Wall clock time and date at job start Tue Mar 31 2020 20:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33683 * 126.27553 * 2 1 4 4 C 1.30619 * 108.99810 * 179.97438 * 3 2 1 5 5 O 1.33660 * 109.14913 * 359.73043 * 4 3 2 6 6 C 1.35338 * 107.68968 * 0.43002 * 5 4 3 7 7 C 1.46716 * 126.64684 * 179.83898 * 6 5 4 8 8 O 1.21692 * 120.00218 * 172.55753 * 7 6 5 9 9 N 1.34777 * 120.00041 * 352.83290 * 7 6 5 10 10 C 1.46920 * 120.63067 * 3.40998 * 9 7 6 11 11 C 1.52765 * 109.00711 * 233.58775 * 10 9 7 12 12 C 1.53037 * 109.38217 * 305.58357 * 11 10 9 13 13 O 1.42906 * 109.44809 * 181.25487 * 12 11 10 14 14 C 1.42905 * 113.99704 * 89.94248 * 13 12 11 15 15 C 1.53000 * 109.46546 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.47191 * 180.02562 * 16 15 14 18 18 C 1.36933 * 119.99805 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00531 * 359.97438 * 18 17 16 20 20 C 1.38820 * 119.99862 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99679 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00205 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47079 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46953 * 119.99377 * 22 20 18 25 25 H 1.48497 * 109.46660 * 239.99644 * 22 20 18 26 26 C 1.53037 * 109.53780 * 61.24560 * 12 11 10 27 27 C 1.46925 * 120.62935 * 183.69199 * 9 7 6 28 28 H 1.08998 * 109.47156 * 270.04912 * 1 2 3 29 29 H 1.09006 * 109.47127 * 30.04590 * 1 2 3 30 30 H 1.09001 * 109.47492 * 150.04332 * 1 2 3 31 31 H 1.08004 * 125.42185 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.58755 * 353.42016 * 10 9 7 33 33 H 1.09001 * 109.59006 * 113.84471 * 10 9 7 34 34 H 1.09001 * 109.56078 * 185.55457 * 11 10 9 35 35 H 1.08992 * 109.36355 * 65.50203 * 11 10 9 36 36 H 1.08995 * 109.46283 * 301.22479 * 12 11 10 37 37 H 1.09000 * 109.46578 * 299.99765 * 14 13 12 38 38 H 1.08992 * 109.46985 * 59.99906 * 14 13 12 39 39 H 1.08994 * 109.47183 * 299.99539 * 15 14 13 40 40 H 1.08992 * 109.47690 * 60.00173 * 15 14 13 41 41 H 1.09005 * 109.47231 * 300.00017 * 16 15 14 42 42 H 1.09004 * 109.47621 * 59.99481 * 16 15 14 43 43 H 0.96998 * 119.99860 * 359.97438 * 17 16 15 44 44 H 0.97005 * 120.00284 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.49874 * 178.68229 * 26 12 11 46 46 H 1.09007 * 109.50116 * 58.58020 * 26 12 11 47 47 H 1.09000 * 109.59085 * 246.15228 * 27 9 7 48 48 H 1.09000 * 109.58932 * 6.44082 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0777 0.0000 4 6 3.5452 0.6898 0.0006 5 8 3.5889 -0.6461 0.0069 6 6 2.3136 -1.0993 0.0007 7 6 1.8826 -2.5017 0.0009 8 8 0.7043 -2.7761 0.1314 9 7 2.7924 -3.4863 -0.1379 10 6 4.2262 -3.1752 -0.2155 11 6 4.8073 -3.8177 -1.4738 12 6 4.4877 -5.3144 -1.4737 13 8 5.0557 -5.9223 -2.6356 14 6 6.3881 -6.4034 -2.4473 15 6 6.8926 -7.0299 -3.7488 16 6 8.3189 -7.5457 -3.5470 17 7 8.8023 -8.1451 -4.7933 18 6 10.0623 -8.6781 -4.8530 19 1 10.6997 -8.6563 -3.9816 20 6 10.5206 -9.2456 -6.0341 21 7 9.7438 -9.2718 -7.0963 22 14 12.2396 -9.9721 -6.1159 23 1 12.9055 -9.8176 -4.7976 24 1 12.1517 -11.4139 -6.4605 25 1 13.0281 -9.2619 -7.1546 26 6 2.9704 -5.5137 -1.4843 27 6 2.3688 -4.8907 -0.2205 28 1 -0.3633 0.0009 1.0276 29 1 -0.3634 0.8896 -0.5146 30 1 -0.3634 -0.8904 -0.5132 31 1 4.4044 1.3443 0.0003 32 1 4.3637 -2.0949 -0.2618 33 1 4.7346 -3.5731 0.6627 34 1 5.8880 -3.6766 -1.4898 35 1 4.3659 -3.3514 -2.3545 36 1 4.9083 -5.7755 -0.5802 37 1 7.0378 -5.5739 -2.1680 38 1 6.3953 -7.1529 -1.6561 39 1 6.2430 -7.8593 -4.0285 40 1 6.8856 -6.2801 -4.5397 41 1 8.9689 -6.7166 -3.2670 42 1 8.3257 -8.2957 -2.7561 43 1 8.2297 -8.1650 -5.5759 44 1 10.0638 -9.6687 -7.9216 45 1 2.7436 -6.5796 -1.5079 46 1 2.5461 -5.0313 -2.3650 47 1 2.7225 -5.4315 0.6573 48 1 1.2810 -4.9422 -0.2676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282580272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:55 Heat of formation + Delta-G solvation = -40.705327 kcal Electronic energy + Delta-G solvation = -28593.615682 eV Core-core repulsion = 24458.085354 eV Total energy + Delta-G solvation = -4135.530328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.01401 -40.56432 -38.81364 -37.04900 -35.80654 -35.12776 -32.98139 -32.35216 -31.70370 -31.44580 -29.61407 -28.38875 -25.84853 -24.91130 -24.08543 -23.67680 -22.55255 -22.26315 -21.34392 -20.86618 -20.03588 -18.05977 -17.57039 -17.37687 -17.04513 -16.66935 -16.58321 -15.82958 -15.52110 -15.21349 -14.85640 -14.68731 -14.51354 -14.31632 -14.00699 -13.70652 -13.62514 -13.31500 -13.25636 -13.02191 -12.81658 -12.63675 -12.61299 -12.25618 -11.77371 -11.60305 -11.53673 -11.32048 -11.12343 -10.98992 -10.88172 -10.73735 -10.63442 -10.63072 -10.52898 -10.03589 -9.72911 -9.56972 -9.52225 -9.15767 -8.89235 -6.93907 -5.77404 -3.06676 0.30726 1.84249 1.92307 2.46220 2.58937 3.42589 3.46181 3.49987 3.51141 3.52346 3.94768 4.21560 4.32836 4.46017 4.56867 4.59029 4.69340 4.81654 4.84349 4.91437 4.99944 5.07081 5.20955 5.23606 5.25307 5.30437 5.35890 5.38669 5.44327 5.54847 5.56282 5.57820 5.67522 5.74978 5.82653 5.85026 5.98508 6.01862 6.07821 6.25538 6.34637 6.68490 6.80656 6.84625 7.04412 7.22215 7.47176 7.68933 8.41254 9.52308 10.10234 10.44979 11.45574 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024954 B = 0.001657 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.808483 B =16890.240625 C =17533.080048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.084 3.916 3 N -0.493 5.493 4 C 0.199 3.801 5 O -0.185 6.185 6 C -0.117 4.117 7 C 0.610 3.390 8 O -0.515 6.515 9 N -0.602 5.602 10 C 0.093 3.907 11 C -0.157 4.157 12 C 0.090 3.910 13 O -0.379 6.379 14 C 0.068 3.932 15 C -0.125 4.125 16 C 0.157 3.843 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.132 4.132 27 C 0.116 3.884 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.256 0.744 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.557 19.361 19.128 32.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 N -0.222 5.222 4 C -0.026 4.026 5 O -0.073 6.073 6 C -0.171 4.171 7 C 0.397 3.603 8 O -0.393 6.393 9 N -0.334 5.334 10 C -0.029 4.029 11 C -0.196 4.196 12 C 0.032 3.968 13 O -0.298 6.298 14 C -0.009 4.009 15 C -0.163 4.163 16 C 0.029 3.971 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.171 4.171 27 C -0.005 4.005 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.272 0.728 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.244 19.707 19.081 32.944 hybrid contribution 1.601 -0.886 -0.203 1.840 sum -16.643 18.822 18.878 31.427 Atomic orbital electron populations 1.20391 0.85227 1.04351 1.03852 1.22097 0.98444 0.86320 0.97092 1.70391 1.01355 1.31359 1.19090 1.28543 0.97672 0.80186 0.96158 1.84618 1.29206 1.23797 1.69638 1.22860 0.81453 0.96050 1.16762 1.16450 0.85336 0.81377 0.77098 1.90866 1.16041 1.81633 1.50752 1.48028 1.07155 1.06854 1.71357 1.22232 0.79347 1.02820 0.98506 1.22373 1.02112 0.96760 0.98314 1.21991 0.93673 0.91908 0.89249 1.87958 1.29760 1.77378 1.34724 1.22543 0.82463 0.97090 0.98804 1.21670 0.97661 1.00855 0.96075 1.20512 0.90768 0.95165 0.90653 1.42346 1.15813 1.70404 1.09187 1.19283 0.91007 1.30347 0.96586 0.91076 1.24772 0.98490 1.01862 0.95963 1.69677 1.36124 1.50574 1.01739 0.86093 0.84042 0.78599 0.77310 1.20549 1.21816 1.21831 1.22007 0.94215 1.02459 0.98388 1.21714 1.01871 0.79101 0.97842 0.89782 0.90319 0.88844 0.72798 0.87147 0.90603 0.89859 0.90504 0.91937 0.93438 0.93317 0.91158 0.91193 0.96372 0.96342 0.78176 0.93515 0.89335 0.90416 0.90651 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.81 36.01 0.35 -0.27 16 2 C 0.08 0.78 7.16 -82.47 -0.59 0.19 16 3 N -0.49 -4.30 11.26 -10.88 -0.12 -4.42 16 4 C 0.20 1.11 13.21 52.25 0.69 1.80 16 5 O -0.19 -1.32 7.27 4.45 0.03 -1.29 16 6 C -0.12 -1.08 6.88 -36.84 -0.25 -1.33 16 7 C 0.61 6.17 7.66 -12.84 -0.10 6.07 16 8 O -0.52 -6.18 14.32 5.20 0.07 -6.11 16 9 N -0.60 -5.12 2.98 -174.56 -0.52 -5.64 16 10 C 0.09 0.66 6.29 -3.93 -0.02 0.63 16 11 C -0.16 -1.31 5.68 -26.83 -0.15 -1.46 16 12 C 0.09 0.85 2.57 -26.69 -0.07 0.78 16 13 O -0.38 -4.92 9.99 -35.23 -0.35 -5.27 16 14 C 0.07 0.89 5.75 37.16 0.21 1.10 16 15 C -0.12 -2.08 5.70 -26.73 -0.15 -2.23 16 16 C 0.16 3.17 6.26 -4.04 -0.03 3.14 16 17 N -0.73 -19.04 5.60 -59.90 -0.34 -19.37 16 18 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 C -0.13 -1.13 5.73 -26.61 -0.15 -1.28 16 27 C 0.12 0.89 6.43 -3.71 -0.02 0.86 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.79 6.64 -51.93 -0.34 0.44 16 31 H 0.26 0.08 8.06 -52.48 -0.42 -0.34 16 32 H 0.11 0.75 3.80 -54.97 -0.21 0.54 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.65 7.84 -51.93 -0.41 0.25 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.53 7.79 -51.93 -0.40 0.12 16 37 H 0.05 0.57 7.84 -51.93 -0.41 0.16 16 38 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.83 7.02 -51.93 -0.36 0.46 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -34.96 390.39 -7.66 -42.62 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.49 Total: 3.52 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.53 Total: 0.47 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.25 Total: -57.28 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.25 Total: -12.67 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.96 -7.66 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282580272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.918 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds