Wall clock time and date at job start Tue Mar 31 2020 19:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34326 * 126.43948 * 2 1 4 4 N 1.34482 * 107.66781 * 179.77151 * 3 2 1 5 5 C 1.30260 * 108.69616 * 0.42071 * 4 3 2 6 6 C 1.50703 * 125.61697 * 179.83289 * 5 4 3 7 7 O 1.42901 * 109.46747 * 89.69948 * 6 5 4 8 8 C 1.42897 * 113.99907 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47179 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00106 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00025 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99939 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.05801 * 33.57707 * 12 11 9 14 14 C 1.54382 * 110.04569 * 272.10550 * 12 11 9 15 15 C 1.54891 * 104.19620 * 217.09245 * 14 12 11 16 16 C 1.54882 * 102.75057 * 37.96701 * 15 14 12 17 17 C 1.53874 * 110.03322 * 154.99753 * 12 11 9 18 18 H 1.09001 * 110.03136 * 238.61620 * 17 12 11 19 19 C 1.52996 * 110.03327 * 359.97438 * 17 12 11 20 20 N 1.46498 * 109.47059 * 184.30967 * 19 17 12 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 O 1.33963 * 108.76152 * 359.58221 * 5 4 3 30 30 H 1.09010 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47238 * 299.99146 * 1 2 3 32 32 H 1.08997 * 109.47774 * 59.99251 * 1 2 3 33 33 H 1.07994 * 126.17125 * 0.03251 * 3 2 1 34 34 H 1.08996 * 109.47380 * 329.70127 * 6 5 4 35 35 H 1.08996 * 109.47207 * 209.69757 * 6 5 4 36 36 H 1.08993 * 109.47314 * 60.00120 * 8 7 6 37 37 H 1.09007 * 109.47448 * 299.99842 * 8 7 6 38 38 H 0.96994 * 120.00410 * 359.97438 * 11 9 8 39 39 H 1.08997 * 110.45816 * 98.42123 * 14 12 11 40 40 H 1.08997 * 110.61950 * 335.83539 * 14 12 11 41 41 H 1.09003 * 110.75110 * 279.65126 * 15 14 12 42 42 H 1.08993 * 110.75392 * 156.28307 * 15 14 12 43 43 H 1.08999 * 110.48952 * 203.37810 * 16 15 14 44 44 H 1.08997 * 110.48951 * 80.73463 * 16 15 14 45 45 H 1.09004 * 109.47066 * 64.31234 * 19 17 12 46 46 H 1.08994 * 109.46974 * 304.31382 * 19 17 12 47 47 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 48 48 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6479 0.0051 5 6 3.5765 -0.6547 -0.0009 6 6 4.8004 -1.5339 -0.0017 7 8 5.1878 -1.8122 1.3454 8 6 6.3444 -2.6438 1.4576 9 6 6.6602 -2.8714 2.9134 10 8 5.9637 -2.3704 3.7706 11 7 7.7173 -3.6309 3.2630 12 6 8.0246 -3.8517 4.6783 13 1 7.1034 -3.8871 5.2597 14 6 8.9395 -2.7244 5.2032 15 6 9.9025 -3.4414 6.1818 16 6 10.1676 -4.7924 5.4721 17 6 8.8066 -5.1659 4.8491 18 1 8.2644 -5.8394 5.5127 19 6 9.0178 -5.8309 3.4874 20 7 9.6716 -7.1285 3.6739 21 6 9.9586 -7.9128 2.5886 22 1 9.7070 -7.5727 1.5949 23 6 10.5729 -9.1450 2.7657 24 7 10.8791 -9.5596 3.9768 25 14 10.9650 -10.2145 1.2853 26 1 12.3244 -9.8877 0.7846 27 1 10.9139 -11.6450 1.6806 28 1 9.9686 -9.9612 0.2138 29 8 2.3075 -1.0839 -0.0007 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.9821 2.1112 0.0005 34 1 5.6145 -1.0230 -0.5156 35 1 4.5761 -2.4685 -0.5157 36 1 7.1907 -2.1563 0.9738 37 1 6.1517 -3.6015 0.9740 38 1 8.2747 -4.0313 2.5775 39 1 8.3526 -1.9712 5.7288 40 1 9.4967 -2.2696 4.3843 41 1 9.4237 -3.6001 7.1481 42 1 10.8279 -2.8770 6.2960 43 1 10.4770 -5.5482 6.1939 44 1 10.9229 -4.6735 4.6953 45 1 9.6463 -5.1935 2.8654 46 1 8.0535 -5.9764 3.0007 47 1 9.8973 -7.4342 4.5664 48 1 11.3086 -10.4205 4.1006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320151478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:07 Heat of formation + Delta-G solvation = -44.501578 kcal Electronic energy + Delta-G solvation = -28472.616790 eV Core-core repulsion = 24336.921845 eV Total energy + Delta-G solvation = -4135.694946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.65449 -40.16533 -38.56931 -37.43473 -35.05477 -34.39601 -33.61864 -33.11722 -31.44251 -30.17483 -28.67039 -28.37733 -26.53781 -25.39714 -24.56007 -22.65025 -22.51936 -21.45168 -20.98495 -20.43168 -19.05689 -17.97255 -17.59580 -17.22887 -16.90209 -16.54731 -16.43099 -15.75937 -15.19698 -14.99654 -14.96910 -14.64146 -14.43744 -13.99410 -13.79854 -13.61888 -13.54686 -13.44753 -13.03109 -12.94468 -12.81587 -12.55335 -12.27019 -12.15896 -11.63567 -11.62086 -11.33310 -10.90155 -10.86395 -10.86147 -10.80837 -10.50593 -10.41151 -10.31229 -10.19150 -9.99374 -9.79935 -9.70991 -9.07459 -8.99937 -8.87047 -6.98147 -5.81624 -3.10761 0.97168 2.06660 2.33785 2.62331 2.88007 3.39386 3.44253 3.46435 3.55066 4.07235 4.34727 4.49567 4.57196 4.60841 4.65590 4.72417 4.80549 4.82782 4.90192 4.94471 4.95580 5.04619 5.10812 5.15645 5.45081 5.48872 5.50648 5.62268 5.65754 5.69256 5.75366 5.85557 5.92361 5.93245 6.05802 6.15767 6.19788 6.28981 6.42818 6.47709 6.57004 6.61086 6.70817 6.79892 7.38291 7.55219 7.63021 8.25745 8.36852 9.48276 10.05741 10.40209 11.40990 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.002125 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.376927 B =13174.449201 C =14957.606712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.046 4.046 4 N -0.459 5.459 5 C 0.189 3.811 6 C 0.160 3.840 7 O -0.357 6.357 8 C 0.043 3.957 9 C 0.514 3.486 10 O -0.525 6.525 11 N -0.718 5.718 12 C 0.151 3.849 13 H 0.090 0.910 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.108 4.108 18 H 0.082 0.918 19 C 0.157 3.843 20 N -0.728 5.728 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 O -0.193 6.193 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.408 0.592 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.018 0.982 46 H 0.021 0.979 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.394 19.821 -6.776 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.185 4.185 4 N -0.189 5.189 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.274 6.274 8 C -0.037 4.037 9 C 0.298 3.702 10 O -0.400 6.400 11 N -0.374 5.374 12 C 0.046 3.954 13 H 0.108 0.892 14 C -0.171 4.171 15 C -0.163 4.163 16 C -0.149 4.149 17 C -0.127 4.127 18 H 0.101 0.899 19 C 0.029 3.971 20 N -0.373 5.373 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 O -0.080 6.080 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.450 20.470 -6.161 25.803 hybrid contribution 0.093 -1.409 -1.057 1.764 sum -14.357 19.061 -7.218 24.931 Atomic orbital electron populations 1.20321 0.83745 1.04597 1.04020 1.23583 0.95213 0.84531 1.05950 1.23106 0.87610 1.00540 1.07255 1.70421 1.23291 1.09059 1.16149 1.25525 0.83885 0.89920 1.02440 1.20494 0.89047 0.96546 0.85654 1.88061 1.45715 1.69780 1.23860 1.22303 0.89412 0.96184 0.95757 1.20089 0.80915 0.79044 0.90131 1.90725 1.49234 1.48474 1.51587 1.46260 1.30026 1.51680 1.09403 1.21681 0.98540 0.94448 0.80715 0.89235 1.22783 0.97476 0.97562 0.99238 1.22491 0.98848 0.96686 0.98249 1.22353 0.96629 0.96114 0.99787 1.22224 0.96350 0.94916 0.99232 0.89941 1.20683 0.95252 0.88138 0.92997 1.42325 1.71473 1.16200 1.07268 1.19194 1.32494 0.97992 0.87646 0.91244 1.24753 1.01656 0.98015 0.96500 1.69659 1.47319 1.21349 1.19598 0.86193 0.78116 0.80002 0.81861 1.21713 1.21771 1.20801 1.84402 1.17722 1.36606 1.69247 0.90186 0.89050 0.89173 0.79712 0.88335 0.89731 0.89495 0.89369 0.75395 0.91506 0.91286 0.91558 0.91613 0.91181 0.90967 0.96485 0.96138 0.78119 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 36.01 0.38 0.04 16 2 C -0.04 -0.36 7.39 -35.69 -0.26 -0.63 16 3 C -0.05 -0.46 11.80 -17.77 -0.21 -0.67 16 4 N -0.46 -5.82 11.30 -11.10 -0.13 -5.94 16 5 C 0.19 2.25 7.97 -12.94 -0.10 2.15 16 6 C 0.16 1.49 6.56 36.01 0.24 1.73 16 7 O -0.36 -4.54 9.86 -55.14 -0.54 -5.09 16 8 C 0.04 0.44 6.42 36.01 0.23 0.67 16 9 C 0.51 7.16 7.90 -10.98 -0.09 7.08 16 10 O -0.52 -9.61 16.15 -14.35 -0.23 -9.84 16 11 N -0.72 -9.25 4.40 -52.66 -0.23 -9.48 16 12 C 0.15 2.10 3.23 -66.75 -0.22 1.88 16 13 H 0.09 1.35 7.57 -51.93 -0.39 0.96 16 14 C -0.13 -1.66 6.53 -25.01 -0.16 -1.82 16 15 C -0.12 -1.51 6.91 -24.74 -0.17 -1.68 16 16 C -0.11 -1.62 6.05 -25.07 -0.15 -1.77 16 17 C -0.11 -1.66 2.97 -89.50 -0.27 -1.93 16 18 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 19 C 0.16 2.87 4.18 -4.04 -0.02 2.85 16 20 N -0.73 -17.46 5.44 -59.91 -0.33 -17.79 16 21 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 25 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 29 O -0.19 -2.27 10.77 5.39 0.06 -2.21 16 30 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.19 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.41 4.74 5.89 -40.82 -0.24 4.50 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.84 8.06 -51.93 -0.42 0.43 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 45 H 0.02 0.31 7.08 -51.93 -0.37 -0.06 16 46 H 0.02 0.38 7.46 -51.93 -0.39 0.00 16 47 H 0.38 9.83 7.53 -40.82 -0.31 9.52 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 398.95 15.07 6.01 6.01 Total: -1.00 -36.24 398.95 -8.30 -44.54 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -7.56 Total: 8.97 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.05 Total: 0.81 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.04 Total: -59.99 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.72 Total: -17.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.24 -8.30 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320151478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.037 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds