Wall clock time and date at job start Tue Mar 31 2020 20:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.53618 * 2 1 4 4 C 1.52998 * 109.47365 * 55.61604 * 3 2 1 5 5 H 1.08997 * 109.87341 * 305.55911 * 4 3 2 6 6 C 1.54323 * 109.88093 * 66.57475 * 4 3 2 7 7 C 1.55151 * 102.94635 * 141.61380 * 6 4 3 8 8 C 1.54913 * 101.57698 * 324.49602 * 7 6 4 9 9 N 1.47019 * 109.88567 * 184.38077 * 4 3 2 10 10 C 1.34773 * 125.64739 * 61.62053 * 9 4 3 11 11 O 1.21285 * 120.00307 * 355.55677 * 10 9 4 12 12 C 1.50704 * 120.00376 * 175.55876 * 10 9 4 13 13 C 1.52999 * 109.47306 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46829 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99812 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99992 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99917 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99999 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47145 * 60.00446 * 19 17 15 21 21 H 1.48503 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47120 * 300.00231 * 19 17 15 23 23 N 1.47314 * 110.59587 * 122.82558 * 2 1 3 24 24 C 1.34867 * 106.43951 * 118.73055 * 23 2 1 25 25 O 1.21538 * 123.72987 * 179.97438 * 24 23 2 26 26 N 1.33791 * 112.50124 * 359.86699 * 24 23 2 27 27 C 1.34764 * 111.64483 * 0.08445 * 26 24 23 28 28 O 1.21239 * 127.16187 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.46579 * 62.34542 * 1 2 3 30 30 H 1.09001 * 109.46962 * 182.33856 * 1 2 3 31 31 H 1.08994 * 109.47353 * 302.34478 * 1 2 3 32 32 H 1.09001 * 109.47313 * 175.61904 * 3 2 1 33 33 H 1.09000 * 109.46936 * 295.61465 * 3 2 1 34 34 H 1.09006 * 110.72062 * 259.97688 * 6 4 3 35 35 H 1.09000 * 110.72344 * 23.24290 * 6 4 3 36 36 H 1.09000 * 111.00871 * 82.56984 * 7 6 4 37 37 H 1.09003 * 111.00544 * 206.42722 * 7 6 4 38 38 H 1.09004 * 110.36471 * 155.84822 * 8 7 6 39 39 H 1.09005 * 110.36769 * 278.06135 * 8 7 6 40 40 H 1.09004 * 109.46620 * 300.00426 * 12 10 9 41 41 H 1.08998 * 109.46742 * 59.99974 * 12 10 9 42 42 H 1.08992 * 109.47353 * 300.00026 * 13 12 10 43 43 H 1.08995 * 109.46682 * 60.00308 * 13 12 10 44 44 H 1.09004 * 109.46873 * 300.00370 * 14 13 12 45 45 H 1.08998 * 109.46966 * 60.00209 * 14 13 12 46 46 H 0.97000 * 119.99792 * 180.02562 * 18 17 15 47 47 H 0.96995 * 126.69131 * 298.64767 * 23 2 1 48 48 H 0.96996 * 124.18084 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.4828 2.1962 1.1904 5 1 0.3946 2.1355 1.1718 6 6 2.0191 1.6012 2.5095 7 6 2.2352 2.8570 3.3947 8 6 2.7021 3.8988 2.3476 9 7 1.9092 3.6023 1.1406 10 6 1.6231 4.4754 0.1546 11 8 1.0290 4.1004 -0.8340 12 6 2.0415 5.9177 0.2804 13 6 1.5988 6.6876 -0.9655 14 6 2.0230 8.1521 -0.8374 15 6 1.5865 8.9106 -2.0643 16 1 1.0589 8.3994 -2.8559 17 6 1.8597 10.2574 -2.1756 18 7 2.5017 10.8800 -1.2113 19 14 1.3192 11.1975 -3.6966 20 1 -0.1579 11.1191 -3.8282 21 1 1.7308 12.6189 -3.5724 22 1 1.9556 10.6017 -4.8989 23 7 2.0482 -0.7475 1.1588 24 6 2.7645 -1.7758 0.6603 25 8 3.3356 -2.5975 1.3501 26 7 2.7744 -1.7919 -0.6774 27 6 2.0634 -0.7694 -1.1922 28 8 1.8867 -0.5174 -2.3649 29 1 -0.3632 0.4770 -0.9103 30 1 -0.3633 -1.0268 0.0419 31 1 -0.3634 0.5498 0.8682 32 1 3.1537 1.4136 0.0785 33 1 1.7781 1.9288 -0.9267 34 1 1.2832 0.9345 2.9592 35 1 2.9618 1.0802 2.3425 36 1 1.3030 3.1679 3.8663 37 1 3.0091 2.6800 4.1416 38 1 2.4942 4.9094 2.6992 39 1 3.7662 3.7805 2.1430 40 1 1.5755 6.3554 1.1632 41 1 3.1258 5.9745 0.3759 42 1 2.0651 6.2498 -1.8480 43 1 0.5146 6.6308 -1.0615 44 1 1.5563 8.5897 0.0451 45 1 3.1072 8.2092 -0.7412 46 1 2.6936 11.8277 -1.2895 47 1 1.9030 -0.5391 2.0949 48 1 3.2370 -2.4569 -1.2109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329065550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:02 Heat of formation + Delta-G solvation = -117.676657 kcal Electronic energy + Delta-G solvation = -29888.772989 eV Core-core repulsion = 25749.904933 eV Total energy + Delta-G solvation = -4138.868055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.67243 -41.25383 -39.83445 -38.93238 -37.54857 -36.12703 -35.80119 -34.06149 -32.84450 -32.57860 -30.56013 -29.51233 -27.59287 -26.10311 -25.41290 -23.96160 -23.62661 -22.40250 -21.94975 -21.22780 -19.94397 -19.25411 -18.50472 -18.10060 -17.90931 -17.67961 -17.18055 -16.93042 -16.75157 -16.58612 -16.44700 -15.66498 -15.55233 -15.33655 -14.96656 -14.70027 -14.39740 -14.34518 -14.14676 -13.77737 -13.71432 -13.56604 -13.35979 -13.14113 -12.95516 -12.63078 -12.58193 -12.49273 -12.44521 -12.14678 -12.01988 -11.77936 -11.67488 -11.56088 -11.55092 -11.44116 -11.31738 -11.26090 -10.74500 -10.54159 -10.51618 -9.63513 -8.20355 -6.30214 0.42405 1.36775 1.39384 1.42129 1.50200 1.64031 1.87472 1.92047 2.06501 2.41548 2.80884 3.12578 3.35171 3.51004 3.56172 3.66475 3.92105 3.95024 4.16154 4.17735 4.20263 4.24217 4.29518 4.46013 4.59188 4.64106 4.68424 4.75383 4.82914 4.88793 4.90991 4.95542 4.98979 5.03846 5.10040 5.15020 5.16666 5.19438 5.36270 5.48327 5.54268 5.75030 5.75244 5.79350 5.86453 6.27183 6.29506 6.49361 6.84927 7.06810 7.20302 7.38366 8.90954 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002319 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.878198 B =12069.505275 C =13088.066473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.137 3.863 3 C -0.122 4.122 4 C 0.132 3.868 5 H 0.087 0.913 6 C -0.135 4.135 7 C -0.121 4.121 8 C 0.084 3.916 9 N -0.617 5.617 10 C 0.528 3.472 11 O -0.574 6.574 12 C -0.125 4.125 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.548 4.548 16 H 0.051 0.949 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.270 1.270 23 N -0.697 5.697 24 C 0.708 3.292 25 O -0.575 6.575 26 N -0.672 5.672 27 C 0.532 3.468 28 O -0.492 6.492 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.001 0.999 45 H -0.001 1.001 46 H 0.265 0.735 47 H 0.452 0.548 48 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 -26.330 13.953 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.045 3.955 3 C -0.162 4.162 4 C 0.029 3.971 5 H 0.105 0.895 6 C -0.173 4.173 7 C -0.159 4.159 8 C -0.038 4.038 9 N -0.351 5.351 10 C 0.318 3.682 11 O -0.453 6.453 12 C -0.165 4.165 13 C -0.119 4.119 14 C -0.009 4.009 15 C -0.586 4.586 16 H 0.069 0.931 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.785 3.215 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.196 1.196 23 N -0.367 5.367 24 C 0.407 3.593 25 O -0.451 6.451 26 N -0.342 5.342 27 C 0.318 3.682 28 O -0.362 6.362 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.017 0.983 46 H 0.074 0.926 47 H 0.303 0.697 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.005 -26.524 13.206 29.647 hybrid contribution 0.166 0.686 -1.142 1.343 sum -0.840 -25.838 12.064 28.528 Atomic orbital electron populations 1.22112 0.88580 1.04707 1.05379 1.21257 0.98278 0.92417 0.83502 1.22088 1.01202 0.91420 1.01457 1.21796 0.99860 0.80310 0.95093 0.89500 1.23053 1.03102 0.98599 0.92516 1.22778 1.03610 0.92908 0.96563 1.22689 0.95689 1.01451 0.83944 1.48626 1.53717 1.10629 1.22080 1.20704 0.78120 0.88054 0.81334 1.90670 1.43308 1.80015 1.31340 1.21640 1.03519 0.90467 1.00853 1.21153 0.99602 0.95240 0.95932 1.18999 0.95177 0.91236 0.95526 1.21662 1.36987 0.94878 1.05099 0.93112 1.25891 0.95130 0.98752 0.99643 1.70056 1.41830 1.10580 1.34416 0.85578 0.79009 0.77444 0.79500 1.19363 1.20316 1.19559 1.46131 1.53550 1.27385 1.09667 1.15981 0.79519 0.82245 0.81514 1.91054 1.49947 1.42695 1.61425 1.44287 1.50719 1.30521 1.08714 1.20977 0.76824 0.80567 0.89797 1.90868 1.57578 1.69502 1.18284 0.90956 0.89873 0.87858 0.90634 0.90920 0.86796 0.89184 0.89617 0.87273 0.89638 0.90489 0.87657 0.88148 0.94320 0.93979 0.98037 0.98252 0.92645 0.69661 0.71707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.59 71.98 0.62 -1.03 16 2 C 0.14 1.83 1.00 2.98 0.00 1.83 16 3 C -0.12 -2.15 4.18 30.59 0.13 -2.02 16 4 C 0.13 1.90 2.64 45.34 0.12 2.02 16 5 H 0.09 1.25 6.11 -2.39 -0.01 1.23 16 6 C -0.14 -0.75 4.47 31.78 0.14 -0.61 16 7 C -0.12 -0.70 7.09 31.99 0.23 -0.48 16 8 C 0.08 1.07 6.73 86.86 0.58 1.65 16 9 N -0.62 -12.42 3.06 -788.06 -2.42 -14.84 16 10 C 0.53 16.02 7.66 87.66 0.67 16.69 16 11 O -0.57 -22.05 14.80 -3.04 -0.05 -22.10 16 12 C -0.13 -4.01 4.64 29.85 0.14 -3.88 16 13 C -0.08 -3.56 4.44 30.60 0.14 -3.42 16 14 C 0.03 1.47 4.97 29.85 0.15 1.61 16 15 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 19 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 N -0.70 -6.52 4.79 -439.33 -2.11 -8.62 16 24 C 0.71 10.60 9.00 179.33 1.61 12.21 16 25 O -0.58 -12.42 18.04 -3.83 -0.07 -12.49 16 26 N -0.67 -9.45 5.70 -440.86 -2.51 -11.96 16 27 C 0.53 9.66 7.48 87.94 0.66 10.32 16 28 O -0.49 -12.82 18.02 -2.90 -0.05 -12.87 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.72 6.21 -2.39 -0.01 0.71 16 32 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 33 H 0.07 1.93 6.59 -2.39 -0.02 1.91 16 34 H 0.11 -0.02 7.12 -2.38 -0.02 -0.04 16 35 H 0.09 0.47 6.78 -2.39 -0.02 0.45 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.09 1.09 7.47 -2.38 -0.02 1.07 16 39 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.11 2.99 7.94 -2.38 -0.02 2.97 16 41 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 43 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 44 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 45 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.45 1.97 5.73 -92.71 -0.53 1.44 16 48 H 0.44 4.72 8.96 -92.71 -0.83 3.89 16 Total: -1.00 -81.81 384.36 0.63 -81.18 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -0.36 Total: 6.92 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 5.88 Total: 3.53 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -6.75 Total: -91.43 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -0.17 Total: -47.46 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -81.81 0.63 -81.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329065550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.500 kcal (2) G-P(sol) polarization free energy of solvation -81.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds