Wall clock time and date at job start Tue Mar 31 2020 19:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34335 * 126.44341 * 2 1 4 4 N 1.34479 * 107.66950 * 179.87994 * 3 2 1 5 5 C 1.30259 * 108.69874 * 0.38747 * 4 3 2 6 6 C 1.50705 * 125.61399 * 179.74224 * 5 4 3 7 7 O 1.42893 * 109.47141 * 90.02571 * 6 5 4 8 8 C 1.42899 * 114.00033 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47509 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99694 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99989 * 179.97438 * 9 8 7 12 12 C 1.47424 * 125.65004 * 354.17129 * 11 9 8 13 13 C 1.54909 * 104.83295 * 155.83546 * 12 11 9 14 14 C 1.55166 * 101.57915 * 37.01017 * 13 12 11 15 15 C 1.47018 * 125.64399 * 173.86769 * 11 9 8 16 16 H 1.08998 * 109.88496 * 300.51216 * 15 11 9 17 17 C 1.53003 * 109.88383 * 61.67821 * 15 11 9 18 18 N 1.46500 * 109.47101 * 183.46939 * 17 15 11 19 19 C 1.46501 * 119.99829 * 85.29056 * 18 17 15 20 20 C 1.36937 * 120.00110 * 265.29974 * 18 17 15 21 21 H 1.07997 * 120.00232 * 143.83476 * 20 18 17 22 22 C 1.38813 * 119.99640 * 323.82611 * 20 18 17 23 23 N 1.31625 * 119.99766 * 157.89518 * 22 20 18 24 24 Si 1.86796 * 120.00207 * 337.89639 * 22 20 18 25 25 H 1.48506 * 109.47024 * 95.37407 * 24 22 20 26 26 H 1.48506 * 109.47250 * 215.36971 * 24 22 20 27 27 H 1.48494 * 109.47086 * 335.37241 * 24 22 20 28 28 O 1.33962 * 108.76146 * 359.75718 * 5 4 3 29 29 H 1.09000 * 109.46981 * 179.71859 * 1 2 3 30 30 H 1.09001 * 109.47232 * 299.71436 * 1 2 3 31 31 H 1.08996 * 109.47467 * 59.71698 * 1 2 3 32 32 H 1.07998 * 126.16263 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46628 * 210.02035 * 6 5 4 34 34 H 1.08994 * 109.47423 * 330.02076 * 6 5 4 35 35 H 1.09003 * 109.47168 * 299.99904 * 8 7 6 36 36 H 1.09002 * 109.47377 * 59.99588 * 8 7 6 37 37 H 1.09002 * 110.37082 * 274.67564 * 12 11 9 38 38 H 1.09006 * 110.36576 * 36.88954 * 12 11 9 39 39 H 1.08997 * 111.00602 * 155.08473 * 13 12 11 40 40 H 1.09000 * 111.00575 * 278.94394 * 13 12 11 41 41 H 1.09002 * 110.71546 * 82.85908 * 14 13 12 42 42 H 1.08997 * 110.72048 * 206.13560 * 14 13 12 43 43 H 1.08994 * 109.47203 * 303.46942 * 17 15 11 44 44 H 1.08999 * 109.47086 * 63.46886 * 17 15 11 45 45 H 1.09007 * 109.46524 * 85.12884 * 19 18 17 46 46 H 1.09004 * 109.47066 * 205.12263 * 19 18 17 47 47 H 1.08992 * 109.47398 * 325.12807 * 19 18 17 48 48 H 0.97001 * 119.99626 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 0.0027 5 6 3.5765 -0.6547 -0.0040 6 6 4.8005 -1.5339 -0.0094 7 8 5.1879 -1.8192 1.3361 8 6 6.3446 -2.6513 1.4440 9 6 6.6612 -2.8855 2.8986 10 8 5.9646 -2.3892 3.7584 11 7 7.7179 -3.6475 3.2441 12 6 8.5709 -4.4071 2.3119 13 6 9.9209 -4.5712 3.0537 14 6 9.4490 -4.7751 4.5178 15 6 8.2147 -3.8537 4.6123 16 1 8.4966 -2.8972 5.0525 17 6 7.1333 -4.5228 5.4632 18 7 7.6067 -4.6487 6.8439 19 6 7.4448 -3.5323 7.7785 20 6 8.2008 -5.8100 7.2608 21 1 9.0203 -5.7754 7.9633 22 6 7.7493 -7.0317 6.7805 23 7 8.5406 -8.0831 6.8094 24 14 6.0190 -7.1835 6.0933 25 1 6.0573 -7.0276 4.6170 26 1 5.4657 -8.5184 6.4358 27 1 5.1586 -6.1254 6.6807 28 8 2.3075 -1.0839 -0.0058 29 1 -0.3633 -1.0277 -0.0050 30 1 -0.3634 0.5094 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 1.9821 2.1112 -0.0004 33 1 4.5761 -2.4659 -0.5282 34 1 5.6146 -1.0203 -0.5207 35 1 6.1519 -3.6064 0.9553 36 1 7.1909 -2.1612 0.9626 37 1 8.1311 -5.3826 2.1043 38 1 8.7105 -3.8498 1.3855 39 1 10.4616 -5.4457 2.6921 40 1 10.5294 -3.6716 2.9612 41 1 9.1729 -5.8149 4.6926 42 1 10.2199 -4.4564 5.2193 43 1 6.2282 -3.9159 5.4434 44 1 6.9159 -5.5126 5.0619 45 1 6.4524 -3.5753 8.2273 46 1 8.2007 -3.6008 8.5609 47 1 7.5607 -2.5902 7.2427 48 1 8.2253 -8.9367 6.4734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281949869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:01 Heat of formation + Delta-G solvation = -13.546761 kcal Electronic energy + Delta-G solvation = -29667.905118 eV Core-core repulsion = 25533.552473 eV Total energy + Delta-G solvation = -4134.352644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.61671 -40.04061 -38.31801 -36.95193 -35.45416 -35.01748 -33.08778 -31.68314 -31.51774 -30.09406 -29.49177 -27.37158 -26.21094 -25.43202 -25.17216 -22.67856 -22.61429 -21.40152 -21.13696 -20.48149 -18.91725 -17.80401 -17.38304 -16.98520 -16.86090 -16.42775 -16.25092 -15.79019 -15.19442 -14.97751 -14.74191 -14.48262 -14.00746 -13.80552 -13.60388 -13.51193 -13.42607 -13.05671 -12.89959 -12.78166 -12.64142 -12.36175 -12.27255 -12.06015 -12.02180 -11.76340 -11.59069 -11.37127 -10.88716 -10.82738 -10.81498 -10.45993 -10.42745 -10.15928 -10.13606 -9.84829 -9.50796 -9.39707 -9.03131 -8.59165 -8.34305 -6.78090 -6.00126 -3.38074 1.00855 2.10644 2.37410 2.77241 2.88933 3.31439 3.48084 3.55449 3.59333 4.03848 4.37654 4.51989 4.53670 4.63192 4.67311 4.75183 4.80322 4.88637 4.95352 4.98432 5.06283 5.15191 5.18579 5.19389 5.28212 5.41277 5.52404 5.56666 5.69992 5.73018 5.87648 5.96840 6.00904 6.10709 6.30257 6.36054 6.42283 6.54190 6.61280 6.67559 6.75097 6.81347 6.98848 7.07798 7.41878 7.76005 8.05077 8.36651 8.38188 8.99775 9.72276 10.15460 11.15158 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.002670 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.435676 B =10483.015677 C =11160.747836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.046 4.046 4 N -0.458 5.458 5 C 0.189 3.811 6 C 0.161 3.839 7 O -0.356 6.356 8 C 0.051 3.949 9 C 0.525 3.475 10 O -0.515 6.515 11 N -0.613 5.613 12 C 0.096 3.904 13 C -0.137 4.137 14 C -0.107 4.107 15 C 0.122 3.878 16 H 0.067 0.933 17 C 0.129 3.871 18 N -0.609 5.609 19 C 0.125 3.875 20 C -0.260 4.260 21 H 0.081 0.919 22 C 0.036 3.964 23 N -0.900 5.900 24 Si 0.873 3.127 25 H -0.288 1.288 26 H -0.302 1.302 27 H -0.270 1.270 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.007 0.993 46 H 0.045 0.955 47 H 0.028 0.972 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 13.084 -19.648 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.185 4.185 4 N -0.189 5.189 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.273 6.273 8 C -0.029 4.029 9 C 0.311 3.689 10 O -0.390 6.390 11 N -0.349 5.349 12 C -0.027 4.027 13 C -0.175 4.175 14 C -0.145 4.145 15 C 0.018 3.982 16 H 0.085 0.915 17 C 0.002 3.998 18 N -0.333 5.333 19 C -0.020 4.020 20 C -0.389 4.389 21 H 0.098 0.902 22 C -0.164 4.164 23 N -0.542 5.542 24 Si 0.703 3.297 25 H -0.217 1.217 26 H -0.230 1.230 27 H -0.195 1.195 28 O -0.080 6.080 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.025 0.975 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.970 13.604 -19.004 24.389 hybrid contribution -1.478 -0.679 -0.681 1.763 sum -8.448 12.925 -19.685 25.018 Atomic orbital electron populations 1.20318 0.83744 1.04591 1.04023 1.23587 0.95212 0.84522 1.05928 1.23107 0.87598 1.00538 1.07253 1.70414 1.23301 1.09040 1.16143 1.25509 0.83880 0.89924 1.02474 1.20474 0.89039 0.96385 0.85787 1.88085 1.45758 1.69696 1.23785 1.22272 0.89068 0.95662 0.95916 1.19636 0.80197 0.79080 0.89986 1.90744 1.47584 1.49347 1.51288 1.48664 1.29392 1.47264 1.09624 1.22395 0.91545 0.96135 0.92648 1.22833 0.95348 1.02094 0.97238 1.22577 0.95878 1.01937 0.94091 1.22511 0.96410 0.99007 0.80252 0.91457 1.21529 0.94585 0.98640 0.85070 1.44018 1.70984 1.13867 1.04462 1.21073 0.98155 0.89684 0.93092 1.18811 1.11230 0.82064 1.26798 0.90153 1.25394 0.96987 0.95323 0.98745 1.69867 1.34802 1.01241 1.48267 0.87031 0.88301 0.76392 0.77939 1.21673 1.23012 1.19506 1.84401 1.17723 1.36627 1.69249 0.90201 0.89019 0.89185 0.79691 0.89907 0.88426 0.89911 0.89748 0.91197 0.91191 0.90037 0.91222 0.88547 0.90216 0.92924 0.92451 0.97472 0.93588 0.95369 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.43 36.00 0.38 -0.01 16 2 C -0.04 -0.39 7.39 -35.69 -0.26 -0.66 16 3 C -0.05 -0.49 11.80 -17.77 -0.21 -0.70 16 4 N -0.46 -6.19 11.29 -11.10 -0.13 -6.31 16 5 C 0.19 2.42 7.97 -12.94 -0.10 2.31 16 6 C 0.16 1.63 6.56 36.01 0.24 1.87 16 7 O -0.36 -5.10 9.86 -55.14 -0.54 -5.65 16 8 C 0.05 0.61 5.34 36.01 0.19 0.80 16 9 C 0.52 9.09 7.75 -10.98 -0.09 9.00 16 10 O -0.51 -11.39 15.28 -14.35 -0.22 -11.61 16 11 N -0.61 -10.18 3.07 -163.02 -0.50 -10.68 16 12 C 0.10 1.19 6.75 -2.53 -0.02 1.18 16 13 C -0.14 -1.78 7.08 -24.58 -0.17 -1.95 16 14 C -0.11 -1.93 5.69 -24.89 -0.14 -2.07 16 15 C 0.12 2.38 3.17 -66.96 -0.21 2.17 16 16 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.13 3.01 3.80 -4.04 -0.02 2.99 16 18 N -0.61 -15.01 2.39 -181.12 -0.43 -15.44 16 19 C 0.13 2.71 10.72 59.85 0.64 3.35 16 20 C -0.26 -7.13 8.80 -15.06 -0.13 -7.27 16 21 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 22 C 0.04 1.01 4.93 -17.43 -0.09 0.92 16 23 N -0.90 -26.50 13.97 55.49 0.78 -25.72 16 24 Si 0.87 22.91 24.96 -169.99 -4.24 18.66 16 25 H -0.29 -7.35 6.67 56.52 0.38 -6.97 16 26 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 27 H -0.27 -7.32 7.11 56.52 0.40 -6.92 16 28 O -0.19 -2.44 10.77 5.38 0.06 -2.39 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.61 7.47 -51.93 -0.39 0.22 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 2.10 6.98 -51.93 -0.36 1.73 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.05 1.31 6.52 -51.93 -0.34 0.97 16 44 H 0.06 1.44 3.22 -51.93 -0.17 1.28 16 45 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.05 0.94 8.00 -51.93 -0.42 0.52 16 47 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -37.05 391.06 -6.92 -43.97 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.59 Total: -2.64 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 0.01 Total: 11.93 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.28 Total: -58.16 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.70 Total: -19.64 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.24 Total: 18.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.05 -6.92 -43.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281949869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.419 kcal (2) G-P(sol) polarization free energy of solvation -37.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds