4136.091799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.41037 -41.27310 -39.73672 -38.51503 -35.85637 -35.69122 -34.50282 -33.72689 -32.61269 -30.98309 -29.87248 -28.48387 -27.75839 -27.28257 -26.10951 -24.97681 -23.39731 -22.39259 -22.18265 -21.46180 -20.19270 -18.73530 -18.65774 -18.31349 -17.80615 -17.52010 -17.26799 -16.80898 -16.59932 -15.94606 -15.76315 -15.57001 -15.35829 -15.28889 -14.76048 -14.69483 -14.21009 -14.02988 -13.89937 -13.76673 -13.42347 -13.32658 -13.22711 -13.11827 -13.00870 -12.93495 -12.80881 -12.70884 -12.56497 -12.46279 -12.09657 -11.85613 -11.73860 -11.67182 -11.51621 -11.28439 -10.90074 -10.88980 -10.70234 -9.99301 -9.77542 -8.88378 -7.84476 -5.19951 0.22272 1.35837 1.43548 1.45955 1.54749 1.62824 1.63281 2.00562 2.49016 2.83212 3.30961 3.34694 3.50597 3.70675 3.75613 3.79956 3.97198 3.99948 4.08750 4.10574 4.18100 4.22304 4.31700 4.41182 4.48117 4.54234 4.60851 4.64848 4.71281 4.87235 4.91861 4.97552 4.98245 5.07172 5.12791 5.15579 5.18571 5.24950 5.32201 5.38855 5.47533 5.59040 5.69923 5.74531 5.86605 6.17911 6.61180 6.61931 7.07991 7.31796 7.78565 8.43142 9.25131 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.002531 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.935934 B =11061.680252 C =12722.514052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.043 4.043 3 C -0.065 4.065 4 N -0.487 5.487 5 C 0.165 3.835 6 C 0.158 3.842 7 O -0.399 6.399 8 C 0.054 3.946 9 C 0.503 3.497 10 O -0.583 6.583 11 N -0.694 5.694 12 C 0.138 3.862 13 H 0.071 0.929 14 C 0.193 3.807 15 N -0.620 5.620 16 C -0.234 4.234 17 H 0.089 0.911 18 C -0.071 4.071 19 N -0.953 5.953 20 Si 0.976 3.024 21 H -0.290 1.290 22 H -0.301 1.301 23 H -0.262 1.262 24 C 0.138 3.862 25 C -0.074 4.074 26 C -0.123 4.123 27 C -0.125 4.125 28 O -0.213 6.213 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.213 0.787 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.414 0.586 38 H 0.003 0.997 39 H -0.003 1.003 40 H 0.242 0.758 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.080 0.920 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 13.568 -18.220 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 C -0.203 4.203 4 N -0.218 5.218 5 C -0.041 4.041 6 C 0.082 3.918 7 O -0.318 6.318 8 C -0.024 4.024 9 C 0.290 3.710 10 O -0.462 6.462 11 N -0.348 5.348 12 C 0.032 3.968 13 H 0.090 0.910 14 C 0.066 3.934 15 N -0.347 5.347 16 C -0.363 4.363 17 H 0.107 0.893 18 C -0.264 4.264 19 N -0.602 5.602 20 Si 0.804 3.196 21 H -0.217 1.217 22 H -0.228 1.228 23 H -0.186 1.186 24 C 0.014 3.986 25 C -0.075 4.075 26 C -0.181 4.181 27 C -0.183 4.183 28 O -0.100 6.100 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.230 0.770 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.015 0.985 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.098 0.902 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.306 14.159 -17.382 22.456 hybrid contribution -1.259 -1.626 0.659 2.159 sum 0.047 12.533 -16.722 20.897 Atomic orbital electron populations 1.20555 0.80729 1.05715 1.05476 1.24462 0.96911 0.83870 1.04336 1.23651 0.86998 1.02027 1.07647 1.70373 1.24812 1.09658 1.16963 1.26168 0.84671 0.90331 1.02916 1.20832 0.88911 0.97695 0.84367 1.88025 1.46997 1.70429 1.26305 1.22387 0.90252 0.97666 0.92132 1.21039 0.80037 0.77987 0.91965 1.90724 1.50214 1.51409 1.53818 1.45654 1.29949 1.50962 1.08197 1.22044 0.96116 0.96833 0.81803 0.91040 1.21070 0.90750 0.85386 0.96190 1.44687 1.11028 1.05376 1.73565 1.19472 1.01096 0.85530 1.30234 0.89343 1.25706 0.96757 1.01665 1.02241 1.70260 1.06193 1.34582 1.49172 0.85094 0.76520 0.79644 0.78321 1.21701 1.22776 1.18580 1.21999 0.87909 0.92416 0.96311 1.22076 0.92102 0.95454 0.97872 1.21650 0.99191 0.99722 0.97499 1.21603 1.01464 1.01113 0.94097 1.84408 1.18260 1.37839 1.69529 0.87523 0.90264 0.86521 0.77020 0.85631 0.87238 0.86893 0.84933 0.74714 0.97932 0.98473 0.94867 0.93349 0.94496 0.91805 0.90341 0.91131 0.95368 0.90151 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.43 71.24 0.74 0.01 16 2 C -0.04 -0.90 7.39 24.79 0.18 -0.71 16 3 C -0.06 -1.42 11.80 83.39 0.98 -0.44 16 4 N -0.49 -13.51 11.29 -303.83 -3.43 -16.94 16 5 C 0.17 4.41 7.97 88.34 0.70 5.11 16 6 C 0.16 3.16 6.56 71.24 0.47 3.63 16 7 O -0.40 -11.57 9.86 -129.94 -1.28 -12.85 16 8 C 0.05 1.20 6.42 71.24 0.46 1.65 16 9 C 0.50 17.29 7.91 87.66 0.69 17.98 16 10 O -0.58 -27.61 16.18 16.01 0.26 -27.35 16 11 N -0.69 -21.55 4.51 -436.92 -1.97 -23.52 16 12 C 0.14 5.33 2.54 46.18 0.12 5.44 16 13 H 0.07 3.02 7.53 -2.39 -0.02 3.00 16 14 C 0.19 10.04 4.81 86.73 0.42 10.46 16 15 N -0.62 -31.25 3.38 -691.04 -2.34 -33.59 16 16 C -0.23 -13.05 10.26 84.03 0.86 -12.19 16 17 H 0.09 4.62 7.84 -2.91 -0.02 4.60 16 18 C -0.07 -4.15 5.48 84.86 0.46 -3.69 16 19 N -0.95 -60.65 10.36 21.65 0.22 -60.42 16 20 Si 0.98 46.89 29.56 68.60 2.03 48.91 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 C 0.14 5.08 6.16 87.03 0.54 5.62 16 25 C -0.07 -2.25 0.84 -50.62 -0.04 -2.29 16 26 C -0.12 -2.46 8.23 71.98 0.59 -1.87 16 27 C -0.13 -3.84 8.58 71.98 0.62 -3.22 16 28 O -0.21 -5.73 10.78 -3.81 -0.04 -5.77 16 29 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.21 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.41 9.51 7.01 -92.71 -0.65 8.86 16 38 H 0.00 0.15 7.30 -2.38 -0.02 0.14 16 39 H 0.00 -0.18 7.51 -2.39 -0.02 -0.20 16 40 H 0.24 15.21 8.31 -92.71 -0.77 14.43 16 41 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 42 H 0.04 1.23 8.00 -2.39 -0.02 1.21 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.07 1.16 6.44 -2.39 -0.02 1.14 16 46 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -91.62 396.16 1.56 -90.06 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.31 Total: 15.97 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 7.80 Total: 25.50 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -7.52 Total: -134.47 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.06 Total: -45.97 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -91.62 1.56 -90.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276594306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.404 kcal (2) G-P(sol) polarization free energy of solvation -91.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds