Wall clock time and date at job start Tue Mar 31 2020 19:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34326 * 126.43948 * 2 1 4 4 N 1.34482 * 107.66781 * 179.77151 * 3 2 1 5 5 C 1.30260 * 108.69616 * 0.42071 * 4 3 2 6 6 C 1.50703 * 125.61697 * 179.83289 * 5 4 3 7 7 O 1.42901 * 109.46747 * 89.69948 * 6 5 4 8 8 C 1.42897 * 113.99907 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47179 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00106 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00025 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99939 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.05801 * 33.57707 * 12 11 9 14 14 C 1.54382 * 110.04569 * 272.10550 * 12 11 9 15 15 C 1.54891 * 104.19620 * 217.09245 * 14 12 11 16 16 C 1.54882 * 102.75057 * 37.96701 * 15 14 12 17 17 C 1.53874 * 110.03322 * 154.99753 * 12 11 9 18 18 H 1.09001 * 110.03136 * 238.61620 * 17 12 11 19 19 C 1.52996 * 110.03327 * 359.97438 * 17 12 11 20 20 N 1.46498 * 109.47059 * 184.30967 * 19 17 12 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 O 1.33963 * 108.76152 * 359.58221 * 5 4 3 30 30 H 1.09010 * 109.47189 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47238 * 299.99146 * 1 2 3 32 32 H 1.08997 * 109.47774 * 59.99251 * 1 2 3 33 33 H 1.07994 * 126.17125 * 0.03251 * 3 2 1 34 34 H 1.08996 * 109.47380 * 329.70127 * 6 5 4 35 35 H 1.08996 * 109.47207 * 209.69757 * 6 5 4 36 36 H 1.08993 * 109.47314 * 60.00120 * 8 7 6 37 37 H 1.09007 * 109.47448 * 299.99842 * 8 7 6 38 38 H 0.96994 * 120.00410 * 359.97438 * 11 9 8 39 39 H 1.08997 * 110.45816 * 98.42123 * 14 12 11 40 40 H 1.08997 * 110.61950 * 335.83539 * 14 12 11 41 41 H 1.09003 * 110.75110 * 279.65126 * 15 14 12 42 42 H 1.08993 * 110.75392 * 156.28307 * 15 14 12 43 43 H 1.08999 * 110.48952 * 203.37810 * 16 15 14 44 44 H 1.08997 * 110.48951 * 80.73463 * 16 15 14 45 45 H 1.09004 * 109.47066 * 64.31234 * 19 17 12 46 46 H 1.08994 * 109.46974 * 304.31382 * 19 17 12 47 47 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 48 48 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6479 0.0051 5 6 3.5765 -0.6547 -0.0009 6 6 4.8004 -1.5339 -0.0017 7 8 5.1878 -1.8122 1.3454 8 6 6.3444 -2.6438 1.4576 9 6 6.6602 -2.8714 2.9134 10 8 5.9637 -2.3704 3.7706 11 7 7.7173 -3.6309 3.2630 12 6 8.0246 -3.8517 4.6783 13 1 7.1034 -3.8871 5.2597 14 6 8.9395 -2.7244 5.2032 15 6 9.9025 -3.4414 6.1818 16 6 10.1676 -4.7924 5.4721 17 6 8.8066 -5.1659 4.8491 18 1 8.2644 -5.8394 5.5127 19 6 9.0178 -5.8309 3.4874 20 7 9.6716 -7.1285 3.6739 21 6 9.9586 -7.9128 2.5886 22 1 9.7070 -7.5727 1.5949 23 6 10.5729 -9.1450 2.7657 24 7 10.8791 -9.5596 3.9768 25 14 10.9650 -10.2145 1.2853 26 1 12.3244 -9.8877 0.7846 27 1 10.9139 -11.6450 1.6806 28 1 9.9686 -9.9612 0.2138 29 8 2.3075 -1.0839 -0.0007 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.9821 2.1112 0.0005 34 1 5.6145 -1.0230 -0.5156 35 1 4.5761 -2.4685 -0.5157 36 1 7.1907 -2.1563 0.9738 37 1 6.1517 -3.6015 0.9740 38 1 8.2747 -4.0313 2.5775 39 1 8.3526 -1.9712 5.7288 40 1 9.4967 -2.2696 4.3843 41 1 9.4237 -3.6001 7.1481 42 1 10.8279 -2.8770 6.2960 43 1 10.4770 -5.5482 6.1939 44 1 10.9229 -4.6735 4.6953 45 1 9.6463 -5.1935 2.8654 46 1 8.0535 -5.9764 3.0007 47 1 9.8973 -7.4342 4.5664 48 1 11.3086 -10.4205 4.1006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320151478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:06 Heat of formation + Delta-G solvation = -71.420867 kcal Electronic energy + Delta-G solvation = -28473.784098 eV Core-core repulsion = 24336.921845 eV Total energy + Delta-G solvation = -4136.862254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.41203 -41.28262 -39.58925 -38.46892 -36.18764 -35.85642 -34.75349 -33.72315 -33.26939 -30.90969 -30.15599 -29.32825 -27.47622 -26.30888 -26.03365 -24.19234 -23.39638 -22.22624 -22.04158 -21.53236 -20.35782 -19.25813 -18.76860 -18.27336 -17.88161 -17.43202 -17.29712 -16.85577 -16.47041 -16.29626 -15.94506 -15.79399 -15.39584 -15.22832 -15.01954 -14.91553 -14.63333 -14.41322 -14.14825 -13.88755 -13.47972 -13.34869 -13.24075 -13.10968 -13.00287 -12.83555 -12.72458 -12.46394 -12.33930 -12.15998 -11.92614 -11.75620 -11.70023 -11.66146 -11.53728 -11.42992 -10.92204 -10.89960 -10.89407 -10.06276 -9.77040 -8.96059 -7.91716 -5.20028 0.22365 1.34261 1.50247 1.51399 1.56747 1.59486 1.63037 1.97070 2.58262 2.81396 3.28693 3.42036 3.48365 3.68548 3.73903 3.78223 3.88471 3.99974 4.08073 4.17637 4.20298 4.23830 4.29140 4.40421 4.46454 4.50036 4.53455 4.56539 4.61061 4.67094 4.70154 4.76791 4.93805 4.98205 5.01482 5.09063 5.13790 5.23007 5.25247 5.29044 5.37013 5.49761 5.51784 5.55909 5.81507 6.29861 6.52317 6.61577 7.20943 7.36929 8.13258 8.35349 9.31832 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.002125 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.376927 B =13174.449201 C =14957.606712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.067 4.067 4 N -0.488 5.488 5 C 0.166 3.834 6 C 0.158 3.842 7 O -0.394 6.394 8 C 0.045 3.955 9 C 0.509 3.491 10 O -0.576 6.576 11 N -0.710 5.710 12 C 0.155 3.845 13 H 0.075 0.925 14 C -0.125 4.125 15 C -0.114 4.114 16 C -0.109 4.109 17 C -0.100 4.100 18 H 0.069 0.931 19 C 0.158 3.842 20 N -0.742 5.742 21 C -0.240 4.240 22 H 0.082 0.918 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.972 3.028 26 H -0.288 1.288 27 H -0.301 1.301 28 H -0.267 1.267 29 O -0.211 6.211 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.211 0.789 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.415 0.585 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.025 0.975 47 H 0.373 0.627 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 20.978 -8.612 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.205 4.205 4 N -0.220 5.220 5 C -0.040 4.040 6 C 0.082 3.918 7 O -0.313 6.313 8 C -0.033 4.033 9 C 0.296 3.704 10 O -0.455 6.455 11 N -0.366 5.366 12 C 0.050 3.950 13 H 0.093 0.907 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.119 4.119 18 H 0.087 0.913 19 C 0.031 3.969 20 N -0.384 5.384 21 C -0.372 4.372 22 H 0.100 0.900 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.801 3.199 26 H -0.215 1.215 27 H -0.228 1.228 28 H -0.192 1.192 29 O -0.098 6.098 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.228 0.772 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.255 0.745 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.205 0.795 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.930 21.658 -8.043 27.508 hybrid contribution 0.148 -1.682 -0.479 1.755 sum -14.782 19.975 -8.522 26.271 Atomic orbital electron populations 1.20563 0.80651 1.05358 1.05918 1.24450 0.96883 0.83813 1.04174 1.23620 0.87008 1.02074 1.07796 1.70389 1.24876 1.09790 1.16914 1.26109 0.84659 0.90256 1.03023 1.20803 0.88830 0.97717 0.84477 1.87995 1.46730 1.70463 1.26074 1.22432 0.90121 0.97766 0.92999 1.20821 0.80027 0.77928 0.91588 1.90702 1.50849 1.50531 1.53377 1.46188 1.29971 1.51345 1.09078 1.21544 0.97911 0.94076 0.81492 0.90700 1.22724 0.97170 0.96925 0.99519 1.22444 0.99568 0.95068 0.98100 1.22286 0.95652 0.97294 0.99424 1.22100 0.97047 0.95223 0.97531 0.91269 1.20850 0.94932 0.86204 0.94885 1.42547 1.71828 1.17921 1.06152 1.19660 1.30675 0.98012 0.88809 0.90039 1.25566 1.02782 0.99768 0.98974 1.69822 1.49073 1.21526 1.21652 0.85160 0.78084 0.77536 0.79096 1.21480 1.22793 1.19189 1.84405 1.18137 1.37731 1.69493 0.89969 0.87468 0.86731 0.77203 0.86189 0.87130 0.85999 0.86636 0.74473 0.91533 0.90494 0.90842 0.89911 0.92431 0.91836 0.94738 0.95749 0.79477 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.43 71.24 0.74 0.23 16 2 C -0.04 -0.71 7.39 24.79 0.18 -0.53 16 3 C -0.07 -1.28 11.80 83.39 0.98 -0.30 16 4 N -0.49 -12.30 11.30 -303.83 -3.43 -15.74 16 5 C 0.17 3.90 7.97 88.34 0.70 4.60 16 6 C 0.16 2.72 6.56 71.24 0.47 3.18 16 7 O -0.39 -9.60 9.86 -129.94 -1.28 -10.88 16 8 C 0.05 0.82 6.42 71.24 0.46 1.28 16 9 C 0.51 13.64 7.90 87.66 0.69 14.34 16 10 O -0.58 -21.18 16.15 16.00 0.26 -20.92 16 11 N -0.71 -17.22 4.40 -438.91 -1.93 -19.16 16 12 C 0.16 4.18 3.23 45.76 0.15 4.33 16 13 H 0.07 2.28 7.57 -2.39 -0.02 2.26 16 14 C -0.12 -2.94 6.53 31.71 0.21 -2.73 16 15 C -0.11 -2.57 6.91 31.88 0.22 -2.34 16 16 C -0.11 -3.10 6.05 31.67 0.19 -2.91 16 17 C -0.10 -3.02 2.97 -10.07 -0.03 -3.05 16 18 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 19 C 0.16 5.58 4.18 86.38 0.36 5.94 16 20 N -0.74 -35.38 5.44 -343.46 -1.87 -37.24 16 21 C -0.24 -12.65 9.99 84.03 0.84 -11.81 16 22 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 23 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 24 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 25 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 O -0.21 -4.89 10.77 -3.63 -0.04 -4.93 16 30 H 0.08 0.60 8.14 -2.38 -0.02 0.59 16 31 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.12 1.44 8.14 -2.38 -0.02 1.43 16 38 H 0.42 8.69 5.89 -92.71 -0.55 8.15 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 1.70 8.06 -2.39 -0.02 1.69 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 1.92 7.77 -2.39 -0.02 1.90 16 45 H 0.03 1.14 7.08 -2.38 -0.02 1.12 16 46 H 0.02 0.87 7.46 -2.39 -0.02 0.85 16 47 H 0.37 19.36 7.53 -92.71 -0.70 18.66 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -80.20 398.95 0.39 -79.81 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: -0.26 Total: 33.93 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 6.64 Total: 6.32 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -6.95 Total: -130.01 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.06 Total: -36.73 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -80.20 0.39 -79.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320151478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.387 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds