Wall clock time and date at job start Tue Mar 31 2020 21:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 109.47062 * 2 1 4 4 O 1.33647 * 125.80337 * 269.97852 * 3 2 1 5 5 C 1.34221 * 110.90928 * 179.97438 * 4 3 2 6 6 C 1.34179 * 109.12156 * 0.02562 * 5 4 3 7 7 C 1.36422 * 125.79802 * 90.26564 * 3 2 1 8 8 C 1.47375 * 127.19279 * 0.02562 * 7 3 2 9 9 O 1.21614 * 120.00399 * 0.14788 * 8 7 3 10 10 N 1.34781 * 119.99846 * 180.15399 * 8 7 3 11 11 C 1.46498 * 119.99839 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46845 * 179.97438 * 11 10 8 13 13 C 1.53010 * 109.46997 * 179.97438 * 12 11 10 14 14 H 1.08995 * 109.46853 * 305.00347 * 13 12 11 15 15 C 1.53002 * 109.47109 * 185.00184 * 13 12 11 16 16 N 1.46902 * 109.46798 * 65.00004 * 13 12 11 17 17 C 1.46893 * 110.99677 * 204.99767 * 16 13 12 18 18 C 1.50700 * 109.46956 * 180.02562 * 17 16 13 19 19 O 1.21296 * 120.00222 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00190 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00227 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99777 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00099 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00126 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99994 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46980 * 60.00216 * 25 23 21 27 27 H 1.48503 * 109.47079 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47191 * 300.00039 * 25 23 21 29 29 H 1.09006 * 109.47042 * 299.99214 * 1 2 3 30 30 H 1.08998 * 109.47621 * 59.99843 * 1 2 3 31 31 H 1.09003 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47042 * 240.00786 * 2 1 3 33 33 H 1.08996 * 109.47500 * 120.00691 * 2 1 3 34 34 H 1.08003 * 125.43746 * 179.97438 * 5 4 3 35 35 H 1.08002 * 127.01820 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00115 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.46971 * 299.99971 * 11 10 8 38 38 H 1.09002 * 109.47081 * 59.99825 * 11 10 8 39 39 H 1.08995 * 109.47639 * 299.99963 * 12 11 10 40 40 H 1.09002 * 109.47097 * 60.00235 * 12 11 10 41 41 H 1.08994 * 109.46846 * 60.00131 * 15 13 12 42 42 H 1.08993 * 109.46994 * 180.02562 * 15 13 12 43 43 H 1.09003 * 109.46615 * 300.00015 * 15 13 12 44 44 H 1.00908 * 110.99687 * 81.04729 * 16 13 12 45 45 H 1.08995 * 109.47706 * 300.00066 * 17 16 13 46 46 H 1.09003 * 109.47289 * 60.00517 * 17 16 13 47 47 H 0.96998 * 120.00004 * 0.02562 * 20 18 17 48 48 H 0.96995 * 119.99955 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2932 2.1578 -1.0839 5 6 2.7249 3.3810 -0.7389 6 6 2.7576 3.4744 0.5992 7 6 2.3030 2.1715 1.1065 8 6 2.1660 1.7627 2.5157 9 8 1.7752 0.6439 2.7892 10 7 2.4736 2.6287 3.5016 11 6 2.3369 2.2225 4.9025 12 6 2.7478 3.3821 5.8121 13 6 2.6043 2.9581 7.2752 14 1 1.5887 2.6049 7.4532 15 6 2.8949 4.1544 8.1837 16 7 3.5566 1.8784 7.5677 17 6 3.0913 1.0567 8.6929 18 6 4.0917 -0.0374 8.9634 19 8 5.0940 -0.1238 8.2857 20 7 3.8733 -0.9193 9.9589 21 6 4.7837 -1.9143 10.2053 22 1 5.6761 -1.9912 9.6019 23 6 4.5582 -2.8238 11.2312 24 7 3.4725 -2.7300 11.9658 25 14 5.7983 -4.1800 11.5664 26 1 7.1125 -3.5766 11.9043 27 1 5.3282 -5.0104 12.7043 28 1 5.9403 -5.0307 10.3577 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0025 4.1646 -1.4284 35 1 3.0601 4.3304 1.1841 36 1 2.7856 3.5209 3.2836 37 1 1.3000 1.9528 5.1030 38 1 2.9797 1.3638 5.0962 39 1 3.7847 3.6515 5.6115 40 1 2.1053 4.2411 5.6185 41 1 2.1883 4.9555 7.9666 42 1 2.7931 3.8523 9.2260 43 1 3.9106 4.5076 8.0056 44 1 4.4784 2.2479 7.7466 45 1 2.9874 1.6810 9.5803 46 1 2.1265 0.6141 8.4451 47 1 3.0720 -0.8500 10.5010 48 1 3.3154 -3.3646 12.6822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328331089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:40 Heat of formation + Delta-G solvation = -101.096398 kcal Electronic energy + Delta-G solvation = -28259.778065 eV Core-core repulsion = 24121.628984 eV Total energy + Delta-G solvation = -4138.149081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.55375 -40.50776 -40.17817 -38.30697 -36.11796 -35.78745 -34.95168 -33.82542 -33.30241 -32.44626 -30.11343 -29.44840 -27.95580 -25.95262 -25.41489 -24.19238 -23.42362 -21.98038 -21.67661 -21.13842 -20.61791 -19.91743 -18.84971 -17.74428 -17.29641 -16.99841 -16.90728 -16.69665 -16.63011 -16.34245 -15.93742 -15.62361 -15.54430 -15.33217 -15.20292 -14.64195 -14.46483 -14.22621 -14.07201 -13.89754 -13.59680 -13.54168 -13.48200 -13.27708 -13.09463 -12.84501 -12.66517 -12.53146 -12.44588 -12.22230 -12.18849 -12.10462 -11.98019 -11.73456 -11.50903 -11.03626 -10.83730 -10.34966 -10.08351 -10.02223 -9.54152 -9.23798 -8.47188 -5.96060 0.32494 1.14700 1.38840 1.40343 1.51559 1.82230 2.05183 2.28301 2.29102 2.34423 2.95338 3.19919 3.55595 3.55960 3.78167 3.87163 3.89121 4.13007 4.14163 4.23288 4.27835 4.34378 4.43138 4.46202 4.49857 4.54258 4.61412 4.62316 4.73374 4.76934 4.91113 4.93510 5.00023 5.03432 5.08741 5.20000 5.23485 5.27429 5.32784 5.39772 5.39925 5.50743 5.91875 6.04976 6.14971 6.47449 6.58954 6.59795 7.11884 7.25644 7.55763 8.11389 8.70039 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.002043 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.866200 B =13701.528985 C =15133.025782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C 0.067 3.933 4 O -0.182 6.182 5 C -0.030 4.030 6 C -0.196 4.196 7 C -0.267 4.267 8 C 0.577 3.423 9 O -0.581 6.581 10 N -0.709 5.709 11 C 0.130 3.870 12 C -0.102 4.102 13 C 0.083 3.917 14 H 0.083 0.917 15 C -0.175 4.175 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.269 1.269 28 H -0.274 1.274 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.251 0.749 35 H 0.185 0.815 36 H 0.413 0.587 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.345 0.655 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 19.201 -21.877 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C 0.014 3.986 4 O -0.077 6.077 5 C -0.095 4.095 6 C -0.214 4.214 7 C -0.272 4.272 8 C 0.366 3.634 9 O -0.463 6.463 10 N -0.360 5.360 11 C 0.006 3.994 12 C -0.140 4.140 13 C -0.027 4.027 14 H 0.101 0.899 15 C -0.234 4.234 16 N -0.311 5.311 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.193 1.193 28 H -0.199 1.199 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.267 0.733 35 H 0.202 0.798 36 H 0.250 0.750 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.164 0.836 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.155 17.743 -22.701 29.687 hybrid contribution 0.605 0.117 1.646 1.757 sum -6.550 17.860 -21.055 28.376 Atomic orbital electron populations 1.21634 0.92642 1.03345 1.01761 1.20392 0.97612 0.86378 1.04914 1.23023 0.97231 0.94867 0.83506 1.83785 1.65271 1.24097 1.34588 1.24760 1.02041 0.85694 0.96998 1.23183 1.05878 0.97129 0.95254 1.21282 1.15113 0.97899 0.92873 1.17635 0.76651 0.84167 0.84983 1.90765 1.48839 1.21962 1.84775 1.45687 1.67428 1.17079 1.05828 1.21214 1.00478 0.98640 0.79056 1.21690 1.03084 0.96786 0.92473 1.21637 0.96399 0.89845 0.94769 0.89874 1.22425 1.02915 0.98716 0.99349 1.60205 1.05991 1.23977 1.40914 1.21526 0.97053 0.93635 0.94351 1.20966 0.88943 0.85632 0.82057 1.90489 1.32302 1.76676 1.51569 1.41941 1.22375 1.26645 1.30194 1.19620 1.03370 1.07518 1.15921 0.90461 1.26055 0.99270 1.00685 0.95363 1.69667 1.26856 1.38688 1.20890 0.84988 0.77914 0.77450 0.77978 1.19540 1.19331 1.19925 0.94018 0.91347 0.90200 0.88076 0.89211 0.73295 0.79816 0.74973 0.92857 0.93508 0.90681 0.88057 0.89757 0.93164 0.92097 0.83638 0.91419 0.88385 0.76993 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.89 71.98 0.71 -1.78 16 2 C -0.06 -1.15 5.95 29.85 0.18 -0.97 16 3 C 0.07 1.46 6.63 25.26 0.17 1.62 16 4 O -0.18 -3.19 10.52 4.45 0.05 -3.14 16 5 C -0.03 -0.34 12.03 66.89 0.80 0.47 16 6 C -0.20 -2.70 10.60 23.65 0.25 -2.44 16 7 C -0.27 -6.02 6.31 -18.99 -0.12 -6.14 16 8 C 0.58 16.13 7.81 86.65 0.68 16.81 16 9 O -0.58 -21.13 14.84 -4.07 -0.06 -21.19 16 10 N -0.71 -15.53 5.55 -466.42 -2.59 -18.12 16 11 C 0.13 3.23 5.56 86.38 0.48 3.71 16 12 C -0.10 -1.79 5.01 30.60 0.15 -1.63 16 13 C 0.08 1.75 2.59 44.92 0.12 1.87 16 14 H 0.08 1.71 7.80 -2.39 -0.02 1.70 16 15 C -0.18 -2.92 9.16 71.98 0.66 -2.26 16 16 N -0.68 -20.99 5.33 -495.58 -2.64 -23.63 16 17 C 0.07 2.33 5.96 85.56 0.51 2.84 16 18 C 0.44 21.45 7.82 87.66 0.69 22.13 16 19 O -0.62 -35.70 15.78 -3.08 -0.05 -35.75 16 20 N -0.57 -30.43 5.29 -306.98 -1.62 -32.05 16 21 C -0.33 -19.58 9.68 84.04 0.81 -18.77 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 24 N -0.92 -50.74 13.05 21.66 0.28 -50.46 16 25 Si 0.99 44.07 29.55 68.60 2.03 46.09 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 29 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.09 2.34 6.47 -2.39 -0.02 2.32 16 34 H 0.25 0.29 8.06 -2.91 -0.02 0.27 16 35 H 0.18 1.28 7.74 -2.91 -0.02 1.26 16 36 H 0.41 5.89 7.64 -92.71 -0.71 5.18 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.59 7.75 -2.39 -0.02 1.57 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 0.93 7.45 -2.39 -0.02 0.92 16 43 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 44 H 0.34 11.18 8.17 -89.69 -0.73 10.45 16 45 H 0.07 2.05 7.43 -2.39 -0.02 2.03 16 46 H 0.10 3.20 8.06 -2.39 -0.02 3.18 16 47 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 48 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -79.90 404.94 0.78 -79.12 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: -1.17 Total: 43.96 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 6.56 Total: 15.16 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -6.57 Total: -124.25 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -0.06 Total: -60.08 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -79.90 0.78 -79.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328331089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.973 kcal (2) G-P(sol) polarization free energy of solvation -79.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds