Wall clock time and date at job start Tue Mar 31 2020 21:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 109.47062 * 2 1 4 4 O 1.33647 * 125.80337 * 269.97852 * 3 2 1 5 5 C 1.34221 * 110.90928 * 179.97438 * 4 3 2 6 6 C 1.34179 * 109.12156 * 0.02562 * 5 4 3 7 7 C 1.36422 * 125.79802 * 90.26564 * 3 2 1 8 8 C 1.47375 * 127.19279 * 0.02562 * 7 3 2 9 9 O 1.21614 * 120.00399 * 0.14788 * 8 7 3 10 10 N 1.34781 * 119.99846 * 180.15399 * 8 7 3 11 11 C 1.46498 * 119.99839 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46845 * 179.97438 * 11 10 8 13 13 C 1.53010 * 109.46997 * 179.97438 * 12 11 10 14 14 H 1.08995 * 109.46853 * 305.00347 * 13 12 11 15 15 C 1.53002 * 109.47109 * 185.00184 * 13 12 11 16 16 N 1.46902 * 109.46798 * 65.00004 * 13 12 11 17 17 C 1.46893 * 110.99677 * 204.99767 * 16 13 12 18 18 C 1.50700 * 109.46956 * 180.02562 * 17 16 13 19 19 O 1.21296 * 120.00222 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00190 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00227 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99777 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00099 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00126 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99994 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46980 * 60.00216 * 25 23 21 27 27 H 1.48503 * 109.47079 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47191 * 300.00039 * 25 23 21 29 29 H 1.09006 * 109.47042 * 299.99214 * 1 2 3 30 30 H 1.08998 * 109.47621 * 59.99843 * 1 2 3 31 31 H 1.09003 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47042 * 240.00786 * 2 1 3 33 33 H 1.08996 * 109.47500 * 120.00691 * 2 1 3 34 34 H 1.08003 * 125.43746 * 179.97438 * 5 4 3 35 35 H 1.08002 * 127.01820 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00115 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.46971 * 299.99971 * 11 10 8 38 38 H 1.09002 * 109.47081 * 59.99825 * 11 10 8 39 39 H 1.08995 * 109.47639 * 299.99963 * 12 11 10 40 40 H 1.09002 * 109.47097 * 60.00235 * 12 11 10 41 41 H 1.08994 * 109.46846 * 60.00131 * 15 13 12 42 42 H 1.08993 * 109.46994 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.46615 * 300.00015 * 15 13 12 44 44 H 1.00908 * 110.99687 * 81.04729 * 16 13 12 45 45 H 1.08995 * 109.47706 * 300.00066 * 17 16 13 46 46 H 1.09003 * 109.47289 * 60.00517 * 17 16 13 47 47 H 0.96998 * 120.00004 * 0.02562 * 20 18 17 48 48 H 0.96995 * 119.99955 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2932 2.1578 -1.0839 5 6 2.7249 3.3810 -0.7389 6 6 2.7576 3.4744 0.5992 7 6 2.3030 2.1715 1.1065 8 6 2.1660 1.7627 2.5157 9 8 1.7752 0.6439 2.7892 10 7 2.4736 2.6287 3.5016 11 6 2.3369 2.2225 4.9025 12 6 2.7478 3.3821 5.8121 13 6 2.6043 2.9581 7.2752 14 1 1.5887 2.6049 7.4532 15 6 2.8949 4.1544 8.1837 16 7 3.5566 1.8784 7.5677 17 6 3.0913 1.0567 8.6929 18 6 4.0917 -0.0374 8.9634 19 8 5.0940 -0.1238 8.2857 20 7 3.8733 -0.9193 9.9589 21 6 4.7837 -1.9143 10.2053 22 1 5.6761 -1.9912 9.6019 23 6 4.5582 -2.8238 11.2312 24 7 3.4725 -2.7300 11.9658 25 14 5.7983 -4.1800 11.5664 26 1 7.1125 -3.5766 11.9043 27 1 5.3282 -5.0104 12.7043 28 1 5.9403 -5.0307 10.3577 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0025 4.1646 -1.4284 35 1 3.0601 4.3304 1.1841 36 1 2.7856 3.5209 3.2836 37 1 1.3000 1.9528 5.1030 38 1 2.9797 1.3638 5.0962 39 1 3.7847 3.6515 5.6115 40 1 2.1053 4.2411 5.6185 41 1 2.1883 4.9555 7.9666 42 1 2.7931 3.8523 9.2260 43 1 3.9106 4.5076 8.0056 44 1 4.4784 2.2479 7.7466 45 1 2.9874 1.6810 9.5803 46 1 2.1265 0.6141 8.4451 47 1 3.0720 -0.8500 10.5010 48 1 3.3154 -3.3646 12.6822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328331089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:41 Heat of formation + Delta-G solvation = -74.727226 kcal Electronic energy + Delta-G solvation = -28258.634612 eV Core-core repulsion = 24121.628984 eV Total energy + Delta-G solvation = -4137.005628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.85631 -39.45410 -38.42886 -37.06632 -34.93328 -34.14805 -33.85762 -33.05969 -31.48223 -31.03644 -29.29885 -28.63589 -26.29805 -24.82913 -23.94101 -23.37034 -22.58418 -21.06802 -20.82360 -19.81911 -19.18983 -18.10471 -17.84045 -16.56382 -16.13745 -16.00251 -15.89132 -15.61434 -15.18933 -14.88894 -14.62119 -14.56220 -14.48756 -13.94862 -13.76421 -13.67673 -13.29645 -13.23522 -13.05397 -12.92410 -12.68135 -12.53422 -12.14580 -11.89842 -11.80652 -11.54226 -11.50185 -11.29453 -11.25507 -11.16833 -10.98564 -10.85333 -10.41288 -10.17744 -10.09652 -9.96567 -9.46266 -9.09033 -8.81356 -8.42561 -8.00554 -7.91649 -6.37993 -3.78654 1.16184 1.75991 2.51005 3.18638 3.23144 3.28344 3.29960 3.33115 3.95250 4.12333 4.18052 4.35590 4.55526 4.57901 4.73717 4.84722 4.99804 5.01933 5.10790 5.13453 5.20712 5.23554 5.29864 5.33145 5.35372 5.46411 5.57303 5.63647 5.70241 5.70718 5.79304 5.84310 5.86475 5.96524 6.00680 6.03341 6.11045 6.12599 6.29854 6.32890 6.46163 6.74620 7.25616 7.48282 7.58647 7.69684 8.10069 8.21912 8.65341 9.21689 9.58412 10.10099 10.79751 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.002043 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.866200 B =13701.528985 C =15133.025782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C 0.081 3.919 4 O -0.176 6.176 5 C -0.041 4.041 6 C -0.189 4.189 7 C -0.243 4.243 8 C 0.585 3.415 9 O -0.535 6.535 10 N -0.723 5.723 11 C 0.123 3.877 12 C -0.115 4.115 13 C 0.085 3.915 14 H 0.080 0.920 15 C -0.183 4.183 16 N -0.662 5.662 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.207 0.793 35 H 0.156 0.844 36 H 0.396 0.604 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 16.809 -20.979 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C 0.028 3.972 4 O -0.072 6.072 5 C -0.107 4.107 6 C -0.209 4.209 7 C -0.247 4.247 8 C 0.373 3.627 9 O -0.414 6.414 10 N -0.374 5.374 11 C 0.001 3.999 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.098 0.902 15 C -0.242 4.242 16 N -0.295 5.295 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.223 0.777 35 H 0.173 0.827 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.845 15.287 -21.807 27.497 hybrid contribution 0.520 0.797 1.441 1.727 sum -6.325 16.084 -20.366 26.711 Atomic orbital electron populations 1.21682 0.93287 1.02792 1.02242 1.20435 0.97037 0.86321 1.05335 1.22913 0.96791 0.94416 0.83045 1.83772 1.65241 1.23118 1.35098 1.23845 1.04245 0.86181 0.96388 1.22858 1.05705 0.97744 0.94571 1.21221 1.13668 0.95757 0.94084 1.17170 0.77331 0.84561 0.83636 1.90795 1.46657 1.19991 1.83929 1.45832 1.68312 1.16580 1.06691 1.21399 1.02036 0.98709 0.77780 1.21748 1.02071 0.97113 0.94422 1.21504 0.97413 0.90303 0.93418 0.90193 1.22513 1.02046 0.99088 1.00517 1.60204 1.05299 1.22127 1.41836 1.21697 0.98998 0.95090 0.92421 1.19832 0.88574 0.85266 0.83685 1.90525 1.30163 1.75534 1.50496 1.41859 1.22490 1.26401 1.29359 1.19649 1.02940 1.05408 1.14817 0.88011 1.25258 0.97482 0.99075 0.96174 1.69606 1.25952 1.38025 1.20825 0.85918 0.80114 0.80293 0.77895 1.19963 1.21006 1.19867 0.91849 0.92767 0.91212 0.90008 0.86533 0.77657 0.82650 0.77053 0.91918 0.89169 0.91154 0.91566 0.92243 0.92335 0.92325 0.83043 0.93891 0.89600 0.77481 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.89 37.15 0.37 -0.89 16 2 C -0.05 -0.53 5.95 -27.89 -0.17 -0.70 16 3 C 0.08 0.88 6.63 -34.96 -0.23 0.65 16 4 O -0.18 -1.69 10.52 7.65 0.08 -1.61 16 5 C -0.04 -0.29 12.03 29.30 0.35 0.06 16 6 C -0.19 -1.53 10.60 -37.45 -0.40 -1.92 16 7 C -0.24 -2.75 6.31 -103.28 -0.65 -3.40 16 8 C 0.59 7.90 7.81 -12.54 -0.10 7.80 16 9 O -0.54 -9.03 14.84 5.27 0.08 -8.96 16 10 N -0.72 -8.02 5.55 -61.40 -0.34 -8.37 16 11 C 0.12 1.53 5.56 -4.04 -0.02 1.51 16 12 C -0.12 -1.12 5.01 -26.73 -0.13 -1.26 16 13 C 0.08 0.96 2.59 -67.71 -0.18 0.79 16 14 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 15 C -0.18 -1.78 9.16 37.16 0.34 -1.44 16 16 N -0.66 -10.31 5.33 -107.99 -0.58 -10.89 16 17 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 18 C 0.44 10.55 7.82 -10.98 -0.09 10.46 16 19 O -0.58 -16.05 15.78 5.54 0.09 -15.97 16 20 N -0.56 -14.55 5.29 -10.96 -0.06 -14.60 16 21 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 25 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.12 1.37 6.47 -51.93 -0.34 1.04 16 34 H 0.21 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.16 0.82 7.74 -52.49 -0.41 0.41 16 36 H 0.40 3.18 7.64 -40.82 -0.31 2.87 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.45 7.75 -51.93 -0.40 1.05 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 43 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 44 H 0.35 5.67 8.17 -39.29 -0.32 5.35 16 45 H 0.04 0.68 7.43 -51.93 -0.39 0.29 16 46 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -34.71 404.94 -7.53 -42.24 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -7.43 Total: 15.42 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.17 Total: 4.38 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.25 Total: -58.03 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: 0.25 Total: -26.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.71 -7.53 -42.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328331089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.485 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds