Wall clock time and date at job start Tue Mar 31 2020 21:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47076 * 2 1 4 4 C 1.38355 * 120.27460 * 270.02247 * 3 2 1 5 5 N 1.31883 * 121.18723 * 179.70040 * 4 3 2 6 6 C 1.32238 * 121.79889 * 0.57326 * 5 4 3 7 7 O 1.35421 * 119.80074 * 179.71011 * 6 5 4 8 8 C 1.40283 * 120.39692 * 359.43135 * 6 5 4 9 9 C 1.47521 * 120.59471 * 180.24878 * 8 6 5 10 10 O 1.21599 * 120.00270 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00514 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00707 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47362 * 180.02562 * 12 11 9 14 14 N 1.46499 * 109.46900 * 179.97438 * 13 12 11 15 15 C 1.36939 * 119.99893 * 90.00243 * 14 13 12 16 16 H 1.07998 * 119.99676 * 322.26122 * 15 14 13 17 17 C 1.38807 * 120.00206 * 142.25378 * 15 14 13 18 18 N 1.31617 * 119.99951 * 156.38168 * 17 15 14 19 19 Si 1.86802 * 119.99871 * 336.38820 * 17 15 14 20 20 H 1.48496 * 109.47341 * 95.50576 * 19 17 15 21 21 H 1.48502 * 109.46987 * 215.50624 * 19 17 15 22 22 H 1.48498 * 109.47313 * 335.50221 * 19 17 15 23 23 C 1.46499 * 120.00182 * 269.99840 * 14 13 12 24 24 C 1.52998 * 109.47058 * 87.90702 * 23 14 13 25 25 O 1.42908 * 109.46919 * 65.70860 * 24 23 14 26 26 C 1.42904 * 113.99903 * 180.02562 * 25 24 23 27 27 C 1.38342 * 120.26834 * 90.00363 * 3 2 1 28 28 H 1.08999 * 109.47433 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46772 * 299.99794 * 1 2 3 30 30 H 1.09002 * 109.47728 * 59.99598 * 1 2 3 31 31 H 1.09007 * 109.46857 * 240.00753 * 2 1 3 32 32 H 1.08999 * 109.47240 * 120.00244 * 2 1 3 33 33 H 1.08003 * 119.40467 * 359.97438 * 4 3 2 34 34 H 0.96698 * 114.00129 * 269.72728 * 7 6 5 35 35 H 0.97000 * 119.99610 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.46990 * 300.00104 * 12 11 9 37 37 H 1.08998 * 109.46789 * 59.99800 * 12 11 9 38 38 H 1.09001 * 109.47050 * 299.99941 * 13 12 11 39 39 H 1.09000 * 109.46530 * 60.00049 * 13 12 11 40 40 H 0.97004 * 119.99974 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.47021 * 207.90674 * 23 14 13 42 42 H 1.09000 * 109.47055 * 327.90820 * 23 14 13 43 43 H 1.08999 * 109.47444 * 185.70213 * 24 23 14 44 44 H 1.09003 * 109.47486 * 305.71393 * 24 23 14 45 45 H 1.08999 * 109.47078 * 59.99769 * 26 25 24 46 46 H 1.08997 * 109.46943 * 179.97438 * 26 25 24 47 47 H 1.09003 * 109.46455 * 299.99525 * 26 25 24 48 48 H 1.07995 * 120.82462 * 0.04556 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0786 -1.1949 5 7 2.6983 3.3238 -1.2159 6 6 2.9417 3.9958 -0.1033 7 8 3.3921 5.2710 -0.1721 8 6 2.7307 3.3974 1.1479 9 6 2.9956 4.1449 2.3919 10 8 3.4002 5.2903 2.3385 11 7 2.7892 3.5582 3.5876 12 6 3.0518 4.3006 4.8229 13 6 2.7394 3.4116 6.0284 14 7 3.0026 4.1539 7.2637 15 6 2.0072 4.8953 7.8422 16 1 1.3111 5.4415 7.2228 17 6 1.8926 4.9448 9.2247 18 7 1.2879 5.9631 9.7989 19 14 2.5970 3.5663 10.2701 20 1 3.9564 3.9423 10.7346 21 1 1.7181 3.3376 11.4451 22 1 2.6763 2.3231 9.4619 23 6 4.3306 4.1030 7.8802 24 6 5.2132 5.1999 7.2813 25 8 4.6929 6.4807 7.6435 26 6 5.4478 7.5807 7.1314 27 6 2.2648 2.0782 1.1948 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0827 1.5645 -2.1272 34 1 4.3559 5.3473 -0.1923 35 1 2.4668 2.6444 3.6302 36 1 4.1002 4.5973 4.8527 37 1 2.4217 5.1895 4.8535 38 1 1.6911 3.1146 5.9988 39 1 3.3699 2.5231 5.9975 40 1 1.2082 5.9979 10.7650 41 1 4.2382 4.2574 8.9552 42 1 4.7821 3.1292 7.6904 43 1 6.2286 5.0988 7.6644 44 1 5.2234 5.1058 6.1954 45 1 5.4625 7.5356 6.0424 46 1 4.9882 8.5163 7.4498 47 1 6.4682 7.5290 7.5111 48 1 2.0915 1.5858 2.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279056286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:20 Heat of formation + Delta-G solvation = -86.597095 kcal Electronic energy + Delta-G solvation = -29486.857367 eV Core-core repulsion = 25349.337023 eV Total energy + Delta-G solvation = -4137.520344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.97266 -40.22304 -39.08038 -38.40817 -37.49989 -35.76530 -35.18882 -33.86604 -33.33909 -31.12943 -30.09455 -29.40552 -27.18480 -26.23147 -25.28280 -24.96601 -23.77765 -22.70029 -22.37924 -21.35713 -19.94048 -18.85415 -18.42405 -18.30032 -17.69352 -17.13970 -17.04019 -16.66101 -16.42439 -16.27384 -15.87808 -15.66760 -15.42080 -15.22261 -14.93937 -14.74077 -14.49845 -14.35945 -14.22709 -14.11643 -13.96167 -13.58786 -13.23996 -13.01917 -12.90796 -12.80096 -12.56576 -12.42339 -12.33321 -12.31326 -11.87830 -11.80390 -11.69374 -11.42834 -11.26354 -11.01133 -10.58339 -10.47213 -10.40143 -10.11628 -9.78506 -8.77585 -8.08594 -5.47955 -0.50376 0.01759 1.38015 1.46696 1.58013 1.76009 1.99509 2.47650 2.52028 2.73201 3.09740 3.11310 3.41663 3.55665 3.66252 3.69845 3.85155 4.12023 4.16314 4.22145 4.28635 4.36325 4.39472 4.49992 4.52294 4.55817 4.56569 4.62683 4.64965 4.69872 4.74950 4.83746 4.84463 4.93549 4.98944 5.13305 5.17965 5.19873 5.35461 5.38608 5.41736 5.52216 6.01182 6.26336 6.43563 6.53772 6.54501 6.79074 7.04955 7.16282 7.70699 8.08118 9.11811 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013715 B = 0.002828 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.089111 B = 9898.591453 C =11267.670366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.141 4.141 4 C 0.148 3.852 5 N -0.528 5.528 6 C 0.341 3.659 7 O -0.483 6.483 8 C -0.212 4.212 9 C 0.554 3.446 10 O -0.567 6.567 11 N -0.704 5.704 12 C 0.116 3.884 13 C 0.141 3.859 14 N -0.601 5.601 15 C -0.243 4.243 16 H 0.026 0.974 17 C -0.015 4.015 18 N -0.950 5.950 19 Si 0.944 3.056 20 H -0.280 1.280 21 H -0.314 1.314 22 H -0.243 1.243 23 C 0.123 3.877 24 C 0.042 3.958 25 O -0.399 6.399 26 C 0.030 3.970 27 C -0.022 4.022 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.196 0.804 34 H 0.415 0.585 35 H 0.414 0.586 36 H 0.055 0.945 37 H 0.024 0.976 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.258 0.742 41 H 0.041 0.959 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 -17.878 -20.491 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.143 4.143 4 C -0.009 4.009 5 N -0.246 5.246 6 C 0.162 3.838 7 O -0.292 6.292 8 C -0.219 4.219 9 C 0.341 3.659 10 O -0.447 6.447 11 N -0.357 5.357 12 C -0.011 4.011 13 C 0.015 3.985 14 N -0.323 5.323 15 C -0.372 4.372 16 H 0.043 0.957 17 C -0.211 4.211 18 N -0.594 5.594 19 Si 0.773 3.227 20 H -0.208 1.208 21 H -0.243 1.243 22 H -0.166 1.166 23 C -0.002 4.002 24 C -0.037 4.037 25 O -0.317 6.317 26 C -0.067 4.067 27 C -0.048 4.048 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.213 0.787 34 H 0.276 0.724 35 H 0.252 0.748 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.277 -16.358 -20.993 27.344 hybrid contribution 0.445 0.000 1.443 1.510 sum 6.722 -16.358 -19.550 26.362 Atomic orbital electron populations 1.21812 0.94415 1.02847 1.01902 1.20563 0.96041 0.89071 1.05461 1.21196 1.00626 0.99866 0.92597 1.23319 0.90155 0.87639 0.99818 1.67370 1.15957 1.10244 1.31062 1.19388 0.92937 0.84381 0.87125 1.84679 1.29006 1.20094 1.95450 1.21011 1.10680 0.96997 0.93166 1.18275 0.77739 0.85918 0.83958 1.90805 1.47157 1.19048 1.87697 1.45701 1.67270 1.18051 1.04675 1.21988 0.99723 0.95659 0.83691 1.21151 1.01120 0.92826 0.83394 1.43945 1.06796 1.55465 1.26141 1.18324 1.08396 1.21043 0.89475 0.95669 1.25995 0.98260 0.98651 0.98200 1.70072 1.48976 1.30347 1.09973 0.85850 0.76527 0.82477 0.77895 1.20794 1.24286 1.16630 1.21591 0.85248 0.96647 0.96738 1.23413 0.96789 0.84727 0.98764 1.88205 1.53667 1.14710 1.75164 1.22766 0.95997 0.90140 0.97783 1.21981 0.91212 0.90661 1.00925 0.90668 0.93335 0.92768 0.88269 0.88937 0.78682 0.72404 0.74794 0.92649 0.95699 0.91852 0.89387 0.93283 0.94118 0.88273 0.92293 0.93493 0.94566 0.90581 0.92698 0.81215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 71.98 0.71 -0.28 16 2 C -0.07 -0.37 6.08 29.85 0.18 -0.19 16 3 C -0.14 -1.62 5.14 -19.81 -0.10 -1.72 16 4 C 0.15 2.10 10.84 84.71 0.92 3.02 16 5 N -0.53 -11.89 10.37 -308.00 -3.19 -15.09 16 6 C 0.34 8.91 7.77 85.13 0.66 9.57 16 7 O -0.48 -13.91 11.66 -66.34 -0.77 -14.68 16 8 C -0.21 -5.03 5.90 -19.91 -0.12 -5.15 16 9 C 0.55 16.82 7.77 86.69 0.67 17.49 16 10 O -0.57 -22.49 15.19 16.79 0.26 -22.23 16 11 N -0.70 -18.40 5.51 -466.28 -2.57 -20.96 16 12 C 0.12 3.96 5.95 86.38 0.51 4.48 16 13 C 0.14 4.70 5.83 86.38 0.50 5.21 16 14 N -0.60 -26.45 2.04 -702.02 -1.43 -27.89 16 15 C -0.24 -13.64 9.53 84.03 0.80 -12.84 16 16 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 17 C -0.02 -0.87 5.26 84.86 0.45 -0.43 16 18 N -0.95 -60.82 13.97 21.65 0.30 -60.52 16 19 Si 0.94 45.03 25.15 68.60 1.73 46.75 16 20 H -0.28 -12.98 6.66 99.48 0.66 -12.32 16 21 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 22 H -0.24 -10.35 7.11 99.48 0.71 -9.64 16 23 C 0.12 4.81 4.90 86.38 0.42 5.24 16 24 C 0.04 1.54 6.28 71.98 0.45 1.99 16 25 O -0.40 -18.09 10.31 -148.98 -1.54 -19.62 16 26 C 0.03 1.04 11.01 113.37 1.25 2.29 16 27 C -0.02 -0.33 9.31 22.72 0.21 -0.12 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.16 8.09 -2.38 -0.02 0.14 16 32 H 0.09 0.27 8.09 -2.39 -0.02 0.25 16 33 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.41 8.56 9.06 -74.06 -0.67 7.89 16 35 H 0.41 7.22 6.57 -92.71 -0.61 6.62 16 36 H 0.06 1.98 5.99 -2.39 -0.01 1.97 16 37 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 39 H 0.09 2.19 7.91 -2.39 -0.02 2.17 16 40 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.04 1.83 3.50 -2.39 -0.01 1.82 16 42 H 0.10 2.97 7.92 -2.39 -0.02 2.95 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.65 5.94 -2.39 -0.01 1.63 16 45 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.17 1.46 6.51 -2.91 -0.02 1.44 16 Total: -1.00 -86.16 393.75 -0.02 -86.18 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.33 Total: 19.49 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 7.53 Total: 28.57 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -6.90 Total: -124.45 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -2.05 Total: -56.54 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.73 Total: 46.75 kcal Total: -86.16 -0.02 -86.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279056286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.417 kcal (2) G-P(sol) polarization free energy of solvation -86.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds