Wall clock time and date at job start Tue Mar 31 2020 19:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34330 * 126.44757 * 2 1 4 4 N 1.34476 * 107.66846 * 179.72156 * 3 2 1 5 5 C 1.30251 * 108.70412 * 0.42634 * 4 3 2 6 6 C 1.50700 * 125.62064 * 179.83507 * 5 4 3 7 7 O 1.42903 * 109.46997 * 89.69258 * 6 5 4 8 8 C 1.42903 * 113.99673 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.46632 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00191 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99429 * 179.97438 * 9 8 7 12 12 C 1.46920 * 120.63428 * 354.92814 * 11 9 8 13 13 C 1.53189 * 108.77736 * 233.62780 * 12 11 9 14 14 C 1.53041 * 109.31469 * 305.36588 * 13 12 11 15 15 H 1.08998 * 109.44651 * 181.37327 * 14 13 12 16 16 N 1.46498 * 109.46092 * 301.34414 * 14 13 12 17 17 C 1.36934 * 120.00028 * 275.06897 * 16 14 13 18 18 H 1.08006 * 119.99948 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00049 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00267 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47231 * 59.99910 * 21 19 17 23 23 H 1.48501 * 109.47280 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47428 * 299.99611 * 21 19 17 25 25 C 1.53039 * 109.53624 * 61.36272 * 14 13 12 26 26 C 1.46999 * 120.61137 * 174.94975 * 11 9 8 27 27 H 1.09001 * 109.58565 * 246.15047 * 26 11 9 28 28 C 1.53007 * 109.62644 * 6.59824 * 26 11 9 29 29 O 1.33968 * 108.75841 * 359.57042 * 5 4 3 30 30 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47142 * 300.00360 * 1 2 3 32 32 H 1.09002 * 109.46583 * 59.99607 * 1 2 3 33 33 H 1.08000 * 126.15968 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47327 * 329.69397 * 6 5 4 35 35 H 1.09002 * 109.47168 * 209.69318 * 6 5 4 36 36 H 1.08994 * 109.47053 * 59.99961 * 8 7 6 37 37 H 1.08995 * 109.47180 * 299.99566 * 8 7 6 38 38 H 1.09003 * 109.58464 * 113.84238 * 12 11 9 39 39 H 1.08998 * 109.58515 * 353.41812 * 12 11 9 40 40 H 1.08998 * 109.49975 * 185.40987 * 13 12 11 41 41 H 1.09008 * 109.52098 * 65.33237 * 13 12 11 42 42 H 0.97005 * 119.99780 * 95.06710 * 16 14 13 43 43 H 0.96998 * 120.00488 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.50159 * 58.58886 * 25 14 13 45 45 H 1.09002 * 109.49626 * 178.65168 * 25 14 13 46 46 H 1.09003 * 109.46510 * 175.68872 * 28 26 11 47 47 H 1.08995 * 109.47544 * 295.68859 * 28 26 11 48 48 H 1.09000 * 109.47394 * 55.69389 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5765 -0.6548 0.0008 6 6 4.8004 -1.5341 0.0013 7 8 5.1869 -1.8118 1.3488 8 6 6.3441 -2.6425 1.4621 9 6 6.6588 -2.8694 2.9184 10 8 5.9611 -2.3687 3.7748 11 7 7.7157 -3.6288 3.2689 12 6 8.5038 -4.3320 2.2477 13 6 8.5784 -5.8166 2.6181 14 6 9.1252 -5.9565 4.0406 15 1 9.2021 -7.0130 4.2975 16 7 10.4508 -5.3377 4.1170 17 6 11.5621 -6.0532 3.7587 18 1 11.4612 -7.0738 3.4201 19 6 12.8182 -5.4670 3.8316 20 7 12.9412 -4.2235 4.2447 21 14 14.3341 -6.4433 3.3435 22 1 14.2163 -6.8638 1.9241 23 1 15.5428 -5.5968 3.5097 24 1 14.4485 -7.6453 4.2079 25 6 8.1802 -5.2605 5.0228 26 6 8.1010 -3.7694 4.6805 27 1 9.0741 -3.3054 4.8415 28 6 7.0542 -3.0940 5.5687 29 8 2.3075 -1.0840 0.0005 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.9822 2.1112 -0.0004 34 1 5.6149 -1.0235 -0.5123 35 1 4.5764 -2.4690 -0.5124 36 1 7.1904 -2.1544 0.9789 37 1 6.1525 -3.6003 0.9786 38 1 9.5097 -3.9138 2.2103 39 1 8.0236 -4.2216 1.2754 40 1 9.2395 -6.3325 1.9218 41 1 7.5819 -6.2554 2.5665 42 1 10.5414 -4.4212 4.4215 43 1 13.8189 -3.8137 4.2953 44 1 7.1873 -5.7040 4.9488 45 1 8.5577 -5.3811 6.0383 46 1 7.3016 -3.2655 6.6164 47 1 7.0442 -2.0227 5.3684 48 1 6.0710 -3.5130 5.3544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277756844.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:02 Heat of formation + Delta-G solvation = -45.744426 kcal Electronic energy + Delta-G solvation = -29421.485445 eV Core-core repulsion = 25285.736606 eV Total energy + Delta-G solvation = -4135.748840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.40142 -41.61195 -39.34902 -38.38345 -35.85549 -35.83794 -34.19300 -33.69879 -33.54603 -30.95908 -30.49512 -28.74179 -27.90362 -26.12481 -25.71088 -25.10031 -23.39427 -23.10934 -22.18282 -21.36580 -19.78246 -19.15294 -18.55267 -18.17166 -17.71101 -17.37297 -17.32660 -16.62857 -16.58044 -15.97103 -15.94737 -15.59446 -15.48889 -15.23935 -14.88315 -14.56971 -14.45276 -14.19475 -14.03933 -13.87387 -13.54888 -13.36254 -13.26704 -13.18596 -12.96381 -12.90647 -12.78653 -12.63747 -12.47559 -12.44710 -12.15600 -11.96677 -11.89926 -11.64263 -11.59198 -11.34932 -10.90758 -10.85648 -10.06206 -9.75352 -9.50608 -8.93026 -7.87614 -5.14838 0.23187 1.33931 1.51498 1.52920 1.58743 1.58867 1.63503 1.87416 2.61087 2.74466 3.19583 3.45919 3.59192 3.77269 3.87427 3.92073 4.00428 4.03953 4.07776 4.09752 4.17155 4.20930 4.26600 4.34152 4.39291 4.47024 4.51720 4.61966 4.67791 4.68269 4.78998 4.83901 4.93008 4.99300 5.08472 5.13552 5.14571 5.23493 5.25933 5.28808 5.37966 5.43238 5.60520 5.69821 5.86516 6.33911 6.49398 6.63109 7.19923 7.41132 8.17416 8.40526 9.35392 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022440 B = 0.002127 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.457089 B =13161.415152 C =13622.944285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.492 5.492 5 C 0.167 3.833 6 C 0.158 3.842 7 O -0.392 6.392 8 C 0.048 3.952 9 C 0.507 3.493 10 O -0.561 6.561 11 N -0.596 5.596 12 C 0.116 3.884 13 C -0.141 4.141 14 C 0.164 3.836 15 H 0.048 0.952 16 N -0.731 5.731 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.966 3.034 22 H -0.277 1.277 23 H -0.303 1.303 24 H -0.283 1.283 25 C -0.122 4.122 26 C 0.149 3.851 27 H 0.052 0.948 28 C -0.119 4.119 29 O -0.208 6.208 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.210 0.790 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.055 0.945 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.372 0.628 43 H 0.247 0.753 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.048 0.952 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.932 3.816 -12.148 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 C -0.207 4.207 4 N -0.223 5.223 5 C -0.039 4.039 6 C 0.082 3.918 7 O -0.311 6.311 8 C -0.031 4.031 9 C 0.295 3.705 10 O -0.440 6.440 11 N -0.330 5.330 12 C -0.006 4.006 13 C -0.181 4.181 14 C 0.056 3.944 15 H 0.066 0.934 16 N -0.372 5.372 17 C -0.361 4.361 18 H 0.095 0.905 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.796 3.204 22 H -0.203 1.203 23 H -0.230 1.230 24 H -0.209 1.209 25 C -0.161 4.161 26 C 0.046 3.954 27 H 0.070 0.930 28 C -0.176 4.176 29 O -0.095 6.095 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.226 0.774 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.206 0.794 43 H 0.056 0.944 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.742 4.284 -11.582 26.762 hybrid contribution 1.057 -0.290 0.090 1.100 sum -22.685 3.995 -11.492 25.742 Atomic orbital electron populations 1.20562 0.80520 1.05445 1.05886 1.24454 0.96885 0.83762 1.04068 1.23613 0.87009 1.02116 1.07925 1.70390 1.24997 1.09973 1.16934 1.26067 0.84670 0.90179 1.02977 1.20790 0.88711 0.97809 0.84513 1.87995 1.46447 1.70599 1.26033 1.22471 0.89591 0.97509 0.93495 1.20725 0.80002 0.78174 0.91558 1.90757 1.50365 1.51034 1.51823 1.48147 1.29296 1.47692 1.07911 1.21786 0.95581 0.92543 0.90719 1.22371 1.01164 0.95465 0.99120 1.20454 0.84466 0.95878 0.93612 0.93355 1.42663 1.01223 1.14149 1.79158 1.19558 0.86181 0.96094 1.34264 0.90466 1.25437 1.00260 0.97311 1.03731 1.69800 1.22791 1.13981 1.55520 0.85316 0.79372 0.77396 0.78270 1.20272 1.23001 1.20943 1.22128 1.00056 0.94187 0.99735 1.21131 0.97460 0.96520 0.80325 0.92964 1.22021 0.97977 1.00265 0.97351 1.84399 1.18001 1.37617 1.69502 0.89771 0.87530 0.86758 0.77354 0.86737 0.86701 0.87412 0.86177 0.92678 0.86910 0.91129 0.90290 0.79441 0.94380 0.89990 0.91374 0.92975 0.93294 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.43 71.24 0.74 0.24 16 2 C -0.04 -0.69 7.39 24.79 0.18 -0.51 16 3 C -0.07 -1.37 11.80 83.39 0.98 -0.39 16 4 N -0.49 -13.02 11.29 -303.83 -3.43 -16.46 16 5 C 0.17 4.05 7.97 88.34 0.70 4.76 16 6 C 0.16 2.88 6.56 71.24 0.47 3.34 16 7 O -0.39 -10.13 9.86 -129.94 -1.28 -11.41 16 8 C 0.05 1.00 4.82 71.24 0.34 1.34 16 9 C 0.51 15.33 7.68 87.66 0.67 16.01 16 10 O -0.56 -21.29 11.91 16.00 0.19 -21.10 16 11 N -0.60 -17.94 2.97 -794.85 -2.36 -20.31 16 12 C 0.12 3.15 6.07 86.36 0.52 3.67 16 13 C -0.14 -4.00 5.78 30.67 0.18 -3.82 16 14 C 0.16 5.81 3.10 45.02 0.14 5.95 16 15 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 16 N -0.73 -33.58 4.31 -322.82 -1.39 -34.97 16 17 C -0.23 -11.78 9.93 84.03 0.83 -10.95 16 18 H 0.08 3.79 7.83 -2.91 -0.02 3.76 16 19 C -0.08 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.97 -57.50 13.06 21.65 0.28 -57.21 16 21 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 C -0.12 -3.88 5.07 30.67 0.16 -3.72 16 26 C 0.15 5.02 3.20 44.96 0.14 5.16 16 27 H 0.05 2.07 6.64 -2.39 -0.02 2.06 16 28 C -0.12 -3.95 7.60 71.98 0.55 -3.40 16 29 O -0.21 -4.81 10.78 -3.76 -0.04 -4.85 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.21 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.77 8.11 -2.39 -0.02 1.75 16 37 H 0.12 1.58 7.48 -2.39 -0.02 1.56 16 38 H 0.05 1.90 7.74 -2.39 -0.02 1.88 16 39 H 0.11 2.04 5.96 -2.39 -0.01 2.03 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.37 18.85 6.06 -92.70 -0.56 18.29 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.80 6.77 -2.39 -0.02 1.78 16 48 H 0.06 2.14 6.74 -2.39 -0.02 2.12 16 Total: -1.00 -76.89 387.13 1.49 -75.39 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.41 Total: 30.29 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 7.09 Total: 14.02 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -6.90 Total: -128.94 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.13 Total: -37.36 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -76.89 1.49 -75.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277756844.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.650 kcal (2) G-P(sol) polarization free energy of solvation -76.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds