Wall clock time and date at job start Tue Mar 31 2020 19:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34338 * 126.44579 * 2 1 4 4 N 1.34480 * 107.66583 * 179.72376 * 3 2 1 5 5 C 1.30251 * 108.70230 * 0.42570 * 4 3 2 6 6 C 1.50700 * 125.61735 * 179.83708 * 5 4 3 7 7 O 1.42904 * 109.47237 * 89.68997 * 6 5 4 8 8 C 1.42900 * 114.00024 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46890 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00154 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00091 * 180.02562 * 9 8 7 12 12 C 1.46930 * 120.62478 * 354.16681 * 11 9 8 13 13 C 1.53627 * 108.54309 * 126.37320 * 12 11 9 14 14 C 1.53040 * 109.24137 * 54.85185 * 13 12 11 15 15 C 1.53039 * 109.54040 * 298.51280 * 14 13 12 16 16 C 1.46919 * 120.63368 * 174.44801 * 11 9 8 17 17 H 1.09004 * 109.58731 * 113.79674 * 16 11 9 18 18 C 1.52997 * 109.58916 * 353.51491 * 16 11 9 19 19 N 1.46494 * 109.47492 * 181.58833 * 18 16 11 20 20 C 1.36938 * 120.00123 * 184.95037 * 19 18 16 21 21 H 1.08005 * 120.00021 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00151 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99524 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47358 * 60.00157 * 24 22 20 26 26 H 1.48499 * 109.47210 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47385 * 299.99760 * 24 22 20 28 28 O 1.33966 * 108.76367 * 359.57428 * 5 4 3 29 29 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47362 * 300.00232 * 1 2 3 31 31 H 1.08998 * 109.47232 * 59.99781 * 1 2 3 32 32 H 1.07996 * 126.16387 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46925 * 329.69379 * 6 5 4 34 34 H 1.08997 * 109.47159 * 209.69083 * 6 5 4 35 35 H 1.08991 * 109.47535 * 300.00313 * 8 7 6 36 36 H 1.09004 * 109.46923 * 60.00549 * 8 7 6 37 37 H 1.09006 * 109.58514 * 246.20367 * 12 11 9 38 38 H 1.08993 * 109.58962 * 6.62915 * 12 11 9 39 39 H 1.09000 * 109.63124 * 294.86415 * 13 12 11 40 40 H 1.08991 * 109.45761 * 174.73752 * 13 12 11 41 41 H 1.08994 * 109.46049 * 178.49308 * 14 13 12 42 42 H 1.08998 * 109.45021 * 58.52360 * 14 13 12 43 43 H 1.08997 * 109.50085 * 301.41534 * 15 14 13 44 44 H 1.08997 * 109.52563 * 181.33425 * 15 14 13 45 45 H 1.09003 * 109.46846 * 301.59280 * 18 16 11 46 46 H 1.09001 * 109.47261 * 61.58639 * 18 16 11 47 47 H 0.96996 * 120.00215 * 4.94970 * 19 18 16 48 48 H 0.97005 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5764 -0.6548 0.0007 6 6 4.8003 -1.5341 0.0013 7 8 5.1869 -1.8117 1.3487 8 6 6.3434 -2.6433 1.4620 9 6 6.6582 -2.8701 2.9182 10 8 5.9606 -2.3694 3.7746 11 7 7.7151 -3.6295 3.2688 12 6 8.4931 -4.3461 2.2490 13 6 9.9740 -3.9710 2.4113 14 6 10.4115 -4.2554 3.8500 15 6 9.5892 -3.3973 4.8142 16 6 8.1074 -3.7613 4.6785 17 1 7.9522 -4.7893 5.0064 18 6 7.2634 -2.8165 5.5364 19 7 7.6824 -2.9222 6.9361 20 6 6.9990 -2.2422 7.9086 21 1 6.1514 -1.6275 7.6436 22 6 7.3957 -2.3428 9.2351 23 7 8.4290 -3.0914 9.5579 24 14 6.4639 -1.4146 10.5615 25 1 5.0476 -1.8606 10.5759 26 1 7.0825 -1.6869 11.8838 27 1 6.5213 0.0423 10.2795 28 8 2.3074 -1.0840 0.0004 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.9822 2.1112 -0.0004 33 1 5.6149 -1.0233 -0.5124 34 1 4.5763 -2.4689 -0.5124 35 1 6.1511 -3.6011 0.9788 36 1 7.1901 -2.1559 0.9785 37 1 8.3687 -5.4207 2.3828 38 1 8.1482 -4.0570 1.2563 39 1 10.1097 -2.9119 2.1924 40 1 10.5764 -4.5647 1.7238 41 1 11.4689 -4.0157 3.9622 42 1 10.2522 -5.3097 4.0762 43 1 9.7285 -2.3436 4.5727 44 1 9.9172 -3.5825 5.8370 45 1 7.4021 -1.7917 5.1919 46 1 6.2116 -3.0894 5.4503 47 1 8.4438 -3.4739 7.1741 48 1 8.7059 -3.1620 10.4849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328631840.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:57 Heat of formation + Delta-G solvation = -21.078587 kcal Electronic energy + Delta-G solvation = -29307.999709 eV Core-core repulsion = 25173.320460 eV Total energy + Delta-G solvation = -4134.679249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.57980 -40.42121 -38.30255 -36.95949 -34.98584 -34.70608 -33.07620 -32.81460 -32.00377 -29.99529 -29.63367 -27.82372 -25.90144 -25.35906 -24.35495 -23.04790 -22.58383 -21.37851 -21.08164 -20.89366 -19.03165 -17.75985 -17.37582 -16.99878 -16.66820 -16.54009 -16.39524 -15.50442 -15.15070 -14.93589 -14.53859 -14.39750 -14.26656 -14.06837 -13.77682 -13.49788 -13.43131 -13.28866 -13.20885 -12.91092 -12.73390 -12.67738 -12.25736 -12.19784 -11.96003 -11.56124 -11.49164 -11.00047 -10.92601 -10.80884 -10.78246 -10.64686 -10.52184 -10.33699 -10.14538 -9.95091 -9.59149 -9.02214 -8.84259 -8.64207 -8.34535 -6.71721 -5.61908 -2.87902 1.03997 2.13492 2.40909 2.74190 2.84602 3.52885 3.56015 3.58389 3.61749 3.98649 4.39893 4.49657 4.61885 4.65143 4.70229 4.75721 4.77358 4.81731 4.84237 4.95306 4.99283 5.01807 5.09146 5.22320 5.23330 5.35185 5.37748 5.55846 5.60007 5.72330 5.76177 5.79981 5.82827 5.97922 6.00953 6.01092 6.23645 6.25931 6.30435 6.55736 6.58638 6.81151 7.15062 7.33119 7.45778 7.55178 7.89493 8.39191 8.60084 9.68934 10.27800 10.63105 11.61765 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008844 B = 0.002895 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.392333 B = 9668.456715 C =12452.220814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.187 3.813 6 C 0.162 3.838 7 O -0.354 6.354 8 C 0.046 3.954 9 C 0.507 3.493 10 O -0.490 6.490 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.135 4.135 14 C -0.121 4.121 15 C -0.128 4.128 16 C 0.143 3.857 17 H 0.072 0.928 18 C 0.159 3.841 19 N -0.737 5.737 20 C -0.224 4.224 21 H 0.070 0.930 22 C -0.020 4.020 23 N -0.940 5.940 24 Si 0.907 3.093 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 O -0.194 6.194 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.186 0.814 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.379 0.621 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -1.263 -28.148 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.019 4.019 6 C 0.084 3.916 7 O -0.271 6.271 8 C -0.033 4.033 9 C 0.293 3.707 10 O -0.362 6.362 11 N -0.344 5.344 12 C -0.016 4.016 13 C -0.173 4.173 14 C -0.158 4.158 15 C -0.166 4.166 16 C 0.040 3.960 17 H 0.090 0.910 18 C 0.032 3.968 19 N -0.383 5.383 20 C -0.356 4.356 21 H 0.088 0.912 22 C -0.215 4.215 23 N -0.590 5.590 24 Si 0.738 3.262 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 O -0.081 6.081 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.212 0.788 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.447 -0.502 -27.430 27.970 hybrid contribution -0.566 -0.129 0.613 0.844 sum -6.013 -0.632 -26.817 27.491 Atomic orbital electron populations 1.20316 0.83744 1.04547 1.04047 1.23578 0.95191 0.84516 1.05950 1.23116 0.87585 1.00573 1.07143 1.70414 1.23324 1.09054 1.15964 1.25497 0.83870 0.89948 1.02618 1.20459 0.89066 0.96305 0.85756 1.88115 1.45645 1.69743 1.23644 1.22374 0.89184 0.95435 0.96354 1.20049 0.81114 0.79621 0.89922 1.90882 1.47944 1.47630 1.49756 1.48101 1.29740 1.48444 1.08146 1.21840 0.91748 0.96957 0.91080 1.22001 0.95195 1.02128 0.97964 1.21546 0.99791 1.00338 0.94147 1.21949 0.93962 1.00052 1.00626 1.21600 0.94855 1.00822 0.78696 0.90978 1.21299 0.96507 0.95195 0.83791 1.42557 1.36943 1.57799 1.01014 1.19220 1.08807 1.20520 0.87015 0.91234 1.24693 0.98758 1.00929 0.97076 1.69648 1.28250 1.43891 1.17230 0.86256 0.79116 0.79551 0.81272 1.21375 1.21832 1.21389 1.84390 1.17717 1.36628 1.69339 0.90229 0.88982 0.89217 0.79687 0.88497 0.90012 0.90133 0.89875 0.91046 0.90315 0.91445 0.90998 0.91744 0.91832 0.91629 0.89492 0.95850 0.92581 0.78763 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.43 36.00 0.38 -0.02 16 2 C -0.04 -0.40 7.39 -35.69 -0.26 -0.66 16 3 C -0.04 -0.50 11.80 -17.77 -0.21 -0.71 16 4 N -0.46 -6.30 11.29 -11.10 -0.13 -6.42 16 5 C 0.19 2.38 7.97 -12.95 -0.10 2.28 16 6 C 0.16 1.56 6.56 36.01 0.24 1.80 16 7 O -0.35 -4.87 9.86 -55.14 -0.54 -5.42 16 8 C 0.05 0.50 4.77 36.00 0.17 0.67 16 9 C 0.51 8.04 7.61 -10.99 -0.08 7.96 16 10 O -0.49 -10.55 12.05 -14.35 -0.17 -10.73 16 11 N -0.61 -8.55 2.97 -164.96 -0.49 -9.04 16 12 C 0.11 0.96 6.38 -3.48 -0.02 0.94 16 13 C -0.13 -1.19 6.10 -26.38 -0.16 -1.35 16 14 C -0.12 -1.37 5.88 -26.69 -0.16 -1.53 16 15 C -0.13 -2.02 5.11 -26.61 -0.14 -2.16 16 16 C 0.14 2.51 3.09 -67.60 -0.21 2.30 16 17 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 18 C 0.16 3.71 4.14 -4.05 -0.02 3.69 16 19 N -0.74 -20.15 5.38 -59.91 -0.32 -20.47 16 20 C -0.22 -6.82 9.99 -15.06 -0.15 -6.97 16 21 H 0.07 2.12 7.83 -52.48 -0.41 1.71 16 22 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 23 N -0.94 -29.54 13.06 55.49 0.72 -28.82 16 24 Si 0.91 23.89 29.55 -169.99 -5.02 18.87 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 O -0.19 -2.42 10.78 5.36 0.06 -2.36 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.19 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.58 7.71 -51.93 -0.40 0.18 16 36 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.58 6.90 -51.93 -0.36 1.22 16 45 H 0.02 0.60 7.25 -51.93 -0.38 0.22 16 46 H 0.06 1.45 6.23 -51.93 -0.32 1.13 16 47 H 0.38 10.43 6.37 -40.82 -0.26 10.17 16 48 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 389.19 15.07 5.87 5.87 Total: -1.00 -39.89 389.19 -8.33 -48.22 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.48 Total: 4.76 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -0.82 Total: 5.54 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.21 Total: -64.75 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.66 Total: -18.50 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.02 Total: 18.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.89 -8.33 -48.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328631840.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.144 kcal (2) G-P(sol) polarization free energy of solvation -39.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds