Wall clock time and date at job start Tue Mar 31 2020 21:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47076 * 2 1 4 4 C 1.38355 * 120.27460 * 270.02247 * 3 2 1 5 5 N 1.31883 * 121.18723 * 179.70040 * 4 3 2 6 6 C 1.32238 * 121.79889 * 0.57326 * 5 4 3 7 7 O 1.35421 * 119.80074 * 179.71011 * 6 5 4 8 8 C 1.40283 * 120.39692 * 359.43135 * 6 5 4 9 9 C 1.47521 * 120.59471 * 180.24878 * 8 6 5 10 10 O 1.21599 * 120.00270 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00514 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00707 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47362 * 180.02562 * 12 11 9 14 14 N 1.46499 * 109.46900 * 179.97438 * 13 12 11 15 15 C 1.36939 * 119.99893 * 90.00243 * 14 13 12 16 16 H 1.07998 * 119.99676 * 322.26122 * 15 14 13 17 17 C 1.38807 * 120.00206 * 142.25378 * 15 14 13 18 18 N 1.31617 * 119.99951 * 156.38168 * 17 15 14 19 19 Si 1.86802 * 119.99871 * 336.38820 * 17 15 14 20 20 H 1.48496 * 109.47341 * 95.50576 * 19 17 15 21 21 H 1.48502 * 109.46987 * 215.50624 * 19 17 15 22 22 H 1.48498 * 109.47313 * 335.50221 * 19 17 15 23 23 C 1.46499 * 120.00182 * 269.99840 * 14 13 12 24 24 C 1.52998 * 109.47058 * 87.90702 * 23 14 13 25 25 O 1.42908 * 109.46919 * 65.70860 * 24 23 14 26 26 C 1.42904 * 113.99903 * 180.02562 * 25 24 23 27 27 C 1.38342 * 120.26834 * 90.00363 * 3 2 1 28 28 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46772 * 299.99794 * 1 2 3 30 30 H 1.09002 * 109.47728 * 59.99598 * 1 2 3 31 31 H 1.09007 * 109.46857 * 240.00753 * 2 1 3 32 32 H 1.08999 * 109.47240 * 120.00244 * 2 1 3 33 33 H 1.08003 * 119.40467 * 359.97438 * 4 3 2 34 34 H 0.96698 * 114.00129 * 269.72728 * 7 6 5 35 35 H 0.97000 * 119.99610 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.46990 * 300.00104 * 12 11 9 37 37 H 1.08998 * 109.46789 * 59.99800 * 12 11 9 38 38 H 1.09001 * 109.47050 * 299.99941 * 13 12 11 39 39 H 1.09000 * 109.46530 * 60.00049 * 13 12 11 40 40 H 0.97004 * 119.99974 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.47021 * 207.90674 * 23 14 13 42 42 H 1.09000 * 109.47055 * 327.90820 * 23 14 13 43 43 H 1.08999 * 109.47444 * 185.70213 * 24 23 14 44 44 H 1.09003 * 109.47486 * 305.71393 * 24 23 14 45 45 H 1.08999 * 109.47078 * 59.99769 * 26 25 24 46 46 H 1.08997 * 109.46943 * 179.97438 * 26 25 24 47 47 H 1.09003 * 109.46455 * 299.99525 * 26 25 24 48 48 H 1.07995 * 120.82462 * 0.04556 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0786 -1.1949 5 7 2.6983 3.3238 -1.2159 6 6 2.9417 3.9958 -0.1033 7 8 3.3921 5.2710 -0.1721 8 6 2.7307 3.3974 1.1479 9 6 2.9956 4.1449 2.3919 10 8 3.4002 5.2903 2.3385 11 7 2.7892 3.5582 3.5876 12 6 3.0518 4.3006 4.8229 13 6 2.7394 3.4116 6.0284 14 7 3.0026 4.1539 7.2637 15 6 2.0072 4.8953 7.8422 16 1 1.3111 5.4415 7.2228 17 6 1.8926 4.9448 9.2247 18 7 1.2879 5.9631 9.7989 19 14 2.5970 3.5663 10.2701 20 1 3.9564 3.9423 10.7346 21 1 1.7181 3.3376 11.4451 22 1 2.6763 2.3231 9.4619 23 6 4.3306 4.1030 7.8802 24 6 5.2132 5.1999 7.2813 25 8 4.6929 6.4807 7.6435 26 6 5.4478 7.5807 7.1314 27 6 2.2648 2.0782 1.1948 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0827 1.5645 -2.1272 34 1 4.3559 5.3473 -0.1923 35 1 2.4668 2.6444 3.6302 36 1 4.1002 4.5973 4.8527 37 1 2.4217 5.1895 4.8535 38 1 1.6911 3.1146 5.9988 39 1 3.3699 2.5231 5.9975 40 1 1.2082 5.9979 10.7650 41 1 4.2382 4.2574 8.9552 42 1 4.7821 3.1292 7.6904 43 1 6.2286 5.0988 7.6644 44 1 5.2234 5.1058 6.1954 45 1 5.4625 7.5356 6.0424 46 1 4.9882 8.5163 7.4498 47 1 6.4682 7.5290 7.5111 48 1 2.0915 1.5858 2.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279056286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:21 Heat of formation + Delta-G solvation = -56.352748 kcal Electronic energy + Delta-G solvation = -29485.545874 eV Core-core repulsion = 25349.337023 eV Total energy + Delta-G solvation = -4136.208851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.10074 -39.07089 -37.59840 -37.41191 -35.89609 -34.60245 -34.32482 -32.68420 -31.58089 -29.73427 -29.37952 -27.80777 -25.65652 -25.11299 -24.35915 -23.77502 -22.51004 -21.68531 -20.82455 -20.16164 -19.04631 -17.49971 -17.43231 -16.85384 -16.25205 -16.05208 -15.43464 -15.38482 -15.19413 -14.93795 -14.68156 -14.39219 -14.31569 -14.09065 -13.74561 -13.62455 -13.41683 -13.37825 -13.22846 -12.59161 -12.47715 -12.37571 -12.08247 -11.88847 -11.73028 -11.72760 -11.43656 -11.18457 -11.01465 -10.72621 -10.65860 -10.28744 -10.19502 -10.18375 -9.78457 -9.58388 -9.56378 -9.11984 -8.93512 -8.68010 -8.44952 -6.89097 -5.91676 -3.34222 0.32431 0.74746 2.76554 3.13589 3.32580 3.34149 3.47709 3.50750 3.59517 4.16949 4.31150 4.40747 4.44859 4.56276 4.59776 4.78036 4.89952 4.92933 4.97592 5.11439 5.27835 5.39290 5.43562 5.47289 5.52941 5.60173 5.65490 5.75647 5.79975 5.82377 5.84775 5.92317 6.00734 6.08423 6.09625 6.14678 6.19776 6.29846 6.49929 6.53466 6.73511 6.78259 7.30086 7.54010 7.61287 7.96060 8.11589 8.28504 8.44448 8.98619 9.76414 10.10299 11.23949 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.002828 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.089111 B = 9898.591453 C =11267.670366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.154 4.154 4 C 0.146 3.854 5 N -0.505 5.505 6 C 0.362 3.638 7 O -0.459 6.459 8 C -0.194 4.194 9 C 0.555 3.445 10 O -0.519 6.519 11 N -0.720 5.720 12 C 0.096 3.904 13 C 0.140 3.860 14 N -0.590 5.590 15 C -0.261 4.261 16 H 0.076 0.924 17 C 0.047 3.953 18 N -0.891 5.891 19 Si 0.871 3.129 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.271 1.271 23 C 0.132 3.868 24 C 0.043 3.957 25 O -0.348 6.348 26 C 0.031 3.969 27 C -0.029 4.029 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.404 0.596 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.028 0.972 44 H 0.040 0.960 45 H 0.031 0.969 46 H 0.079 0.921 47 H 0.026 0.974 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.172 -13.352 -19.228 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.156 4.156 4 C -0.012 4.012 5 N -0.224 5.224 6 C 0.183 3.817 7 O -0.266 6.266 8 C -0.201 4.201 9 C 0.340 3.660 10 O -0.395 6.395 11 N -0.371 5.371 12 C -0.029 4.029 13 C 0.012 3.988 14 N -0.311 5.311 15 C -0.390 4.390 16 H 0.094 0.906 17 C -0.154 4.154 18 N -0.532 5.532 19 Si 0.702 3.298 20 H -0.214 1.214 21 H -0.230 1.230 22 H -0.196 1.196 23 C 0.006 3.994 24 C -0.037 4.037 25 O -0.265 6.265 26 C -0.066 4.066 27 C -0.055 4.055 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.180 0.820 34 H 0.264 0.736 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.044 0.956 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.793 -11.756 -19.683 23.422 hybrid contribution 0.918 -1.406 1.258 2.098 sum 5.711 -13.162 -18.425 23.353 Atomic orbital electron populations 1.21796 0.94255 1.02193 1.02565 1.20469 0.96444 0.91072 1.03598 1.20864 1.02462 0.98666 0.93648 1.22631 0.91994 0.88692 0.97842 1.67336 1.14828 1.08724 1.31477 1.19202 0.91859 0.84373 0.86316 1.84734 1.27778 1.18798 1.95289 1.21270 1.08086 0.95617 0.95129 1.17808 0.78917 0.86346 0.82939 1.90834 1.44919 1.16805 1.86975 1.45995 1.67593 1.17426 1.06127 1.22487 1.01326 0.96978 0.82134 1.21012 0.99954 0.92045 0.85788 1.43880 1.06937 1.55304 1.24975 1.18568 1.08516 1.22017 0.89866 0.90628 1.25331 0.96800 0.96542 0.96732 1.69907 1.45439 1.27886 1.09947 0.87016 0.77578 0.85133 0.80111 1.21430 1.22986 1.19604 1.21390 0.85791 0.93863 0.98352 1.23365 0.95729 0.86279 0.98287 1.88282 1.51419 1.12663 1.74173 1.22653 0.94993 0.91480 0.97486 1.21658 0.92619 0.92222 0.98987 0.91936 0.92264 0.92419 0.90391 0.90410 0.82007 0.73599 0.77220 0.91985 0.90865 0.91849 0.94111 0.92870 0.91499 0.92828 0.95434 0.94236 0.95037 0.90279 0.95596 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.08 -0.37 6.08 -27.88 -0.17 -0.54 16 3 C -0.15 -1.15 5.14 -104.54 -0.54 -1.69 16 4 C 0.15 1.24 10.84 -17.49 -0.19 1.05 16 5 N -0.51 -5.95 10.37 -12.98 -0.13 -6.08 16 6 C 0.36 4.71 7.77 -16.61 -0.13 4.58 16 7 O -0.46 -6.25 11.66 -39.72 -0.46 -6.71 16 8 C -0.19 -2.38 5.90 -104.69 -0.62 -3.00 16 9 C 0.56 8.39 7.77 -12.48 -0.10 8.29 16 10 O -0.52 -9.84 15.19 -16.49 -0.25 -10.09 16 11 N -0.72 -9.82 5.51 -61.35 -0.34 -10.16 16 12 C 0.10 1.65 5.95 -4.04 -0.02 1.62 16 13 C 0.14 2.47 5.83 -4.04 -0.02 2.45 16 14 N -0.59 -13.29 2.04 -173.24 -0.35 -13.64 16 15 C -0.26 -7.15 9.53 -15.06 -0.14 -7.29 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 17 C 0.05 1.34 5.26 -17.43 -0.09 1.25 16 18 N -0.89 -27.30 13.97 55.49 0.78 -26.53 16 19 Si 0.87 21.70 25.15 -169.99 -4.28 17.43 16 20 H -0.29 -7.03 6.66 56.52 0.38 -6.65 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.13 2.76 4.90 -4.04 -0.02 2.75 16 24 C 0.04 0.83 6.28 37.16 0.23 1.06 16 25 O -0.35 -7.86 10.31 -35.23 -0.36 -8.22 16 26 C 0.03 0.55 11.01 101.05 1.11 1.66 16 27 C -0.03 -0.25 9.31 -38.89 -0.36 -0.62 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.40 3.78 9.06 45.56 0.41 4.20 16 35 H 0.39 4.00 6.57 -40.82 -0.27 3.74 16 36 H 0.06 1.12 5.99 -51.93 -0.31 0.81 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 39 H 0.04 0.61 7.91 -51.93 -0.41 0.20 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.07 1.58 3.50 -51.93 -0.18 1.40 16 42 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.73 5.94 -51.93 -0.31 0.42 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.14 0.91 6.51 -52.49 -0.34 0.57 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -36.56 393.75 -6.63 -43.19 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.47 Total: 3.68 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -0.69 Total: 11.19 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.05 Total: -56.40 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.08 Total: -25.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.28 Total: 17.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.56 -6.63 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279056286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.164 kcal (2) G-P(sol) polarization free energy of solvation -36.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds