Wall clock time and date at job start Tue Mar 31 2020 19:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34335 * 126.44341 * 2 1 4 4 N 1.34479 * 107.66950 * 179.87994 * 3 2 1 5 5 C 1.30259 * 108.69874 * 0.38747 * 4 3 2 6 6 C 1.50705 * 125.61399 * 179.74224 * 5 4 3 7 7 O 1.42893 * 109.47141 * 90.02571 * 6 5 4 8 8 C 1.42899 * 114.00033 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47509 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99694 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99989 * 179.97438 * 9 8 7 12 12 C 1.47424 * 125.65004 * 354.17129 * 11 9 8 13 13 C 1.54909 * 104.83295 * 155.83546 * 12 11 9 14 14 C 1.55166 * 101.57915 * 37.01017 * 13 12 11 15 15 C 1.47018 * 125.64399 * 173.86769 * 11 9 8 16 16 H 1.08998 * 109.88496 * 300.51216 * 15 11 9 17 17 C 1.53003 * 109.88383 * 61.67821 * 15 11 9 18 18 N 1.46500 * 109.47101 * 183.46939 * 17 15 11 19 19 C 1.46501 * 119.99829 * 85.29056 * 18 17 15 20 20 C 1.36937 * 120.00110 * 265.29974 * 18 17 15 21 21 H 1.07997 * 120.00232 * 143.83476 * 20 18 17 22 22 C 1.38813 * 119.99640 * 323.82611 * 20 18 17 23 23 N 1.31625 * 119.99766 * 157.89518 * 22 20 18 24 24 Si 1.86796 * 120.00207 * 337.89639 * 22 20 18 25 25 H 1.48506 * 109.47024 * 95.37407 * 24 22 20 26 26 H 1.48506 * 109.47250 * 215.36971 * 24 22 20 27 27 H 1.48494 * 109.47086 * 335.37241 * 24 22 20 28 28 O 1.33962 * 108.76146 * 359.75718 * 5 4 3 29 29 H 1.09000 * 109.46981 * 179.71859 * 1 2 3 30 30 H 1.09001 * 109.47232 * 299.71436 * 1 2 3 31 31 H 1.08996 * 109.47467 * 59.71698 * 1 2 3 32 32 H 1.07998 * 126.16263 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46628 * 210.02035 * 6 5 4 34 34 H 1.08994 * 109.47423 * 330.02076 * 6 5 4 35 35 H 1.09003 * 109.47168 * 299.99904 * 8 7 6 36 36 H 1.09002 * 109.47377 * 59.99588 * 8 7 6 37 37 H 1.09002 * 110.37082 * 274.67564 * 12 11 9 38 38 H 1.09006 * 110.36576 * 36.88954 * 12 11 9 39 39 H 1.08997 * 111.00602 * 155.08473 * 13 12 11 40 40 H 1.09000 * 111.00575 * 278.94394 * 13 12 11 41 41 H 1.09002 * 110.71546 * 82.85908 * 14 13 12 42 42 H 1.08997 * 110.72048 * 206.13560 * 14 13 12 43 43 H 1.08994 * 109.47203 * 303.46942 * 17 15 11 44 44 H 1.08999 * 109.47086 * 63.46886 * 17 15 11 45 45 H 1.09007 * 109.46524 * 85.12884 * 19 18 17 46 46 H 1.09004 * 109.47066 * 205.12263 * 19 18 17 47 47 H 1.08992 * 109.47398 * 325.12807 * 19 18 17 48 48 H 0.97001 * 119.99626 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 0.0027 5 6 3.5765 -0.6547 -0.0040 6 6 4.8005 -1.5339 -0.0094 7 8 5.1879 -1.8192 1.3361 8 6 6.3446 -2.6513 1.4440 9 6 6.6612 -2.8855 2.8986 10 8 5.9646 -2.3892 3.7584 11 7 7.7179 -3.6475 3.2441 12 6 8.5709 -4.4071 2.3119 13 6 9.9209 -4.5712 3.0537 14 6 9.4490 -4.7751 4.5178 15 6 8.2147 -3.8537 4.6123 16 1 8.4966 -2.8972 5.0525 17 6 7.1333 -4.5228 5.4632 18 7 7.6067 -4.6487 6.8439 19 6 7.4448 -3.5323 7.7785 20 6 8.2008 -5.8100 7.2608 21 1 9.0203 -5.7754 7.9633 22 6 7.7493 -7.0317 6.7805 23 7 8.5406 -8.0831 6.8094 24 14 6.0190 -7.1835 6.0933 25 1 6.0573 -7.0276 4.6170 26 1 5.4657 -8.5184 6.4358 27 1 5.1586 -6.1254 6.6807 28 8 2.3075 -1.0839 -0.0058 29 1 -0.3633 -1.0277 -0.0050 30 1 -0.3634 0.5094 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 1.9821 2.1112 -0.0004 33 1 4.5761 -2.4659 -0.5282 34 1 5.6146 -1.0203 -0.5207 35 1 6.1519 -3.6064 0.9553 36 1 7.1909 -2.1612 0.9626 37 1 8.1311 -5.3826 2.1043 38 1 8.7105 -3.8498 1.3855 39 1 10.4616 -5.4457 2.6921 40 1 10.5294 -3.6716 2.9612 41 1 9.1729 -5.8149 4.6926 42 1 10.2199 -4.4564 5.2193 43 1 6.2282 -3.9159 5.4434 44 1 6.9159 -5.5126 5.0619 45 1 6.4524 -3.5753 8.2273 46 1 8.2007 -3.6008 8.5609 47 1 7.5607 -2.5902 7.2427 48 1 8.2253 -8.9367 6.4734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281949869.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:00 Heat of formation + Delta-G solvation = -41.577950 kcal Electronic energy + Delta-G solvation = -29669.120641 eV Core-core repulsion = 25533.552473 eV Total energy + Delta-G solvation = -4135.568168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.42938 -41.34172 -39.39946 -38.29412 -37.24116 -35.87584 -33.82462 -33.73620 -32.83276 -31.35112 -30.46255 -28.40373 -28.05566 -26.85963 -26.13938 -24.01400 -23.41729 -22.97222 -22.20732 -21.86777 -20.23943 -18.94737 -18.77880 -18.21458 -17.95397 -17.41405 -17.33729 -17.15303 -16.75224 -16.14173 -15.84458 -15.68848 -15.54320 -15.18944 -14.92458 -14.80496 -14.31274 -14.24031 -14.07094 -13.90902 -13.86353 -13.72550 -13.41251 -13.36026 -13.19777 -13.15693 -12.94920 -12.80222 -12.48178 -12.40715 -12.20367 -12.01968 -11.77199 -11.68242 -11.61389 -11.38578 -10.93996 -10.83680 -10.70712 -9.79311 -9.78364 -8.80311 -8.22593 -5.56993 0.20099 1.18009 1.30094 1.31632 1.43632 1.51716 1.61446 1.80505 2.35248 2.72752 3.02840 3.18788 3.40340 3.50854 3.74209 3.74612 3.89840 3.98324 4.03381 4.05858 4.11946 4.17924 4.24106 4.30130 4.41308 4.44537 4.46273 4.58979 4.64731 4.64978 4.65909 4.72718 4.87397 4.95937 4.98315 5.01243 5.08552 5.11701 5.12173 5.19364 5.23302 5.38365 5.56742 5.81724 5.91465 6.13619 6.53189 6.59566 6.90802 7.10908 7.57685 8.03761 8.96493 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.002670 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.435676 B =10483.015677 C =11160.747836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.041 4.041 3 C -0.066 4.066 4 N -0.488 5.488 5 C 0.165 3.835 6 C 0.159 3.841 7 O -0.399 6.399 8 C 0.059 3.941 9 C 0.513 3.487 10 O -0.578 6.578 11 N -0.614 5.614 12 C 0.092 3.908 13 C -0.123 4.123 14 C -0.105 4.105 15 C 0.129 3.871 16 H 0.059 0.941 17 C 0.133 3.867 18 N -0.622 5.622 19 C 0.125 3.875 20 C -0.245 4.245 21 H 0.057 0.943 22 C 0.001 3.999 23 N -0.932 5.932 24 Si 0.919 3.081 25 H -0.278 1.278 26 H -0.301 1.301 27 H -0.287 1.287 28 O -0.212 6.212 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.212 0.788 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.032 0.968 44 H 0.039 0.961 45 H 0.006 0.994 46 H 0.055 0.945 47 H 0.043 0.957 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 13.969 -22.896 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.205 4.205 4 N -0.219 5.219 5 C -0.041 4.041 6 C 0.083 3.917 7 O -0.318 6.318 8 C -0.019 4.019 9 C 0.302 3.698 10 O -0.457 6.457 11 N -0.350 5.350 12 C -0.030 4.030 13 C -0.161 4.161 14 C -0.144 4.144 15 C 0.024 3.976 16 H 0.077 0.923 17 C 0.007 3.993 18 N -0.347 5.347 19 C -0.019 4.019 20 C -0.374 4.374 21 H 0.074 0.926 22 C -0.196 4.196 23 N -0.576 5.576 24 Si 0.750 3.250 25 H -0.206 1.206 26 H -0.230 1.230 27 H -0.213 1.213 28 O -0.099 6.099 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.228 0.772 33 H 0.131 0.869 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.024 0.976 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.984 14.490 -22.305 27.501 hybrid contribution -1.509 -0.856 0.387 1.777 sum -8.493 13.635 -21.919 27.175 Atomic orbital electron populations 1.20557 0.80689 1.05332 1.05910 1.24451 0.96885 0.83831 1.04216 1.23624 0.87026 1.02069 1.07766 1.70384 1.24843 1.09795 1.16902 1.26156 0.84690 0.90296 1.02986 1.20835 0.88850 0.97770 0.84267 1.88013 1.46820 1.70426 1.26518 1.22366 0.90104 0.97694 0.91777 1.20777 0.79136 0.77759 0.92135 1.90711 1.49661 1.51747 1.53550 1.48745 1.29852 1.47372 1.08999 1.22729 0.89989 0.96657 0.93576 1.22836 0.96234 1.04052 0.92939 1.22372 0.95106 0.98857 0.98026 1.22094 0.95408 0.98269 0.81879 0.92312 1.21413 0.95257 0.97526 0.85106 1.44160 1.70915 1.13821 1.05805 1.21139 0.98348 0.89380 0.93047 1.18653 1.10115 0.83098 1.25559 0.92577 1.25700 0.98861 0.95270 0.99803 1.69925 1.35845 1.01700 1.50122 0.86282 0.85166 0.75467 0.78052 1.20560 1.22961 1.21289 1.84403 1.18191 1.37758 1.69512 0.90013 0.87636 0.86564 0.77178 0.86892 0.85819 0.86463 0.85400 0.91014 0.85778 0.88147 0.88942 0.92572 0.91279 0.94961 0.94280 0.97612 0.92581 0.93796 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.43 71.23 0.74 0.12 16 2 C -0.04 -0.78 7.39 24.79 0.18 -0.60 16 3 C -0.07 -1.37 11.80 83.40 0.98 -0.39 16 4 N -0.49 -12.91 11.29 -303.82 -3.43 -16.34 16 5 C 0.16 4.08 7.97 88.34 0.70 4.79 16 6 C 0.16 2.84 6.56 71.24 0.47 3.30 16 7 O -0.40 -10.68 9.86 -129.94 -1.28 -11.97 16 8 C 0.06 1.20 5.34 71.24 0.38 1.58 16 9 C 0.51 16.97 7.75 87.66 0.68 17.65 16 10 O -0.58 -25.95 15.28 16.01 0.24 -25.71 16 11 N -0.61 -19.19 3.07 -788.06 -2.42 -21.60 16 12 C 0.09 1.90 6.75 86.86 0.59 2.48 16 13 C -0.12 -2.77 7.08 31.99 0.23 -2.55 16 14 C -0.11 -3.76 5.69 31.78 0.18 -3.58 16 15 C 0.13 4.99 3.17 45.34 0.14 5.13 16 16 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 17 C 0.13 6.36 3.80 86.38 0.33 6.68 16 18 N -0.62 -31.35 2.39 -726.94 -1.74 -33.09 16 19 C 0.13 5.49 10.72 127.77 1.37 6.86 16 20 C -0.24 -13.76 8.80 84.03 0.74 -13.02 16 21 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 22 C 0.00 0.07 4.93 84.86 0.42 0.49 16 23 N -0.93 -55.89 13.97 21.65 0.30 -55.59 16 24 Si 0.92 48.28 24.96 68.60 1.71 49.99 16 25 H -0.28 -13.95 6.67 99.48 0.66 -13.29 16 26 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 27 H -0.29 -15.72 7.11 99.48 0.71 -15.01 16 28 O -0.21 -5.22 10.77 -3.68 -0.04 -5.26 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.21 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.12 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.13 1.47 7.97 -2.39 -0.02 1.46 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.12 1.32 7.47 -2.38 -0.02 1.30 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 2.47 6.98 -2.39 -0.02 2.46 16 42 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.03 1.66 6.52 -2.39 -0.02 1.64 16 44 H 0.04 2.00 3.22 -2.39 -0.01 1.99 16 45 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 46 H 0.06 2.30 8.00 -2.39 -0.02 2.29 16 47 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 48 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -86.66 391.06 2.40 -84.26 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.91 Total: 6.35 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 8.14 Total: 28.95 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -7.28 Total: -126.62 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.08 Total: -42.93 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.71 Total: 49.99 kcal Total: -86.66 2.40 -84.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281949869.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.683 kcal (2) G-P(sol) polarization free energy of solvation -86.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds