Wall clock time and date at job start Tue Mar 31 2020 19:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34326 * 126.44416 * 2 1 4 4 N 1.34472 * 107.66752 * 179.77143 * 3 2 1 5 5 C 1.30252 * 108.70397 * 0.41898 * 4 3 2 6 6 C 1.50699 * 125.62308 * 179.83847 * 5 4 3 7 7 O 1.42903 * 109.46981 * 89.69801 * 6 5 4 8 8 C 1.42900 * 113.99520 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46642 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00314 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99869 * 179.97438 * 9 8 7 12 12 C 1.46927 * 120.63126 * 354.27823 * 11 9 8 13 13 C 1.53184 * 108.77590 * 126.39201 * 12 11 9 14 14 C 1.53045 * 109.31378 * 54.63437 * 13 12 11 15 15 H 1.09005 * 109.44438 * 58.64634 * 14 13 12 16 16 N 1.46497 * 109.46044 * 178.61581 * 14 13 12 17 17 C 1.36934 * 119.99887 * 275.06508 * 16 14 13 18 18 H 1.07998 * 120.00369 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00189 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99628 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47152 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47507 * 120.00196 * 21 19 17 24 24 H 1.48507 * 109.47168 * 240.00042 * 21 19 17 25 25 C 1.53038 * 109.53887 * 298.63733 * 14 13 12 26 26 C 1.46927 * 120.60219 * 174.26378 * 11 9 8 27 27 H 1.08997 * 109.56826 * 113.80463 * 26 11 9 28 28 C 1.53003 * 109.62006 * 353.37108 * 26 11 9 29 29 O 1.33971 * 108.75708 * 359.57993 * 5 4 3 30 30 H 1.09002 * 109.47184 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47009 * 299.99363 * 1 2 3 32 32 H 1.08996 * 109.47253 * 59.99682 * 1 2 3 33 33 H 1.08003 * 126.16533 * 0.02736 * 3 2 1 34 34 H 1.09002 * 109.47274 * 329.69694 * 6 5 4 35 35 H 1.08998 * 109.47168 * 209.70136 * 6 5 4 36 36 H 1.08995 * 109.48009 * 60.00041 * 8 7 6 37 37 H 1.09007 * 109.47052 * 299.99241 * 8 7 6 38 38 H 1.09001 * 109.58284 * 6.60360 * 12 11 9 39 39 H 1.09001 * 109.70358 * 246.25154 * 12 11 9 40 40 H 1.09001 * 109.50009 * 294.68432 * 13 12 11 41 41 H 1.09000 * 109.52719 * 174.60682 * 13 12 11 42 42 H 0.97000 * 119.99836 * 95.06929 * 16 14 13 43 43 H 0.96992 * 119.99780 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.50013 * 181.31168 * 25 14 13 45 45 H 1.09003 * 109.49743 * 301.38127 * 25 14 13 46 46 H 1.08997 * 109.46998 * 306.24748 * 28 26 11 47 47 H 1.09001 * 109.46669 * 66.24466 * 28 26 11 48 48 H 1.08997 * 109.47535 * 186.24202 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0051 5 6 3.5766 -0.6548 -0.0008 6 6 4.8004 -1.5340 -0.0015 7 8 5.1877 -1.8123 1.3456 8 6 6.3450 -2.6430 1.4578 9 6 6.6607 -2.8707 2.9137 10 8 5.9636 -2.3705 3.7708 11 7 7.7177 -3.6303 3.2633 12 6 8.4967 -4.3445 2.2425 13 6 9.9745 -3.9742 2.4015 14 6 10.4151 -4.2563 3.8398 15 1 10.2559 -5.3102 4.0679 16 7 11.8367 -3.9343 3.9868 17 6 12.7869 -4.8616 3.6515 18 1 12.4884 -5.8301 3.2783 19 6 14.1340 -4.5568 3.7912 20 7 14.4978 -3.3766 4.2466 21 14 15.4302 -5.8214 3.3332 22 1 14.7658 -7.0585 2.8502 23 1 16.2978 -5.2744 2.2592 24 1 16.2576 -6.1364 4.5255 25 6 9.5952 -3.3963 4.8042 26 6 8.1127 -3.7593 4.6726 27 1 7.9573 -4.7864 5.0027 28 6 7.2740 -2.8094 5.5302 29 8 2.3075 -1.0840 -0.0005 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.9822 2.1112 0.0004 34 1 5.6146 -1.0231 -0.5155 35 1 4.5761 -2.4686 -0.5155 36 1 7.1911 -2.1548 0.9743 37 1 6.1530 -3.6008 0.9740 38 1 8.1518 -4.0538 1.2502 39 1 8.3734 -5.4197 2.3717 40 1 10.1102 -2.9154 2.1805 41 1 10.5753 -4.5692 1.7136 42 1 12.1049 -3.0643 4.3217 43 1 15.4390 -3.1638 4.3446 44 1 9.9255 -3.5805 5.8265 45 1 9.7348 -2.3430 4.5610 46 1 7.3500 -1.7976 5.1320 47 1 6.2321 -3.1292 5.5135 48 1 7.6424 -2.8248 6.5559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277756843.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:59 Heat of formation + Delta-G solvation = -25.143016 kcal Electronic energy + Delta-G solvation = -28968.514437 eV Core-core repulsion = 24833.658941 eV Total energy + Delta-G solvation = -4134.855496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.66060 -40.48422 -38.34213 -37.14881 -35.06211 -34.53551 -33.24487 -32.80464 -31.95680 -30.00392 -29.31037 -27.62692 -26.83019 -25.47511 -24.28215 -22.97060 -22.65751 -21.83069 -21.44278 -20.19285 -19.06823 -17.79828 -17.43155 -17.14775 -16.74077 -16.58450 -16.44859 -15.63545 -15.20199 -15.00217 -14.84728 -14.47994 -14.02812 -13.89208 -13.72097 -13.56907 -13.47400 -13.39057 -13.15918 -12.84435 -12.72710 -12.41831 -12.26025 -12.05374 -11.92985 -11.62827 -11.62238 -11.38531 -10.95006 -10.86643 -10.85358 -10.79354 -10.47618 -10.24218 -10.18804 -9.87407 -9.74825 -9.11770 -8.95604 -8.93227 -8.45544 -7.01563 -5.80980 -3.10435 0.96392 2.05815 2.33338 2.60568 2.79725 3.39690 3.45090 3.47586 3.47731 3.95195 4.33167 4.46582 4.53917 4.58479 4.63347 4.71770 4.81974 4.91409 4.93211 5.00233 5.04106 5.14479 5.15254 5.25303 5.31873 5.45546 5.47949 5.52357 5.59153 5.67943 5.79394 5.86797 5.93137 6.00376 6.11806 6.23994 6.30840 6.40056 6.45744 6.49709 6.59544 6.73579 6.87416 7.01066 7.38454 7.47731 7.65382 8.24095 8.37109 9.48474 10.05902 10.40469 11.41533 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.001928 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.018123 B =14522.480845 C =15030.676237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.041 4.041 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.189 3.811 6 C 0.161 3.839 7 O -0.357 6.357 8 C 0.043 3.957 9 C 0.516 3.484 10 O -0.517 6.517 11 N -0.602 5.602 12 C 0.106 3.894 13 C -0.152 4.152 14 C 0.179 3.821 15 H 0.048 0.952 16 N -0.724 5.724 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.135 4.135 26 C 0.150 3.850 27 H 0.072 0.928 28 C -0.137 4.137 29 O -0.194 6.194 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.303 2.997 -10.290 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.094 4.094 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.274 6.274 8 C -0.037 4.037 9 C 0.303 3.697 10 O -0.393 6.393 11 N -0.338 5.338 12 C -0.018 4.018 13 C -0.194 4.194 14 C 0.068 3.932 15 H 0.066 0.934 16 N -0.364 5.364 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.174 4.174 26 C 0.047 3.953 27 H 0.090 0.910 28 C -0.195 4.195 29 O -0.081 6.081 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -26.104 3.474 -9.689 28.060 hybrid contribution 0.602 -0.777 -0.520 1.112 sum -25.502 2.697 -10.209 27.601 Atomic orbital electron populations 1.20315 0.83748 1.04523 1.04036 1.23576 0.95186 0.84543 1.06097 1.23118 0.87595 1.00567 1.07110 1.70425 1.23288 1.09068 1.15992 1.25526 0.83839 0.89945 1.02479 1.20480 0.89073 0.96411 0.85714 1.88059 1.45677 1.69910 1.23789 1.22409 0.89247 0.95662 0.96336 1.19982 0.80810 0.79004 0.89924 1.90773 1.48991 1.49297 1.50216 1.48159 1.29185 1.47992 1.08442 1.21898 0.93024 0.96618 0.90219 1.22696 0.92508 1.02107 1.02049 1.20160 0.85411 0.96675 0.90924 0.93397 1.42437 0.98819 1.17051 1.78083 1.19273 0.86583 0.95233 1.36074 0.91093 1.24759 0.97131 0.96979 1.02056 1.69672 1.15668 1.20655 1.51925 0.86138 0.82011 0.80500 0.77632 1.20562 1.21904 1.21870 1.22313 0.92853 1.01044 1.01238 1.21318 0.94769 0.99867 0.79309 0.91006 1.22195 1.00069 0.99828 0.97367 1.84392 1.17733 1.36621 1.69355 0.90245 0.89057 0.89182 0.79699 0.88326 0.89918 0.89485 0.89916 0.90726 0.91107 0.92077 0.90502 0.78233 0.93521 0.90514 0.91740 0.91793 0.90750 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.01 0.38 0.07 16 2 C -0.04 -0.37 7.39 -35.68 -0.26 -0.63 16 3 C -0.04 -0.44 11.80 -17.78 -0.21 -0.65 16 4 N -0.46 -5.87 11.29 -11.10 -0.13 -6.00 16 5 C 0.19 2.23 7.97 -12.95 -0.10 2.13 16 6 C 0.16 1.48 6.56 36.01 0.24 1.72 16 7 O -0.36 -4.53 9.86 -55.14 -0.54 -5.07 16 8 C 0.04 0.45 4.77 36.01 0.17 0.62 16 9 C 0.52 7.28 7.58 -10.98 -0.08 7.20 16 10 O -0.52 -9.08 12.07 -14.35 -0.17 -9.26 16 11 N -0.60 -8.05 2.97 -165.21 -0.49 -8.54 16 12 C 0.11 1.23 6.35 -3.71 -0.02 1.20 16 13 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 14 C 0.18 3.29 2.73 -67.89 -0.19 3.11 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 N -0.72 -17.36 5.12 -53.38 -0.27 -17.64 16 17 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 21 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C -0.14 -2.21 4.84 -26.61 -0.13 -2.34 16 26 C 0.15 2.15 3.49 -67.59 -0.24 1.91 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 C -0.14 -2.03 7.61 37.16 0.28 -1.74 16 29 O -0.19 -2.21 10.78 5.37 0.06 -2.15 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.19 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 37 H 0.08 0.60 7.71 -51.92 -0.40 0.20 16 38 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.38 9.98 7.80 -40.82 -0.32 9.67 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.05 6.93 -51.93 -0.36 0.69 16 47 H 0.07 1.16 6.57 -51.93 -0.34 0.82 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -35.44 391.47 -8.11 -43.55 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.60 Total: 6.26 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.56 Total: 3.05 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.17 Total: -59.10 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.66 Total: -16.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.44 -8.11 -43.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277756843.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.410 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds