Wall clock time and date at job start Tue Mar 31 2020 19:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34338 * 126.44579 * 2 1 4 4 N 1.34480 * 107.66583 * 179.72376 * 3 2 1 5 5 C 1.30251 * 108.70230 * 0.42570 * 4 3 2 6 6 C 1.50700 * 125.61735 * 179.83708 * 5 4 3 7 7 O 1.42904 * 109.47237 * 89.68997 * 6 5 4 8 8 C 1.42900 * 114.00024 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46890 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00154 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00091 * 180.02562 * 9 8 7 12 12 C 1.46930 * 120.62478 * 354.16681 * 11 9 8 13 13 C 1.53627 * 108.54309 * 126.37320 * 12 11 9 14 14 C 1.53040 * 109.24137 * 54.85185 * 13 12 11 15 15 C 1.53039 * 109.54040 * 298.51280 * 14 13 12 16 16 C 1.46919 * 120.63368 * 174.44801 * 11 9 8 17 17 H 1.09004 * 109.58731 * 113.79674 * 16 11 9 18 18 C 1.52997 * 109.58916 * 353.51491 * 16 11 9 19 19 N 1.46494 * 109.47492 * 181.58833 * 18 16 11 20 20 C 1.36938 * 120.00123 * 184.95037 * 19 18 16 21 21 H 1.08005 * 120.00021 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00151 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99524 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47358 * 60.00157 * 24 22 20 26 26 H 1.48499 * 109.47210 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47385 * 299.99760 * 24 22 20 28 28 O 1.33966 * 108.76367 * 359.57428 * 5 4 3 29 29 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47362 * 300.00232 * 1 2 3 31 31 H 1.08998 * 109.47232 * 59.99781 * 1 2 3 32 32 H 1.07996 * 126.16387 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46925 * 329.69379 * 6 5 4 34 34 H 1.08997 * 109.47159 * 209.69083 * 6 5 4 35 35 H 1.08991 * 109.47535 * 300.00313 * 8 7 6 36 36 H 1.09004 * 109.46923 * 60.00549 * 8 7 6 37 37 H 1.09006 * 109.58514 * 246.20367 * 12 11 9 38 38 H 1.08993 * 109.58962 * 6.62915 * 12 11 9 39 39 H 1.09000 * 109.63124 * 294.86415 * 13 12 11 40 40 H 1.08991 * 109.45761 * 174.73752 * 13 12 11 41 41 H 1.08994 * 109.46049 * 178.49308 * 14 13 12 42 42 H 1.08998 * 109.45021 * 58.52360 * 14 13 12 43 43 H 1.08997 * 109.50085 * 301.41534 * 15 14 13 44 44 H 1.08997 * 109.52563 * 181.33425 * 15 14 13 45 45 H 1.09003 * 109.46846 * 301.59280 * 18 16 11 46 46 H 1.09001 * 109.47261 * 61.58639 * 18 16 11 47 47 H 0.96996 * 120.00215 * 4.94970 * 19 18 16 48 48 H 0.97005 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0062 5 6 3.5764 -0.6548 0.0007 6 6 4.8003 -1.5341 0.0013 7 8 5.1869 -1.8117 1.3487 8 6 6.3434 -2.6433 1.4620 9 6 6.6582 -2.8701 2.9182 10 8 5.9606 -2.3694 3.7746 11 7 7.7151 -3.6295 3.2688 12 6 8.4931 -4.3461 2.2490 13 6 9.9740 -3.9710 2.4113 14 6 10.4115 -4.2554 3.8500 15 6 9.5892 -3.3973 4.8142 16 6 8.1074 -3.7613 4.6785 17 1 7.9522 -4.7893 5.0064 18 6 7.2634 -2.8165 5.5364 19 7 7.6824 -2.9222 6.9361 20 6 6.9990 -2.2422 7.9086 21 1 6.1514 -1.6275 7.6436 22 6 7.3957 -2.3428 9.2351 23 7 8.4290 -3.0914 9.5579 24 14 6.4639 -1.4146 10.5615 25 1 5.0476 -1.8606 10.5759 26 1 7.0825 -1.6869 11.8838 27 1 6.5213 0.0423 10.2795 28 8 2.3074 -1.0840 0.0004 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.9822 2.1112 -0.0004 33 1 5.6149 -1.0233 -0.5124 34 1 4.5763 -2.4689 -0.5124 35 1 6.1511 -3.6011 0.9788 36 1 7.1901 -2.1559 0.9785 37 1 8.3687 -5.4207 2.3828 38 1 8.1482 -4.0570 1.2563 39 1 10.1097 -2.9119 2.1924 40 1 10.5764 -4.5647 1.7238 41 1 11.4689 -4.0157 3.9622 42 1 10.2522 -5.3097 4.0762 43 1 9.7285 -2.3436 4.5727 44 1 9.9172 -3.5825 5.8370 45 1 7.4021 -1.7917 5.1919 46 1 6.2116 -3.0894 5.4503 47 1 8.4438 -3.4739 7.1741 48 1 8.7059 -3.1620 10.4849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328631840.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:56 Heat of formation + Delta-G solvation = -52.594545 kcal Electronic energy + Delta-G solvation = -29309.366343 eV Core-core repulsion = 25173.320460 eV Total energy + Delta-G solvation = -4136.045883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.40869 -41.61617 -39.23478 -38.11981 -36.63674 -35.85923 -34.15226 -33.73946 -33.66538 -31.55297 -30.58747 -28.73899 -27.48244 -26.16119 -25.49440 -24.91427 -23.40431 -22.62447 -22.19974 -21.91736 -20.21844 -19.22154 -18.59362 -18.22077 -17.75015 -17.47935 -17.31053 -16.73394 -16.52642 -16.06465 -15.81861 -15.52658 -15.41136 -15.18181 -14.94301 -14.85044 -14.52385 -14.36017 -14.23969 -14.00182 -13.89409 -13.59543 -13.31791 -13.15221 -13.07036 -12.96339 -12.84394 -12.63609 -12.46367 -12.24289 -12.06307 -12.03091 -11.82771 -11.65999 -11.57575 -11.38467 -11.02582 -10.88548 -10.16420 -9.77095 -9.60708 -8.99377 -7.99383 -5.27546 0.22252 1.33125 1.40882 1.45475 1.52038 1.59375 1.63120 1.82864 2.52602 2.75884 3.19170 3.32598 3.56272 3.76305 3.82217 3.86640 3.97464 3.99522 4.06768 4.12028 4.12875 4.16465 4.20073 4.28510 4.29166 4.43420 4.46700 4.60997 4.62548 4.65937 4.70933 4.83969 4.95449 4.97369 5.06904 5.13127 5.13855 5.19949 5.24490 5.27566 5.30912 5.42482 5.50154 5.63384 5.88173 6.23899 6.46394 6.61635 7.23147 7.29723 8.03722 8.32622 9.23899 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.008844 B = 0.002895 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.392333 B = 9668.456715 C =12452.220814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.040 4.040 3 C -0.069 4.069 4 N -0.492 5.492 5 C 0.166 3.834 6 C 0.160 3.840 7 O -0.402 6.402 8 C 0.055 3.945 9 C 0.493 3.507 10 O -0.566 6.566 11 N -0.602 5.602 12 C 0.098 3.902 13 C -0.129 4.129 14 C -0.115 4.115 15 C -0.120 4.120 16 C 0.152 3.848 17 H 0.070 0.930 18 C 0.173 3.827 19 N -0.744 5.744 20 C -0.249 4.249 21 H 0.057 0.943 22 C -0.070 4.070 23 N -0.965 5.965 24 Si 0.975 3.025 25 H -0.280 1.280 26 H -0.284 1.284 27 H -0.281 1.281 28 O -0.210 6.210 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.209 0.791 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.055 0.945 45 H -0.005 1.005 46 H 0.028 0.972 47 H 0.375 0.625 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 -2.294 -31.045 31.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.208 4.208 4 N -0.223 5.223 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.321 6.321 8 C -0.023 4.023 9 C 0.281 3.719 10 O -0.443 6.443 11 N -0.338 5.338 12 C -0.023 4.023 13 C -0.167 4.167 14 C -0.153 4.153 15 C -0.159 4.159 16 C 0.048 3.952 17 H 0.088 0.912 18 C 0.047 3.953 19 N -0.389 5.389 20 C -0.380 4.380 21 H 0.075 0.925 22 C -0.263 4.263 23 N -0.616 5.616 24 Si 0.803 3.197 25 H -0.206 1.206 26 H -0.209 1.209 27 H -0.207 1.207 28 O -0.096 6.096 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.226 0.774 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.107 0.893 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.013 0.987 46 H 0.046 0.954 47 H 0.208 0.792 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.145 -1.561 -30.399 30.871 hybrid contribution -0.690 0.216 1.489 1.655 sum -5.835 -1.345 -28.910 29.523 Atomic orbital electron populations 1.20553 0.80628 1.05429 1.05832 1.24432 0.96880 0.83805 1.04151 1.23608 0.87126 1.02090 1.07945 1.70381 1.24888 1.10069 1.16986 1.26234 0.84807 0.90270 1.02760 1.20841 0.88608 0.97870 0.84295 1.88045 1.46925 1.70731 1.26356 1.22489 0.89816 0.97862 0.92146 1.21201 0.80267 0.78309 0.92086 1.90850 1.50535 1.50606 1.52344 1.48210 1.29838 1.48353 1.07387 1.22347 0.91174 0.97434 0.91327 1.22011 0.95463 1.02777 0.96409 1.21538 0.99383 0.99578 0.94800 1.21829 0.93501 1.00117 1.00446 1.21197 0.94798 0.98692 0.80536 0.91164 1.21098 0.96140 0.95168 0.82928 1.42699 1.36591 1.57325 1.02325 1.19458 1.09040 1.21160 0.88387 0.92457 1.25531 0.99793 1.01937 0.99020 1.69790 1.29320 1.44794 1.17686 0.85204 0.77948 0.78268 0.78299 1.20632 1.20907 1.20740 1.84395 1.18114 1.37595 1.69542 0.89772 0.87838 0.86565 0.77446 0.86155 0.86332 0.85405 0.86102 0.89308 0.85908 0.91757 0.87022 0.90699 0.90948 0.93373 0.92677 0.98717 0.95426 0.79199 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.43 71.23 0.74 0.08 16 2 C -0.04 -0.79 7.39 24.79 0.18 -0.61 16 3 C -0.07 -1.54 11.80 83.40 0.98 -0.55 16 4 N -0.49 -13.74 11.29 -303.83 -3.43 -17.17 16 5 C 0.17 4.18 7.97 88.34 0.70 4.88 16 6 C 0.16 2.78 6.56 71.24 0.47 3.25 16 7 O -0.40 -10.68 9.86 -129.94 -1.28 -11.96 16 8 C 0.06 1.02 4.77 71.24 0.34 1.36 16 9 C 0.49 15.58 7.61 87.66 0.67 16.25 16 10 O -0.57 -26.05 12.05 16.02 0.19 -25.86 16 11 N -0.60 -16.38 2.97 -794.19 -2.36 -18.73 16 12 C 0.10 1.33 6.38 86.51 0.55 1.88 16 13 C -0.13 -1.73 6.10 30.82 0.19 -1.54 16 14 C -0.12 -2.39 5.88 30.62 0.18 -2.21 16 15 C -0.12 -3.94 5.11 30.67 0.16 -3.78 16 16 C 0.15 5.53 3.09 44.98 0.14 5.67 16 17 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 18 C 0.17 8.72 4.14 86.38 0.36 9.08 16 19 N -0.74 -43.29 5.38 -343.46 -1.85 -45.14 16 20 C -0.25 -15.87 9.99 84.03 0.84 -15.03 16 21 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 22 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 23 N -0.97 -62.07 13.06 21.65 0.28 -61.79 16 24 Si 0.97 50.15 29.55 68.60 2.03 52.18 16 25 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 27 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 28 O -0.21 -5.19 10.78 -3.75 -0.04 -5.23 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.21 3.19 8.06 -2.91 -0.02 3.16 16 33 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.13 1.14 7.71 -2.39 -0.02 1.12 16 36 H 0.12 1.32 7.93 -2.39 -0.02 1.30 16 37 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.12 0.66 5.93 -2.39 -0.01 0.65 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 2.12 6.90 -2.39 -0.02 2.11 16 45 H -0.01 -0.28 7.25 -2.39 -0.02 -0.30 16 46 H 0.03 1.57 6.23 -2.39 -0.01 1.55 16 47 H 0.37 21.93 6.37 -92.71 -0.59 21.34 16 48 H 0.25 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -96.29 389.19 0.89 -95.40 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.38 Total: 23.50 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.97 Total: 14.79 kcal Atomic # 7 Polarization: -135.47 SS G_CDS: -7.35 Total: -142.83 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.13 Total: -43.05 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.03 Total: 52.18 kcal Total: -96.29 0.89 -95.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328631840.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.804 kcal (2) G-P(sol) polarization free energy of solvation -96.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds