Wall clock time and date at job start Tue Mar 31 2020 19:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34326 * 126.44800 * 2 1 4 4 N 1.34472 * 107.67237 * 179.97438 * 3 2 1 5 5 C 1.30250 * 108.70205 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.62232 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.46998 * 90.02563 * 6 5 4 8 8 C 1.42899 * 114.00105 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47278 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00032 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99759 * 180.02562 * 9 8 7 12 12 C 1.47421 * 125.65018 * 355.15477 * 11 9 8 13 13 C 1.54691 * 104.94288 * 204.07666 * 12 11 9 14 14 C 1.55158 * 101.67658 * 323.28112 * 13 12 11 15 15 C 1.47019 * 125.64736 * 175.47152 * 11 9 8 16 16 H 1.08999 * 109.88519 * 59.47683 * 15 11 9 17 17 C 1.53007 * 109.88226 * 298.47087 * 15 11 9 18 18 N 1.46500 * 109.47597 * 173.80519 * 17 15 11 19 19 C 1.46499 * 119.99892 * 91.83266 * 18 17 15 20 20 C 1.36932 * 119.99744 * 271.84403 * 18 17 15 21 21 H 1.08006 * 120.00020 * 142.79548 * 20 18 17 22 22 C 1.38812 * 120.00217 * 322.78267 * 20 18 17 23 23 N 1.31620 * 119.99937 * 158.44406 * 22 20 18 24 24 Si 1.86801 * 119.99893 * 338.45289 * 22 20 18 25 25 H 1.48502 * 109.47239 * 95.33670 * 24 22 20 26 26 H 1.48503 * 109.47212 * 215.33296 * 24 22 20 27 27 H 1.48501 * 109.47210 * 335.33595 * 24 22 20 28 28 O 1.33966 * 108.76281 * 359.97438 * 5 4 3 29 29 H 1.09002 * 109.47755 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47382 * 300.00049 * 1 2 3 31 31 H 1.08998 * 109.47129 * 59.99861 * 1 2 3 32 32 H 1.08009 * 126.16020 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47445 * 210.03008 * 6 5 4 34 34 H 1.08999 * 109.46718 * 330.02712 * 6 5 4 35 35 H 1.09001 * 109.46654 * 299.99930 * 8 7 6 36 36 H 1.09000 * 109.47437 * 59.99692 * 8 7 6 37 37 H 1.08999 * 110.36742 * 323.00813 * 12 11 9 38 38 H 1.09000 * 110.36731 * 85.33043 * 12 11 9 39 39 H 1.08999 * 111.10414 * 205.10728 * 13 12 11 40 40 H 1.09004 * 110.81601 * 81.31941 * 13 12 11 41 41 H 1.09002 * 110.71431 * 276.96827 * 14 13 12 42 42 H 1.09004 * 110.86941 * 153.76965 * 14 13 12 43 43 H 1.09002 * 109.46765 * 293.80690 * 17 15 11 44 44 H 1.09002 * 109.47014 * 53.79995 * 17 15 11 45 45 H 1.09006 * 109.46689 * 85.97636 * 19 18 17 46 46 H 1.08999 * 109.47383 * 205.97584 * 19 18 17 47 47 H 1.09000 * 109.47331 * 325.98303 * 19 18 17 48 48 H 0.97005 * 119.99473 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5781 0.6477 0.0006 5 6 3.5765 -0.6548 0.0004 6 6 4.8004 -1.5341 0.0003 7 8 5.1867 -1.8128 1.3475 8 6 6.3439 -2.6435 1.4603 9 6 6.6586 -2.8716 2.9163 10 8 5.9610 -2.3715 3.7731 11 7 7.7161 -3.6304 3.2664 12 6 8.5840 -4.3759 2.3367 13 6 9.1951 -5.5141 3.1875 14 6 9.4032 -4.8083 4.5534 15 6 8.1910 -3.8572 4.6391 16 1 7.4011 -4.3161 5.2337 17 6 8.6118 -2.5284 5.2704 18 7 8.9426 -2.7411 6.6816 19 6 10.3224 -3.0389 7.0736 20 6 7.9621 -2.6617 7.6341 21 1 7.9752 -3.3333 8.4799 22 6 6.9514 -1.7180 7.5129 23 7 5.8102 -1.8909 8.1455 24 14 7.2109 -0.2026 6.4518 25 1 6.6521 -0.4451 5.0975 26 1 6.5226 0.9587 7.0705 27 1 8.6641 0.0832 6.3439 28 8 2.3074 -1.0841 0.0002 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9821 2.1112 0.0004 33 1 4.5764 -2.4686 -0.5142 34 1 5.6148 -1.0230 -0.5130 35 1 6.1523 -3.6011 0.9761 36 1 7.1904 -2.1552 0.9774 37 1 7.9960 -4.7882 1.5168 38 1 9.3718 -3.7285 1.9515 39 1 10.1456 -5.8481 2.7714 40 1 8.4970 -6.3462 3.2800 41 1 10.3365 -4.2451 4.5582 42 1 9.3858 -5.5300 5.3701 43 1 9.4848 -2.1380 4.7473 44 1 7.7923 -1.8138 5.1929 45 1 10.8708 -2.1067 7.2092 46 1 10.3216 -3.5993 8.0085 47 1 10.8014 -3.6321 6.2947 48 1 5.1038 -1.2316 8.0604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281949870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:04 Heat of formation + Delta-G solvation = -43.141324 kcal Electronic energy + Delta-G solvation = -29949.646178 eV Core-core repulsion = 25814.010218 eV Total energy + Delta-G solvation = -4135.635961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.45308 -41.28796 -39.39418 -38.27088 -37.21116 -35.90545 -33.87682 -33.75898 -32.76906 -31.31794 -30.44916 -28.33494 -28.21195 -26.74422 -26.16802 -23.96354 -23.44584 -22.90386 -22.23347 -21.94956 -20.20764 -18.88371 -18.71667 -18.22501 -17.84894 -17.55639 -17.35456 -17.19273 -16.81366 -16.30991 -15.72287 -15.67114 -15.35519 -15.13520 -14.84905 -14.79691 -14.55649 -14.29272 -14.17873 -13.92744 -13.88637 -13.53237 -13.38783 -13.32556 -13.16905 -12.97997 -12.74111 -12.72984 -12.51760 -12.47849 -12.28716 -11.99849 -11.85510 -11.70658 -11.51918 -11.35532 -10.94562 -10.78500 -10.63237 -9.81721 -9.69797 -8.76738 -8.27973 -5.63010 0.17645 1.24933 1.29748 1.32964 1.43135 1.58509 1.62388 1.84701 2.40136 2.74270 3.01756 3.20421 3.47361 3.53584 3.72137 3.77027 3.88053 3.95465 4.02497 4.04458 4.09772 4.15359 4.24555 4.35066 4.37620 4.42353 4.53472 4.56545 4.63120 4.70260 4.75390 4.84914 4.93717 4.96049 5.01817 5.09262 5.09321 5.13225 5.18106 5.20368 5.21768 5.43272 5.48602 5.83157 5.88694 6.09641 6.57107 6.59565 6.95482 7.24253 7.60677 8.00115 8.91069 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.003302 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.880366 B = 8476.996075 C =10089.762618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.040 4.040 3 C -0.070 4.070 4 N -0.493 5.493 5 C 0.164 3.836 6 C 0.160 3.840 7 O -0.406 6.406 8 C 0.062 3.938 9 C 0.497 3.503 10 O -0.573 6.573 11 N -0.616 5.616 12 C 0.090 3.910 13 C -0.121 4.121 14 C -0.110 4.110 15 C 0.124 3.876 16 H 0.024 0.976 17 C 0.122 3.878 18 N -0.620 5.620 19 C 0.120 3.880 20 C -0.259 4.259 21 H 0.049 0.951 22 C -0.006 4.006 23 N -0.944 5.944 24 Si 0.929 3.071 25 H -0.273 1.273 26 H -0.318 1.318 27 H -0.262 1.262 28 O -0.209 6.209 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.210 0.790 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.011 0.989 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -5.127 -27.343 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.208 4.208 4 N -0.224 5.224 5 C -0.042 4.042 6 C 0.083 3.917 7 O -0.325 6.325 8 C -0.016 4.016 9 C 0.286 3.714 10 O -0.451 6.451 11 N -0.352 5.352 12 C -0.031 4.031 13 C -0.158 4.158 14 C -0.148 4.148 15 C 0.019 3.981 16 H 0.043 0.957 17 C -0.004 4.004 18 N -0.345 5.345 19 C -0.023 4.023 20 C -0.389 4.389 21 H 0.067 0.933 22 C -0.203 4.203 23 N -0.588 5.588 24 Si 0.760 3.240 25 H -0.200 1.200 26 H -0.247 1.247 27 H -0.186 1.186 28 O -0.096 6.096 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.227 0.773 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.029 0.971 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.562 -4.400 -26.711 27.116 hybrid contribution -1.214 0.801 0.510 1.541 sum 0.348 -3.599 -26.201 26.449 Atomic orbital electron populations 1.20563 0.80467 1.05474 1.05885 1.24472 0.96958 0.83773 1.04063 1.23620 0.87066 1.02151 1.07960 1.70373 1.24994 1.10050 1.17015 1.26215 0.84831 0.90288 1.02848 1.20857 0.88691 0.97949 0.84157 1.88056 1.46961 1.70831 1.26620 1.22379 0.89734 0.97818 0.91665 1.20970 0.79857 0.78455 0.92147 1.90884 1.50064 1.50277 1.53895 1.48706 1.29162 1.48447 1.08915 1.22765 0.94142 0.93529 0.92639 1.22786 1.03050 0.96642 0.93346 1.22610 0.95680 0.97229 0.99285 1.22100 0.96534 0.97454 0.82050 0.95726 1.21563 0.98219 0.95966 0.84642 1.44075 1.05272 1.84098 1.01096 1.21331 0.83328 0.97982 0.99701 1.18670 1.03456 1.12195 1.04530 0.93302 1.25884 0.95852 1.00039 0.98538 1.69958 1.04489 1.36277 1.48108 0.86046 0.77928 0.80584 0.79427 1.20010 1.24721 1.18606 1.84395 1.18079 1.37636 1.69517 0.89736 0.87879 0.86368 0.77319 0.86207 0.86066 0.85441 0.86094 0.87324 0.88715 0.86048 0.90888 0.89234 0.90864 0.91927 0.94982 0.97120 0.93817 0.90882 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.43 71.23 0.74 -0.06 16 2 C -0.04 -0.90 7.39 24.79 0.18 -0.72 16 3 C -0.07 -1.73 11.80 83.39 0.98 -0.75 16 4 N -0.49 -15.33 11.29 -303.83 -3.43 -18.76 16 5 C 0.16 4.71 7.97 88.34 0.70 5.41 16 6 C 0.16 3.37 6.56 71.24 0.47 3.83 16 7 O -0.41 -12.86 9.86 -129.94 -1.28 -14.14 16 8 C 0.06 1.46 5.50 71.23 0.39 1.85 16 9 C 0.50 18.76 7.65 87.66 0.67 19.43 16 10 O -0.57 -31.19 14.52 16.02 0.23 -30.96 16 11 N -0.62 -19.49 3.07 -788.51 -2.42 -21.91 16 12 C 0.09 1.44 6.64 86.78 0.58 2.02 16 13 C -0.12 -1.88 7.07 31.91 0.23 -1.66 16 14 C -0.11 -2.82 5.42 31.78 0.17 -2.65 16 15 C 0.12 4.83 3.08 45.34 0.14 4.97 16 16 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 17 C 0.12 5.64 4.06 86.38 0.35 5.99 16 18 N -0.62 -31.01 2.40 -726.91 -1.75 -32.76 16 19 C 0.12 4.63 10.45 127.77 1.34 5.97 16 20 C -0.26 -15.95 9.91 84.03 0.83 -15.12 16 21 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 22 C -0.01 -0.40 5.33 84.86 0.45 0.06 16 23 N -0.94 -66.30 13.97 21.65 0.30 -65.99 16 24 Si 0.93 54.98 24.97 68.60 1.71 56.69 16 25 H -0.27 -16.96 5.52 99.48 0.55 -16.42 16 26 H -0.32 -19.00 7.11 99.48 0.71 -18.29 16 27 H -0.26 -14.40 7.11 99.48 0.71 -13.70 16 28 O -0.21 -5.83 10.78 -3.79 -0.04 -5.87 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.21 3.72 8.06 -2.91 -0.02 3.69 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.13 1.72 7.77 -2.39 -0.02 1.70 16 36 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 0.99 7.51 -2.39 -0.02 0.97 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.09 2.02 6.33 -2.39 -0.02 2.01 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.06 2.50 7.92 -2.39 -0.02 2.48 16 44 H 0.03 1.77 1.80 -2.39 0.00 1.77 16 45 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 46 H 0.04 1.68 8.01 -2.39 -0.02 1.66 16 47 H 0.07 2.17 5.81 -2.39 -0.01 2.15 16 48 H 0.26 17.53 8.31 -92.70 -0.77 16.76 16 Total: -1.00 -104.85 387.12 2.36 -102.49 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 0.80 Total: 2.63 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 8.23 Total: 28.58 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -7.29 Total: -139.43 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -1.09 Total: -50.96 kcal Atomic # 14 Polarization: 54.98 SS G_CDS: 1.71 Total: 56.69 kcal Total: -104.85 2.36 -102.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281949870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.349 kcal (2) G-P(sol) polarization free energy of solvation -104.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds