Wall clock time and date at job start Tue Mar 31 2020 20:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 110.53901 * 2 1 4 4 C 1.53000 * 109.46886 * 62.16376 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.62757 * 359.71777 * 8 6 5 10 10 C 1.53632 * 108.54013 * 126.36982 * 9 8 6 11 11 C 1.53036 * 109.24130 * 54.85647 * 10 9 8 12 12 C 1.50702 * 109.44891 * 178.49813 * 11 10 9 13 13 H 1.08001 * 120.00168 * 120.06300 * 12 11 10 14 14 C 1.37875 * 119.99990 * 300.06109 * 12 11 10 15 15 N 1.31510 * 120.00430 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00005 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.46951 * 90.00019 * 16 14 12 18 18 H 1.48494 * 109.47440 * 209.99884 * 16 14 12 19 19 H 1.48500 * 109.47228 * 330.00530 * 16 14 12 20 20 C 1.53041 * 109.53994 * 298.51106 * 11 10 9 21 21 C 1.46923 * 120.63207 * 180.02562 * 8 6 5 22 22 N 1.47317 * 110.72785 * 122.91675 * 2 1 3 23 23 C 1.34527 * 106.61858 * 118.58883 * 22 2 1 24 24 O 1.21535 * 123.77413 * 180.02562 * 23 22 2 25 25 N 1.33801 * 112.45886 * 0.02562 * 23 22 2 26 26 C 1.34767 * 111.64348 * 359.97438 * 25 23 22 27 27 O 1.21228 * 127.15873 * 179.97438 * 26 25 23 28 28 H 1.09004 * 109.46778 * 60.00484 * 1 2 3 29 29 H 1.09008 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47384 * 300.00246 * 1 2 3 31 31 H 1.09001 * 109.46652 * 302.16722 * 3 2 1 32 32 H 1.08992 * 109.47514 * 182.16811 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 34 34 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 35 35 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 36 36 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 37 37 H 1.09001 * 109.59036 * 246.19971 * 9 8 6 38 38 H 1.09001 * 109.58801 * 6.63134 * 9 8 6 39 39 H 1.08998 * 109.63452 * 294.86846 * 10 9 8 40 40 H 1.09002 * 109.43099 * 174.72563 * 10 9 8 41 41 H 1.09007 * 109.46249 * 58.52993 * 11 10 9 42 42 H 0.96996 * 120.00559 * 180.02562 * 15 14 12 43 43 H 1.08994 * 109.49924 * 301.41288 * 20 11 10 44 44 H 1.09001 * 109.50257 * 181.31486 * 20 11 10 45 45 H 1.08998 * 109.58421 * 353.36666 * 21 8 6 46 46 H 1.09001 * 109.58806 * 113.80165 * 21 8 6 47 47 H 0.96999 * 126.69045 * 298.57266 * 22 2 1 48 48 H 0.96996 * 124.17405 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 1.6149 2.1466 1.2756 5 6 2.1511 3.5795 1.2753 6 6 1.7066 4.2825 2.5320 7 8 1.0282 3.6951 3.3478 8 7 2.0630 5.5640 2.7494 9 6 2.8898 6.2869 1.7733 10 6 2.1733 7.5932 1.3985 11 6 1.8687 8.3847 2.6724 12 6 1.1987 9.6843 2.3074 13 1 0.2095 9.9053 2.6804 14 6 1.8486 10.5913 1.4974 15 7 1.2642 11.7257 1.1793 16 14 3.5598 10.2095 0.8530 17 1 3.4522 9.5011 -0.4478 18 1 4.3124 11.4758 0.6662 19 1 4.2751 9.3477 1.8281 20 6 0.9396 7.5675 3.5730 21 6 1.6379 6.2625 3.9700 22 7 2.0513 -0.7487 1.1566 23 6 2.7644 -1.7758 0.6603 24 8 3.3355 -2.5976 1.3500 25 7 2.7747 -1.7917 -0.6776 26 6 2.0636 -0.7692 -1.1923 27 8 1.8879 -0.5165 -2.3648 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6818 1.9649 -0.8699 32 1 3.1558 1.4128 -0.0389 33 1 0.5257 2.1666 1.3145 34 1 1.9998 1.6145 2.1455 35 1 3.2402 3.5599 1.2363 36 1 1.7660 4.1115 0.4054 37 1 3.8611 6.5130 2.2134 38 1 3.0238 5.6734 0.8824 39 1 1.2417 7.3644 0.8809 40 1 2.8161 8.1853 0.7472 41 1 2.7985 8.5917 3.2024 42 1 1.7212 12.3636 0.6092 43 1 0.0197 7.3390 3.0349 44 1 0.7043 8.1413 4.4694 45 1 0.9455 5.6329 4.5289 46 1 2.5093 6.4867 4.5852 47 1 1.9085 -0.5414 2.0934 48 1 3.2364 -2.4574 -1.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323654422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:17 Heat of formation + Delta-G solvation = -120.125884 kcal Electronic energy + Delta-G solvation = -29536.450730 eV Core-core repulsion = 25397.476468 eV Total energy + Delta-G solvation = -4138.974262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.54629 -41.13933 -39.78436 -38.66831 -37.95109 -36.26402 -35.28511 -34.23980 -33.35464 -32.21286 -31.50671 -28.79503 -27.83822 -26.12497 -24.53033 -24.14202 -23.92208 -22.70768 -21.50028 -21.25064 -19.71766 -19.25418 -18.85039 -18.09864 -17.69698 -17.55278 -17.01792 -16.89099 -16.72636 -16.59896 -16.46812 -15.77761 -15.34091 -15.32006 -15.09079 -14.89637 -14.65799 -14.33664 -14.03457 -13.95643 -13.66608 -13.62833 -13.43114 -13.09278 -12.90181 -12.76728 -12.61911 -12.31036 -12.21926 -12.07779 -11.97782 -11.77184 -11.58997 -11.51472 -11.47555 -11.21505 -11.15294 -10.99730 -10.70860 -10.60398 -10.50785 -9.52427 -8.26265 -6.31612 0.50137 1.33490 1.41453 1.41772 1.52157 1.72210 1.92499 2.07457 2.15298 2.36840 2.88328 3.08964 3.43280 3.59537 3.68314 4.02552 4.12726 4.15695 4.21182 4.25432 4.27342 4.30989 4.48519 4.50292 4.59554 4.62800 4.70810 4.74630 4.78974 4.81664 4.87902 4.90326 4.98280 5.03854 5.08703 5.12171 5.16757 5.27773 5.39677 5.44268 5.62528 5.69612 5.76828 5.77969 5.86587 6.33407 6.35323 6.55199 6.75903 7.09408 7.25018 7.34093 8.90873 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.002278 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.506670 B =12287.104377 C =12881.538415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.126 3.874 3 C -0.109 4.109 4 C -0.097 4.097 5 C -0.138 4.138 6 C 0.508 3.492 7 O -0.586 6.586 8 N -0.609 5.609 9 C 0.107 3.893 10 C -0.134 4.134 11 C 0.013 3.987 12 C -0.522 4.522 13 H 0.024 0.976 14 C 0.004 3.996 15 N -0.956 5.956 16 Si 0.954 3.046 17 H -0.256 1.256 18 H -0.307 1.307 19 H -0.235 1.235 20 C -0.106 4.106 21 C 0.117 3.883 22 N -0.702 5.702 23 C 0.706 3.294 24 O -0.585 6.585 25 N -0.673 5.673 26 C 0.538 3.462 27 O -0.487 6.487 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.030 0.970 42 H 0.264 0.736 43 H 0.041 0.959 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.448 0.552 48 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -26.213 -4.537 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.036 3.964 3 C -0.147 4.147 4 C -0.135 4.135 5 C -0.177 4.177 6 C 0.299 3.701 7 O -0.467 6.467 8 N -0.341 5.341 9 C -0.015 4.015 10 C -0.172 4.172 11 C -0.006 4.006 12 C -0.560 4.560 13 H 0.042 0.958 14 C -0.193 4.193 15 N -0.596 5.596 16 Si 0.780 3.220 17 H -0.182 1.182 18 H -0.236 1.236 19 H -0.158 1.158 20 C -0.145 4.145 21 C -0.006 4.006 22 N -0.367 5.367 23 C 0.405 3.595 24 O -0.462 6.462 25 N -0.343 5.343 26 C 0.324 3.676 27 O -0.357 6.357 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.295 0.705 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 4.700 -26.589 -4.440 27.364 hybrid contribution 0.361 0.671 -0.076 0.766 sum 5.061 -25.918 -4.517 26.790 Atomic orbital electron populations 1.22093 0.88870 1.04118 1.05741 1.21555 0.98140 0.93910 0.82811 1.21814 1.02231 0.90322 1.00344 1.21285 1.02046 0.93123 0.97039 1.21776 1.04357 0.96604 0.95001 1.21372 0.78840 0.80982 0.88952 1.90642 1.40818 1.66184 1.49051 1.48267 1.52013 1.12065 1.21778 1.22070 0.93433 0.92971 0.93005 1.22302 1.00085 0.95895 0.98928 1.19100 0.95594 0.92469 0.93442 1.21399 1.02457 1.02223 1.29874 0.95771 1.26047 1.02590 0.94381 0.96250 1.70079 1.40564 1.10454 1.38510 0.85775 0.79130 0.76895 0.80233 1.18173 1.23554 1.15800 1.21700 0.98223 0.95089 0.99461 1.21565 0.99579 0.92721 0.86733 1.45741 1.53345 1.27675 1.09980 1.15924 0.79500 0.82245 0.81792 1.91049 1.50331 1.43096 1.61710 1.44275 1.50945 1.30800 1.08321 1.20924 0.76552 0.80348 0.89788 1.90848 1.57551 1.69513 1.17751 0.89039 0.91322 0.88810 0.87816 0.89831 0.90624 0.91287 0.86479 0.86860 0.90258 0.86430 0.92523 0.93000 0.95207 0.92702 0.93992 0.92141 0.90071 0.90680 0.70509 0.71744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.68 71.98 0.62 -0.53 16 2 C 0.13 1.17 1.01 2.98 0.00 1.17 16 3 C -0.11 -0.88 4.56 30.59 0.14 -0.74 16 4 C -0.10 -1.09 4.07 30.59 0.12 -0.96 16 5 C -0.14 -1.89 4.05 29.85 0.12 -1.77 16 6 C 0.51 12.32 7.70 87.66 0.67 12.99 16 7 O -0.59 -18.02 15.39 -3.04 -0.05 -18.07 16 8 N -0.61 -16.16 2.97 -817.97 -2.43 -18.58 16 9 C 0.11 2.59 6.37 86.51 0.55 3.15 16 10 C -0.13 -4.67 4.86 30.82 0.15 -4.52 16 11 C 0.01 0.54 1.65 -11.51 -0.02 0.52 16 12 C -0.52 -28.54 9.14 25.60 0.23 -28.31 16 13 H 0.02 1.50 7.99 -2.91 -0.02 1.47 16 14 C 0.00 0.20 5.45 84.65 0.46 0.66 16 15 N -0.96 -58.65 13.96 21.45 0.30 -58.35 16 16 Si 0.95 41.22 24.38 68.60 1.67 42.89 16 17 H -0.26 -10.12 6.86 99.48 0.68 -9.44 16 18 H -0.31 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.23 -8.91 6.53 99.48 0.65 -8.27 16 20 C -0.11 -3.94 5.30 30.69 0.16 -3.78 16 21 C 0.12 3.50 6.43 86.38 0.56 4.05 16 22 N -0.70 -7.27 5.52 -439.80 -2.43 -9.69 16 23 C 0.71 10.76 8.99 179.44 1.61 12.37 16 24 O -0.59 -13.70 18.04 -3.83 -0.07 -13.77 16 25 N -0.67 -7.80 5.70 -441.11 -2.52 -10.32 16 26 C 0.54 6.82 7.48 87.94 0.66 7.48 16 27 O -0.49 -8.81 18.02 -2.87 -0.05 -8.86 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.09 0.65 6.59 -2.39 -0.02 0.63 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.96 6.53 -2.39 -0.02 0.94 16 34 H 0.07 0.84 7.14 -2.39 -0.02 0.83 16 35 H 0.12 1.10 7.93 -2.39 -0.02 1.08 16 36 H 0.11 1.27 7.70 -2.39 -0.02 1.26 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.12 1.90 5.93 -2.39 -0.01 1.88 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.88 3.24 -2.39 -0.01 1.87 16 41 H 0.03 1.25 7.20 -2.38 -0.02 1.23 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 2.49 7.00 -2.39 -0.02 2.47 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.45 3.81 8.24 -92.71 -0.76 3.05 16 48 H 0.44 3.65 8.96 -92.71 -0.83 2.82 16 Total: -1.00 -77.40 376.26 -0.18 -77.58 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.67 Total: 15.39 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 6.05 Total: 1.78 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -7.07 Total: -96.95 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.17 Total: -40.70 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.67 Total: 42.89 kcal Total: -77.40 -0.18 -77.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323654422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.546 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds