Wall clock time and date at job start Tue Mar 31 2020 20:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.53618 * 2 1 4 4 C 1.52998 * 109.47365 * 55.61604 * 3 2 1 5 5 H 1.08997 * 109.87341 * 305.55911 * 4 3 2 6 6 C 1.54323 * 109.88093 * 66.57475 * 4 3 2 7 7 C 1.55151 * 102.94635 * 141.61380 * 6 4 3 8 8 C 1.54913 * 101.57698 * 324.49602 * 7 6 4 9 9 N 1.47019 * 109.88567 * 184.38077 * 4 3 2 10 10 C 1.34773 * 125.64739 * 61.62053 * 9 4 3 11 11 O 1.21285 * 120.00307 * 355.55677 * 10 9 4 12 12 C 1.50704 * 120.00376 * 175.55876 * 10 9 4 13 13 C 1.52999 * 109.47306 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46829 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99992 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99917 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99999 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47145 * 60.00446 * 19 17 15 21 21 H 1.48503 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47120 * 300.00231 * 19 17 15 23 23 N 1.47314 * 110.59587 * 122.82558 * 2 1 3 24 24 C 1.34867 * 106.43951 * 118.73055 * 23 2 1 25 25 O 1.21538 * 123.72987 * 179.97438 * 24 23 2 26 26 N 1.33791 * 112.50124 * 359.86699 * 24 23 2 27 27 C 1.34764 * 111.64483 * 0.08445 * 26 24 23 28 28 O 1.21239 * 127.16187 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.46579 * 62.34542 * 1 2 3 30 30 H 1.09001 * 109.46962 * 182.33856 * 1 2 3 31 31 H 1.08994 * 109.47353 * 302.34478 * 1 2 3 32 32 H 1.09001 * 109.47313 * 175.61904 * 3 2 1 33 33 H 1.09000 * 109.46936 * 295.61465 * 3 2 1 34 34 H 1.09006 * 110.72062 * 259.97688 * 6 4 3 35 35 H 1.09000 * 110.72344 * 23.24290 * 6 4 3 36 36 H 1.09000 * 111.00871 * 82.56984 * 7 6 4 37 37 H 1.09003 * 111.00544 * 206.42722 * 7 6 4 38 38 H 1.09004 * 110.36471 * 155.84822 * 8 7 6 39 39 H 1.09005 * 110.36769 * 278.06135 * 8 7 6 40 40 H 1.09004 * 109.46620 * 300.00426 * 12 10 9 41 41 H 1.08998 * 109.46742 * 59.99974 * 12 10 9 42 42 H 1.08992 * 109.47353 * 300.00026 * 13 12 10 43 43 H 1.08995 * 109.46682 * 60.00308 * 13 12 10 44 44 H 1.09004 * 109.46873 * 300.00370 * 14 13 12 45 45 H 1.08998 * 109.46966 * 60.00209 * 14 13 12 46 46 H 0.97000 * 119.99792 * 180.02562 * 18 17 15 47 47 H 0.96995 * 126.69131 * 298.64767 * 23 2 1 48 48 H 0.96996 * 124.18084 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.4828 2.1962 1.1904 5 1 0.3946 2.1355 1.1718 6 6 2.0191 1.6012 2.5095 7 6 2.2352 2.8570 3.3947 8 6 2.7021 3.8988 2.3476 9 7 1.9092 3.6023 1.1406 10 6 1.6231 4.4754 0.1546 11 8 1.0290 4.1004 -0.8340 12 6 2.0415 5.9177 0.2804 13 6 1.5988 6.6876 -0.9655 14 6 2.0230 8.1521 -0.8374 15 6 1.5865 8.9106 -2.0643 16 1 1.0589 8.3994 -2.8559 17 6 1.8597 10.2574 -2.1756 18 7 2.5017 10.8800 -1.2113 19 14 1.3192 11.1975 -3.6966 20 1 -0.1579 11.1191 -3.8282 21 1 1.7308 12.6189 -3.5724 22 1 1.9556 10.6017 -4.8989 23 7 2.0482 -0.7475 1.1588 24 6 2.7645 -1.7758 0.6603 25 8 3.3356 -2.5975 1.3501 26 7 2.7744 -1.7919 -0.6774 27 6 2.0634 -0.7694 -1.1922 28 8 1.8867 -0.5174 -2.3649 29 1 -0.3632 0.4770 -0.9103 30 1 -0.3633 -1.0268 0.0419 31 1 -0.3634 0.5498 0.8682 32 1 3.1537 1.4136 0.0785 33 1 1.7781 1.9288 -0.9267 34 1 1.2832 0.9345 2.9592 35 1 2.9618 1.0802 2.3425 36 1 1.3030 3.1679 3.8663 37 1 3.0091 2.6800 4.1416 38 1 2.4942 4.9094 2.6992 39 1 3.7662 3.7805 2.1430 40 1 1.5755 6.3554 1.1632 41 1 3.1258 5.9745 0.3759 42 1 2.0651 6.2498 -1.8480 43 1 0.5146 6.6308 -1.0615 44 1 1.5563 8.5897 0.0451 45 1 3.1072 8.2092 -0.7412 46 1 2.6936 11.8277 -1.2895 47 1 1.9030 -0.5391 2.0949 48 1 3.2370 -2.4569 -1.2109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329065550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:03 Heat of formation + Delta-G solvation = -90.871039 kcal Electronic energy + Delta-G solvation = -29887.610610 eV Core-core repulsion = 25749.904933 eV Total energy + Delta-G solvation = -4137.705677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.96947 -40.33855 -39.02008 -37.95750 -36.75740 -35.10067 -34.22001 -32.35246 -32.11995 -31.56885 -29.89863 -27.80628 -26.97729 -24.90647 -24.14189 -23.26756 -22.55114 -21.75892 -20.77495 -20.08729 -18.94059 -18.51747 -17.27063 -17.22451 -16.93554 -16.51040 -16.17662 -16.11556 -15.93138 -15.34867 -14.87097 -14.72875 -14.47922 -14.38692 -13.99866 -13.79549 -13.54344 -13.52842 -13.00452 -12.84696 -12.61880 -12.39789 -12.22519 -11.99153 -11.82995 -11.58714 -11.44402 -11.38316 -11.18146 -11.10579 -10.79039 -10.78829 -10.62030 -10.56476 -10.54850 -9.97398 -9.68473 -9.67381 -9.28292 -9.03727 -8.74640 -8.32148 -5.98098 -3.99523 1.18238 2.00182 2.57906 2.63249 2.81774 2.89305 3.36530 3.39919 3.43852 3.50252 4.00868 4.09734 4.19675 4.22777 4.43728 4.48997 4.78040 4.81436 4.84490 4.97814 5.00514 5.10550 5.17335 5.22193 5.28935 5.37983 5.41519 5.45645 5.52202 5.58843 5.64092 5.65761 5.71754 5.75338 5.83358 6.15966 6.29117 6.29297 6.47701 6.70724 6.91273 6.98014 7.14208 7.47071 7.69862 7.70649 7.82423 8.02412 8.32353 8.46313 9.07336 9.64477 11.13370 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002319 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.878198 B =12069.505275 C =13088.066473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 C -0.129 4.129 4 C 0.139 3.861 5 H 0.085 0.915 6 C -0.142 4.142 7 C -0.131 4.131 8 C 0.098 3.902 9 N -0.624 5.624 10 C 0.529 3.471 11 O -0.530 6.530 12 C -0.133 4.133 13 C -0.095 4.095 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 N -0.721 5.721 24 C 0.704 3.296 25 O -0.547 6.547 26 N -0.681 5.681 27 C 0.533 3.467 28 O -0.453 6.453 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.440 0.560 48 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -25.252 11.963 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.034 3.966 3 C -0.168 4.168 4 C 0.035 3.965 5 H 0.102 0.898 6 C -0.180 4.180 7 C -0.169 4.169 8 C -0.025 4.025 9 N -0.360 5.360 10 C 0.320 3.680 11 O -0.405 6.405 12 C -0.173 4.173 13 C -0.133 4.133 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.390 5.390 24 C 0.404 3.596 25 O -0.421 6.421 26 N -0.352 5.352 27 C 0.317 3.683 28 O -0.321 6.321 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.288 0.712 48 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.797 -25.422 11.143 27.768 hybrid contribution 0.050 0.358 -0.559 0.665 sum -0.747 -25.064 10.584 27.218 Atomic orbital electron populations 1.22090 0.89834 1.03648 1.05339 1.21439 0.97545 0.93668 0.83898 1.22243 1.01264 0.90660 1.02630 1.21528 0.99509 0.81838 0.93601 0.89767 1.23005 1.02043 0.98178 0.94780 1.22776 1.02632 0.94363 0.97171 1.22343 0.95603 1.00076 0.84477 1.48696 1.54756 1.10046 1.22503 1.21055 0.78129 0.87950 0.80873 1.90681 1.41018 1.79399 1.29382 1.21845 1.02629 0.89764 1.03075 1.21462 1.00724 0.97330 0.93804 1.19118 0.96533 0.88763 0.97147 1.21230 1.36511 0.93896 1.04034 0.92619 1.25015 0.95276 0.97810 0.96382 1.69952 1.41147 1.10088 1.32586 0.86654 0.79129 0.78701 0.83512 1.20216 1.21339 1.20216 1.46296 1.54618 1.28631 1.09467 1.15978 0.79729 0.82258 0.81681 1.91058 1.48629 1.41484 1.60899 1.44355 1.51328 1.30806 1.08733 1.20719 0.77247 0.80403 0.89909 1.90884 1.56123 1.68467 1.16596 0.89132 0.91277 0.89860 0.90470 0.87112 0.90022 0.89759 0.90232 0.89575 0.89800 0.91241 0.89385 0.89493 0.92664 0.92663 0.96655 0.96655 0.93013 0.71167 0.72586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.59 37.16 0.32 -0.62 16 2 C 0.13 0.92 1.00 -132.09 -0.13 0.79 16 3 C -0.13 -1.17 4.18 -26.73 -0.11 -1.28 16 4 C 0.14 1.13 2.64 -66.96 -0.18 0.96 16 5 H 0.08 0.70 6.11 -51.93 -0.32 0.38 16 6 C -0.14 -0.68 4.47 -24.90 -0.11 -0.79 16 7 C -0.13 -0.65 7.09 -24.58 -0.17 -0.83 16 8 C 0.10 0.75 6.73 -2.53 -0.02 0.73 16 9 N -0.62 -6.68 3.06 -163.02 -0.50 -7.18 16 10 C 0.53 7.98 7.66 -10.99 -0.08 7.90 16 11 O -0.53 -9.78 14.80 5.55 0.08 -9.70 16 12 C -0.13 -2.13 4.64 -27.88 -0.13 -2.26 16 13 C -0.10 -2.01 4.44 -26.73 -0.12 -2.13 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 19 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 N -0.72 -4.33 4.79 -52.84 -0.25 -4.58 16 24 C 0.70 5.93 9.00 -87.71 -0.79 5.14 16 25 O -0.55 -6.41 18.04 5.33 0.10 -6.31 16 26 N -0.68 -5.09 5.70 -15.71 -0.09 -5.18 16 27 C 0.53 4.88 7.48 -10.55 -0.08 4.80 16 28 O -0.45 -5.68 18.02 5.59 0.10 -5.58 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.40 6.21 -51.93 -0.32 0.08 16 32 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 33 H 0.11 1.40 6.59 -51.93 -0.34 1.05 16 34 H 0.08 0.22 7.12 -51.93 -0.37 -0.15 16 35 H 0.08 0.40 6.78 -51.93 -0.35 0.04 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.63 7.47 -51.93 -0.39 0.24 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.28 7.94 -51.93 -0.41 0.87 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.44 1.83 5.73 -40.82 -0.23 1.60 16 48 H 0.43 2.45 8.96 -40.82 -0.37 2.08 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -36.31 384.36 -8.49 -44.81 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.29 Total: -1.92 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.15 Total: -0.88 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.11 Total: -43.15 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.28 Total: -21.60 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.31 -8.49 -44.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329065550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.064 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds