Wall clock time and date at job start Tue Mar 31 2020 21:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00242 * 2 1 4 4 C 1.53002 * 109.47434 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47066 * 64.99983 * 4 3 2 6 6 C 1.36942 * 119.99780 * 269.99662 * 5 4 3 7 7 H 1.08002 * 119.99666 * 134.33163 * 6 5 4 8 8 C 1.38809 * 120.00465 * 314.33951 * 6 5 4 9 9 N 1.31616 * 119.99879 * 1.76027 * 8 6 5 10 10 Si 1.86797 * 120.00145 * 181.76400 * 8 6 5 11 11 H 1.48500 * 109.47333 * 89.99655 * 10 8 6 12 12 H 1.48501 * 109.47104 * 209.99667 * 10 8 6 13 13 H 1.48497 * 109.47147 * 329.99774 * 10 8 6 14 14 C 1.46493 * 120.00239 * 90.00275 * 5 4 3 15 15 C 1.53041 * 109.46116 * 244.46846 * 14 5 4 16 16 C 1.53195 * 109.31273 * 178.62541 * 15 14 5 17 17 N 1.46923 * 108.77328 * 54.63604 * 16 15 14 18 18 C 1.34777 * 120.62938 * 126.36739 * 17 16 15 19 19 O 1.21618 * 119.99960 * 5.33072 * 18 17 16 20 20 C 1.47417 * 120.00137 * 185.32454 * 18 17 16 21 21 C 1.36097 * 126.44861 * 173.75345 * 20 18 17 22 22 O 1.34258 * 106.95007 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22562 * 359.97438 * 22 21 20 24 24 C 1.50695 * 125.37792 * 179.97438 * 23 22 21 25 25 N 1.29935 * 109.24470 * 359.76019 * 23 22 21 26 26 C 1.46928 * 118.74212 * 306.64441 * 17 16 15 27 27 C 1.52754 * 109.00820 * 53.30500 * 26 17 16 28 28 H 1.08998 * 109.47154 * 60.00198 * 1 2 3 29 29 H 1.09007 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47281 * 300.00227 * 1 2 3 31 31 H 1.09002 * 109.47068 * 60.00162 * 3 2 1 32 32 H 1.09006 * 109.47100 * 300.00200 * 3 2 1 33 33 H 1.09000 * 109.46897 * 304.99946 * 4 3 2 34 34 H 1.08997 * 109.46818 * 185.00543 * 4 3 2 35 35 H 0.97005 * 120.00129 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.45666 * 4.44534 * 14 5 4 37 37 H 1.09002 * 109.49411 * 58.67932 * 15 14 5 38 38 H 1.08999 * 109.52531 * 298.59345 * 15 14 5 39 39 H 1.09004 * 109.58939 * 294.85026 * 16 15 14 40 40 H 1.08995 * 109.70277 * 174.49302 * 16 15 14 41 41 H 1.07996 * 126.52316 * 359.93887 * 21 20 18 42 42 H 1.09004 * 109.47430 * 0.02562 * 24 23 22 43 43 H 1.09004 * 109.47061 * 120.02435 * 24 23 22 44 44 H 1.09004 * 109.47430 * 240.02410 * 24 23 22 45 45 H 1.08994 * 109.58460 * 173.14844 * 26 17 16 46 46 H 1.09001 * 109.57930 * 293.56990 * 26 17 16 47 47 H 1.08997 * 109.56520 * 185.55565 * 27 26 17 48 48 H 1.09004 * 109.35562 * 65.50487 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0968 -0.7970 -1.3368 7 1 3.7016 -1.3224 -2.1937 8 6 4.7274 -1.5019 -0.3207 9 7 5.1780 -0.8659 0.7398 10 14 4.9363 -3.3530 -0.4585 11 1 6.2249 -3.6570 -1.1310 12 1 4.9328 -3.9540 0.8994 13 1 3.8174 -3.9196 -1.2535 14 6 4.2864 1.4006 -2.4147 15 6 3.2958 1.0968 -3.5410 16 6 3.6023 1.9972 -4.7419 17 7 5.0126 1.8233 -5.1155 18 6 5.3537 1.5046 -6.3798 19 8 4.5008 1.4533 -7.2453 20 6 6.7607 1.2184 -6.7138 21 6 7.2332 0.7710 -7.9091 22 8 8.5637 0.6446 -7.7817 23 6 8.9018 1.0068 -6.5360 24 6 10.3017 1.0109 -5.9783 25 7 7.8324 1.3580 -5.8870 26 6 6.0435 1.9974 -4.0832 27 6 5.7100 1.1026 -2.8910 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0890 35 1 5.6190 -1.3584 1.4497 36 1 4.2091 2.4517 -2.1367 37 1 2.2803 1.2871 -3.1935 38 1 3.3894 0.0518 -3.8365 39 1 3.4209 3.0381 -4.4740 40 1 2.9650 1.7196 -5.5814 41 1 6.6489 0.5576 -8.7920 42 1 10.9994 0.6739 -6.7450 43 1 10.5654 2.0214 -5.6660 44 1 10.3531 0.3405 -5.1203 45 1 7.0163 1.7177 -4.4876 46 1 6.0652 3.0383 -3.7605 47 1 6.4128 1.2969 -2.0809 48 1 5.7814 0.0575 -3.1925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277399217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:11 Heat of formation + Delta-G solvation = -16.864394 kcal Electronic energy + Delta-G solvation = -30729.185976 eV Core-core repulsion = 26594.689469 eV Total energy + Delta-G solvation = -4134.496508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.58143 -39.72335 -37.55534 -36.73645 -35.25153 -34.70375 -32.46163 -31.85123 -30.50237 -30.45800 -28.19773 -27.87869 -25.59667 -25.24749 -23.99853 -22.83241 -22.59754 -21.63045 -20.61175 -19.90544 -19.05080 -17.52489 -17.06098 -16.75399 -16.14095 -15.72611 -15.60686 -14.98413 -14.80937 -14.76077 -14.39616 -14.12266 -13.94748 -13.75155 -13.47763 -13.38661 -13.38577 -13.11145 -12.93907 -12.74341 -12.41029 -11.89290 -11.73728 -11.49083 -11.37245 -11.32276 -10.86566 -10.79868 -10.69316 -10.63097 -10.42333 -10.22504 -10.01126 -9.88889 -9.66628 -9.61021 -9.15287 -9.11460 -8.71788 -8.33415 -8.26482 -6.31874 -5.57511 -3.32365 1.03381 1.89796 2.42900 3.14068 3.39460 3.44054 3.50363 3.53685 3.74603 4.57923 4.61523 4.65685 4.77486 5.05883 5.13273 5.26448 5.34992 5.37416 5.48478 5.53024 5.58329 5.66023 5.74662 5.80030 5.81153 5.85251 5.90619 6.02766 6.12386 6.15386 6.21850 6.25469 6.39262 6.50610 6.60302 6.68932 6.77333 6.83649 6.86383 7.02176 7.23519 7.32505 7.36805 7.71007 7.83658 8.05191 8.18603 8.29353 8.79091 9.38149 9.94835 10.54461 11.37929 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.003695 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.959173 B = 7575.993394 C = 8765.717263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.047 3.953 4 C 0.134 3.866 5 N -0.574 5.574 6 C -0.226 4.226 7 H 0.052 0.948 8 C 0.021 3.979 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.176 3.824 15 C -0.139 4.139 16 C 0.113 3.887 17 N -0.580 5.580 18 C 0.596 3.404 19 O -0.552 6.552 20 C -0.057 4.057 21 C 0.005 3.995 22 O -0.198 6.198 23 C 0.197 3.803 24 C -0.060 4.060 25 N -0.453 5.453 26 C 0.060 3.940 27 C -0.126 4.126 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.122 0.878 34 H 0.033 0.967 35 H 0.252 0.748 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.146 0.854 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 7.030 -11.307 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C -0.032 4.032 4 C 0.008 3.992 5 N -0.293 5.293 6 C -0.356 4.356 7 H 0.069 0.931 8 C -0.177 4.177 9 N -0.542 5.542 10 Si 0.724 3.276 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.069 3.931 15 C -0.179 4.179 16 C -0.010 4.010 17 N -0.311 5.311 18 C 0.383 3.617 19 O -0.432 6.432 20 C -0.176 4.176 21 C -0.069 4.069 22 O -0.084 6.084 23 C -0.011 4.011 24 C -0.118 4.118 25 N -0.184 5.184 26 C -0.062 4.062 27 C -0.166 4.166 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.139 0.861 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.246 0.754 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.163 0.837 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.550 6.974 -10.948 14.117 hybrid contribution -0.484 -0.971 -0.549 1.216 sum 5.066 6.003 -11.497 13.924 Atomic orbital electron populations 1.22617 0.84554 1.01330 0.98243 1.88230 1.16233 1.27771 1.94762 1.23479 0.99461 0.83909 0.96373 1.21359 0.86909 0.96672 0.94291 1.43661 1.75828 1.02552 1.07281 1.18712 1.29226 0.82112 1.05579 0.93062 1.25349 0.97144 0.97576 0.97637 1.69597 1.41800 1.34307 1.08525 0.86429 0.77881 0.86448 0.76826 1.21605 1.21796 1.20527 1.20377 0.91495 0.93313 0.87934 1.22404 1.00503 0.99912 0.95128 1.21744 0.80896 0.99643 0.98678 1.47963 1.08520 1.66165 1.08403 1.16814 0.84802 0.77229 0.82851 1.90777 1.49860 1.54884 1.47680 1.21850 0.94727 1.08989 0.92066 1.25190 0.80004 1.00883 1.00817 1.84383 1.24261 1.66000 1.33759 1.26611 0.98481 0.96897 0.79112 1.20355 0.84332 1.05465 1.01616 1.70424 0.97466 1.20222 1.30274 1.23056 0.94462 0.99574 0.89135 1.22085 0.98869 0.99962 0.95642 0.95496 0.90845 0.95662 0.96114 0.95934 0.86112 0.94828 0.93749 0.93724 0.91701 0.91492 0.91985 0.89868 0.75403 0.89286 0.88164 0.87932 0.83742 0.92808 0.91135 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.92 10.18 -35.23 -0.36 -8.28 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.13 3.10 5.70 -4.04 -0.02 3.08 16 5 N -0.57 -13.72 2.34 -165.62 -0.39 -14.11 16 6 C -0.23 -6.04 7.57 -15.06 -0.11 -6.15 16 7 H 0.05 1.44 7.10 -52.49 -0.37 1.06 16 8 C 0.02 0.59 5.37 -17.43 -0.09 0.49 16 9 N -0.90 -25.34 10.82 55.49 0.60 -24.74 16 10 Si 0.89 22.13 29.55 -169.99 -5.02 17.11 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.18 3.58 2.60 -67.89 -0.18 3.40 16 15 C -0.14 -2.63 5.37 -26.61 -0.14 -2.77 16 16 C 0.11 1.87 6.42 -3.71 -0.02 1.85 16 17 N -0.58 -9.89 2.98 -174.30 -0.52 -10.41 16 18 C 0.60 10.24 7.68 -12.52 -0.10 10.15 16 19 O -0.55 -10.42 16.33 5.26 0.09 -10.33 16 20 C -0.06 -0.84 6.75 -83.02 -0.56 -1.40 16 21 C 0.00 0.05 11.95 29.96 0.36 0.41 16 22 O -0.20 -2.16 10.73 6.50 0.07 -2.09 16 23 C 0.20 2.14 8.30 -13.08 -0.11 2.03 16 24 C -0.06 -0.38 10.51 36.00 0.38 0.00 16 25 N -0.45 -6.28 7.68 -7.65 -0.06 -6.34 16 26 C 0.06 1.00 6.30 -3.93 -0.02 0.97 16 27 C -0.13 -2.47 5.22 -26.84 -0.14 -2.61 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.12 3.24 5.24 -51.93 -0.27 2.97 16 34 H 0.03 0.72 7.88 -51.93 -0.41 0.31 16 35 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.04 0.86 7.77 -51.93 -0.40 0.46 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.43 7.29 -51.93 -0.38 1.05 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.40 7.03 -51.93 -0.37 1.03 16 41 H 0.23 1.98 8.06 -52.49 -0.42 1.55 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.15 2.34 3.62 -80.29 -0.29 2.05 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 48 H 0.07 1.51 7.62 -51.93 -0.40 1.11 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -32.64 386.59 -6.71 -39.35 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.52 Total: 1.73 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 0.58 Total: 12.29 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.37 Total: -55.60 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.20 Total: -20.70 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.64 -6.71 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277399217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.481 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds