Wall clock time and date at job start Tue Mar 31 2020 19:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34326 * 126.44800 * 2 1 4 4 N 1.34472 * 107.67237 * 179.97438 * 3 2 1 5 5 C 1.30250 * 108.70205 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.62232 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.46998 * 90.02563 * 6 5 4 8 8 C 1.42899 * 114.00105 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47278 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00032 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99759 * 180.02562 * 9 8 7 12 12 C 1.47421 * 125.65018 * 355.15477 * 11 9 8 13 13 C 1.54691 * 104.94288 * 204.07666 * 12 11 9 14 14 C 1.55158 * 101.67658 * 323.28112 * 13 12 11 15 15 C 1.47019 * 125.64736 * 175.47152 * 11 9 8 16 16 H 1.08999 * 109.88519 * 59.47683 * 15 11 9 17 17 C 1.53007 * 109.88226 * 298.47087 * 15 11 9 18 18 N 1.46500 * 109.47597 * 173.80519 * 17 15 11 19 19 C 1.46499 * 119.99892 * 91.83266 * 18 17 15 20 20 C 1.36932 * 119.99744 * 271.84403 * 18 17 15 21 21 H 1.08006 * 120.00020 * 142.79548 * 20 18 17 22 22 C 1.38812 * 120.00217 * 322.78267 * 20 18 17 23 23 N 1.31620 * 119.99937 * 158.44406 * 22 20 18 24 24 Si 1.86801 * 119.99893 * 338.45289 * 22 20 18 25 25 H 1.48502 * 109.47239 * 95.33670 * 24 22 20 26 26 H 1.48503 * 109.47212 * 215.33296 * 24 22 20 27 27 H 1.48501 * 109.47210 * 335.33595 * 24 22 20 28 28 O 1.33966 * 108.76281 * 359.97438 * 5 4 3 29 29 H 1.09002 * 109.47755 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47382 * 300.00049 * 1 2 3 31 31 H 1.08998 * 109.47129 * 59.99861 * 1 2 3 32 32 H 1.08009 * 126.16020 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47445 * 210.03008 * 6 5 4 34 34 H 1.08999 * 109.46718 * 330.02712 * 6 5 4 35 35 H 1.09001 * 109.46654 * 299.99930 * 8 7 6 36 36 H 1.09000 * 109.47437 * 59.99692 * 8 7 6 37 37 H 1.08999 * 110.36742 * 323.00813 * 12 11 9 38 38 H 1.09000 * 110.36731 * 85.33043 * 12 11 9 39 39 H 1.08999 * 111.10414 * 205.10728 * 13 12 11 40 40 H 1.09004 * 110.81601 * 81.31941 * 13 12 11 41 41 H 1.09002 * 110.71431 * 276.96827 * 14 13 12 42 42 H 1.09004 * 110.86941 * 153.76965 * 14 13 12 43 43 H 1.09002 * 109.46765 * 293.80690 * 17 15 11 44 44 H 1.09002 * 109.47014 * 53.79995 * 17 15 11 45 45 H 1.09006 * 109.46689 * 85.97636 * 19 18 17 46 46 H 1.08999 * 109.47383 * 205.97584 * 19 18 17 47 47 H 1.09000 * 109.47331 * 325.98303 * 19 18 17 48 48 H 0.97005 * 119.99473 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5781 0.6477 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8004 -1.5341 0.0003 7 8 5.1867 -1.8128 1.3475 8 6 6.3439 -2.6435 1.4603 9 6 6.6586 -2.8716 2.9163 10 8 5.9610 -2.3715 3.7731 11 7 7.7161 -3.6304 3.2664 12 6 8.5840 -4.3759 2.3367 13 6 9.1951 -5.5141 3.1875 14 6 9.4032 -4.8083 4.5534 15 6 8.1910 -3.8572 4.6391 16 1 7.4011 -4.3161 5.2337 17 6 8.6118 -2.5284 5.2704 18 7 8.9426 -2.7411 6.6816 19 6 10.3224 -3.0389 7.0736 20 6 7.9621 -2.6617 7.6341 21 1 7.9752 -3.3333 8.4799 22 6 6.9514 -1.7180 7.5129 23 7 5.8102 -1.8909 8.1455 24 14 7.2109 -0.2026 6.4518 25 1 6.6521 -0.4451 5.0975 26 1 6.5226 0.9587 7.0705 27 1 8.6641 0.0832 6.3439 28 8 2.3074 -1.0841 0.0002 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9821 2.1112 0.0004 33 1 4.5764 -2.4686 -0.5142 34 1 5.6148 -1.0230 -0.5130 35 1 6.1523 -3.6011 0.9761 36 1 7.1904 -2.1552 0.9774 37 1 7.9960 -4.7882 1.5168 38 1 9.3718 -3.7285 1.9515 39 1 10.1456 -5.8481 2.7714 40 1 8.4970 -6.3462 3.2800 41 1 10.3365 -4.2451 4.5582 42 1 9.3858 -5.5300 5.3701 43 1 9.4848 -2.1380 4.7473 44 1 7.7923 -1.8138 5.1929 45 1 10.8708 -2.1067 7.2092 46 1 10.3216 -3.5993 8.0085 47 1 10.8014 -3.6321 6.2947 48 1 5.1038 -1.2316 8.0604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281949870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:05 Heat of formation + Delta-G solvation = -8.763554 kcal Electronic energy + Delta-G solvation = -29948.155446 eV Core-core repulsion = 25814.010218 eV Total energy + Delta-G solvation = -4134.145229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.51053 -39.96790 -38.26616 -36.86112 -35.40374 -34.91279 -32.98753 -31.74275 -31.33423 -30.08071 -29.43562 -27.28967 -26.42730 -25.33419 -25.00643 -22.66865 -22.51295 -21.29863 -21.10612 -20.65479 -18.84998 -17.71245 -17.26386 -16.90140 -16.70968 -16.31349 -16.17078 -15.70292 -15.19468 -15.09821 -14.77825 -14.20095 -13.97384 -13.83643 -13.52041 -13.42082 -13.22263 -13.13790 -12.83907 -12.70224 -12.62677 -12.57121 -12.34909 -12.09512 -11.87508 -11.50207 -11.47752 -11.14983 -11.08729 -10.94960 -10.71349 -10.56027 -10.41769 -10.21299 -10.03168 -9.58967 -9.43763 -9.24755 -8.92442 -8.30463 -8.27662 -6.68661 -5.82766 -3.26099 1.11076 2.21533 2.47625 2.94214 2.99420 3.62996 3.65405 3.68464 3.77710 4.12374 4.46872 4.58267 4.66763 4.71371 4.76055 4.77144 4.83322 4.90747 4.97338 5.07143 5.08710 5.10840 5.18036 5.25139 5.28497 5.45442 5.52207 5.58452 5.62335 5.66701 5.82812 5.85092 6.03595 6.07534 6.15381 6.21022 6.33764 6.39138 6.51408 6.65802 6.74614 6.78486 6.86518 7.04401 7.52801 7.84213 8.20438 8.51061 8.57801 9.12139 9.88346 10.25182 11.32263 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.003302 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.880366 B = 8476.996075 C =10089.762618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.354 6.354 8 C 0.052 3.948 9 C 0.514 3.486 10 O -0.485 6.485 11 N -0.617 5.617 12 C 0.098 3.902 13 C -0.134 4.134 14 C -0.117 4.117 15 C 0.121 3.879 16 H 0.085 0.915 17 C 0.128 3.872 18 N -0.606 5.606 19 C 0.122 3.878 20 C -0.285 4.285 21 H 0.077 0.923 22 C 0.050 3.950 23 N -0.896 5.896 24 Si 0.866 3.134 25 H -0.255 1.255 26 H -0.306 1.306 27 H -0.278 1.278 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.186 0.814 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.004 0.996 46 H 0.044 0.956 47 H 0.029 0.971 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -3.808 -23.273 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.189 5.189 5 C -0.018 4.018 6 C 0.084 3.916 7 O -0.272 6.272 8 C -0.027 4.027 9 C 0.299 3.701 10 O -0.357 6.357 11 N -0.356 5.356 12 C -0.026 4.026 13 C -0.172 4.172 14 C -0.155 4.155 15 C 0.017 3.983 16 H 0.104 0.896 17 C 0.002 3.998 18 N -0.330 5.330 19 C -0.023 4.023 20 C -0.413 4.413 21 H 0.095 0.905 22 C -0.151 4.151 23 N -0.536 5.536 24 Si 0.696 3.304 25 H -0.181 1.181 26 H -0.235 1.235 27 H -0.204 1.204 28 O -0.080 6.080 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.022 0.978 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.129 -3.037 -22.568 22.800 hybrid contribution -0.433 0.486 -0.749 0.993 sum -1.562 -2.550 -23.318 23.509 Atomic orbital electron populations 1.20311 0.83740 1.04536 1.04014 1.23573 0.95197 0.84527 1.06024 1.23108 0.87588 1.00566 1.07144 1.70409 1.23334 1.09071 1.16045 1.25503 0.83875 0.89949 1.02496 1.20461 0.89051 0.96284 0.85833 1.88129 1.45629 1.69823 1.23571 1.22259 0.89085 0.95382 0.96011 1.19681 0.80637 0.79747 0.90013 1.90922 1.46980 1.46726 1.51064 1.48583 1.29199 1.48866 1.08946 1.22270 0.93818 0.93559 0.92915 1.22748 1.00959 0.97219 0.96282 1.22676 0.97985 0.98146 0.96643 1.22498 0.96140 0.98931 0.80764 0.89644 1.21538 0.98534 0.94555 0.85212 1.43923 1.04204 1.83921 1.00977 1.21167 0.85900 0.97072 0.98144 1.18691 1.03111 1.14486 1.04967 0.90497 1.25343 0.95672 0.97430 0.96700 1.69841 1.03445 1.35326 1.45016 0.87051 0.77713 0.83724 0.81904 1.18095 1.23457 1.20376 1.84391 1.17708 1.36615 1.69328 0.90229 0.88998 0.89237 0.79696 0.90000 0.88516 0.90162 0.89989 0.91204 0.91589 0.90226 0.90800 0.90829 0.90073 0.94674 0.91155 0.97797 0.93704 0.95239 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.43 36.00 0.38 -0.09 16 2 C -0.04 -0.46 7.39 -35.69 -0.26 -0.72 16 3 C -0.04 -0.56 11.80 -17.78 -0.21 -0.77 16 4 N -0.46 -7.03 11.29 -11.10 -0.13 -7.15 16 5 C 0.19 2.70 7.97 -12.95 -0.10 2.60 16 6 C 0.16 1.85 6.56 36.01 0.24 2.08 16 7 O -0.35 -5.74 9.86 -55.14 -0.54 -6.28 16 8 C 0.05 0.69 5.50 36.00 0.20 0.89 16 9 C 0.51 9.78 7.65 -10.99 -0.08 9.69 16 10 O -0.49 -12.49 14.52 -14.35 -0.21 -12.70 16 11 N -0.62 -10.35 3.07 -163.16 -0.50 -10.85 16 12 C 0.10 1.06 6.64 -2.65 -0.02 1.04 16 13 C -0.13 -1.40 7.07 -24.70 -0.17 -1.57 16 14 C -0.12 -1.68 5.42 -24.90 -0.13 -1.81 16 15 C 0.12 2.37 3.08 -66.95 -0.21 2.16 16 16 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 17 C 0.13 2.99 4.06 -4.04 -0.02 2.97 16 18 N -0.61 -15.16 2.40 -181.11 -0.44 -15.59 16 19 C 0.12 2.49 10.45 59.85 0.63 3.11 16 20 C -0.28 -8.46 9.91 -15.06 -0.15 -8.60 16 21 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 22 C 0.05 1.59 5.33 -17.43 -0.09 1.49 16 23 N -0.90 -29.64 13.97 55.49 0.78 -28.86 16 24 Si 0.87 24.98 24.97 -169.99 -4.24 20.74 16 25 H -0.25 -7.55 5.52 56.52 0.31 -7.24 16 26 H -0.31 -8.93 7.11 56.52 0.40 -8.53 16 27 H -0.28 -7.80 7.11 56.52 0.40 -7.40 16 28 O -0.19 -2.69 10.78 5.34 0.06 -2.63 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.19 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.75 7.77 -51.93 -0.40 0.34 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.56 7.51 -51.93 -0.39 0.17 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.02 6.33 -51.93 -0.33 0.69 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.03 0.74 7.92 -51.93 -0.41 0.33 16 44 H 0.07 1.90 1.80 -51.93 -0.09 1.80 16 45 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 46 H 0.04 0.89 8.01 -51.93 -0.42 0.47 16 47 H 0.03 0.49 5.81 -51.93 -0.30 0.19 16 48 H 0.26 8.39 8.31 -40.82 -0.34 8.05 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -42.01 387.12 -6.89 -48.90 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -7.49 Total: -3.87 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -0.02 Total: 12.47 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.29 Total: -62.46 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.69 Total: -21.61 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.24 Total: 20.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -42.01 -6.89 -48.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281949870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.140 kcal (2) G-P(sol) polarization free energy of solvation -42.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds