Wall clock time and date at job start Tue Mar 31 2020 20:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.54055 * 2 1 4 4 C 1.52997 * 109.47200 * 49.71969 * 3 2 1 5 5 H 1.08996 * 110.00027 * 317.47147 * 4 3 2 6 6 C 1.54317 * 109.77361 * 78.62169 * 4 3 2 7 7 C 1.55159 * 102.86118 * 141.88694 * 6 4 3 8 8 C 1.54912 * 101.58467 * 324.30441 * 7 6 4 9 9 N 1.47026 * 109.88496 * 196.37234 * 4 3 2 10 10 C 1.34777 * 125.64565 * 61.68283 * 9 4 3 11 11 O 1.21280 * 119.99962 * 354.79696 * 10 9 4 12 12 C 1.50693 * 120.00013 * 174.52736 * 10 9 4 13 13 C 1.52998 * 109.47200 * 180.27359 * 12 10 9 14 14 C 1.53009 * 109.47072 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.46830 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00242 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99675 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99974 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99803 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46737 * 90.00301 * 19 17 15 21 21 H 1.48505 * 109.46974 * 210.00159 * 19 17 15 22 22 H 1.48499 * 109.47041 * 330.00095 * 19 17 15 23 23 N 1.47310 * 110.60096 * 237.16304 * 2 1 3 24 24 C 1.34518 * 106.62226 * 241.32397 * 23 2 1 25 25 O 1.21542 * 123.77043 * 180.02562 * 24 23 2 26 26 N 1.33790 * 112.46015 * 0.02562 * 24 23 2 27 27 C 1.34761 * 111.64196 * 359.97438 * 26 24 23 28 28 O 1.21241 * 127.15665 * 180.02562 * 27 26 24 29 29 H 1.08998 * 109.46814 * 52.88665 * 1 2 3 30 30 H 1.08991 * 109.47377 * 172.88958 * 1 2 3 31 31 H 1.09006 * 109.47209 * 292.89268 * 1 2 3 32 32 H 1.09001 * 109.46934 * 289.72357 * 3 2 1 33 33 H 1.08992 * 109.47691 * 169.72476 * 3 2 1 34 34 H 1.09001 * 110.92193 * 23.47766 * 6 4 3 35 35 H 1.08994 * 110.74553 * 260.21362 * 6 4 3 36 36 H 1.09007 * 111.00618 * 206.23307 * 7 6 4 37 37 H 1.08998 * 111.00704 * 82.37853 * 7 6 4 38 38 H 1.09005 * 110.36791 * 278.17389 * 8 7 6 39 39 H 1.08991 * 110.46286 * 155.89469 * 8 7 6 40 40 H 1.09004 * 109.47105 * 300.27190 * 12 10 9 41 41 H 1.09001 * 109.47592 * 60.26876 * 12 10 9 42 42 H 1.08998 * 109.47020 * 299.99217 * 13 12 10 43 43 H 1.08994 * 109.47338 * 59.99957 * 13 12 10 44 44 H 1.08998 * 109.46521 * 299.99476 * 14 13 12 45 45 H 1.08994 * 109.47112 * 59.99773 * 14 13 12 46 46 H 0.97005 * 119.99945 * 180.02562 * 18 17 15 47 47 H 0.96999 * 126.68403 * 61.28508 * 23 2 1 48 48 H 0.97003 * 124.17537 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 6 1.3725 2.2375 1.1004 5 1 0.3067 2.0096 1.1129 6 6 2.0000 1.8998 2.4692 7 6 2.0115 3.2727 3.1920 8 6 2.3073 4.2396 2.0185 9 7 1.5736 3.6757 0.8708 10 6 1.1519 4.3655 -0.2076 11 8 0.6337 3.7820 -1.1360 12 6 1.3187 5.8623 -0.2571 13 6 0.7556 6.3949 -1.5762 14 6 0.9256 7.9147 -1.6267 15 6 0.3704 8.4393 -2.9258 16 1 -0.0602 7.7570 -3.6438 17 6 0.4122 9.7903 -3.1978 18 7 0.9370 10.6211 -2.3237 19 14 -0.2754 10.4406 -4.8084 20 1 -1.7124 10.7725 -4.6349 21 1 0.4700 11.6613 -5.2078 22 1 -0.1303 9.4048 -5.8626 23 7 2.0483 -0.7477 -1.1586 24 6 2.7627 -1.7752 -0.6651 25 8 3.3327 -2.5958 -1.3572 26 7 2.7757 -1.7929 0.6726 27 6 2.0662 -0.7707 1.1901 28 8 1.8929 -0.5196 2.3635 29 1 -0.3633 0.6201 -0.8195 30 1 -0.3633 -1.0197 -0.1272 31 1 -0.3634 0.3998 0.9468 32 1 1.8695 1.8946 -0.9674 33 1 3.1411 1.4182 0.1833 34 1 3.0141 1.5187 2.3491 35 1 1.3820 1.1839 3.0111 36 1 2.8028 3.3135 3.9407 37 1 1.0410 3.4868 3.6395 38 1 3.3767 4.2661 1.8090 39 1 1.9415 5.2404 2.2479 40 1 0.7820 6.3155 0.5764 41 1 2.3773 6.1125 -0.1865 42 1 1.2925 5.9418 -2.4097 43 1 -0.3029 6.1448 -1.6468 44 1 0.3891 8.3681 -0.7933 45 1 1.9843 8.1644 -1.5564 46 1 0.9661 11.5716 -2.5149 47 1 1.9024 -0.5399 -2.0947 48 1 3.2386 -2.4593 1.2042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329065551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:08 Heat of formation + Delta-G solvation = -88.570139 kcal Electronic energy + Delta-G solvation = -29991.646604 eV Core-core repulsion = 25854.040702 eV Total energy + Delta-G solvation = -4137.605902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.98568 -40.29914 -39.09820 -37.61966 -36.91133 -35.09308 -34.21858 -32.55873 -31.98677 -31.51077 -29.59733 -27.78731 -26.71690 -24.87442 -24.18282 -23.17748 -22.72874 -21.66292 -20.74483 -19.92036 -18.90548 -18.57500 -17.31184 -17.03999 -16.94514 -16.53478 -16.20104 -16.00007 -15.92691 -15.33159 -14.86515 -14.70197 -14.57475 -14.43167 -13.93754 -13.93386 -13.48592 -13.12345 -12.98736 -12.77550 -12.45874 -12.27418 -12.19479 -11.93541 -11.84430 -11.58963 -11.39016 -11.27536 -11.02724 -10.96923 -10.81763 -10.73446 -10.59971 -10.54445 -10.30730 -9.93500 -9.69134 -9.66471 -9.28141 -9.02774 -8.68443 -8.33298 -5.98935 -4.00376 1.14147 1.99880 2.58551 2.65214 2.83656 2.95634 3.33689 3.39652 3.44173 3.50024 4.08303 4.20046 4.29505 4.39388 4.48210 4.64820 4.85178 4.89810 4.95092 5.06047 5.10727 5.15947 5.26504 5.37241 5.40462 5.50250 5.52418 5.58286 5.60925 5.66736 5.69656 5.72717 5.81180 5.89294 6.01116 6.19497 6.33901 6.37964 6.50085 6.70394 6.90940 6.97524 7.13643 7.53129 7.69575 7.72566 7.82152 8.01678 8.34340 8.45491 9.06719 9.63654 11.12559 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.002348 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.367906 B =11919.850416 C =13052.230259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 C -0.127 4.127 4 C 0.135 3.865 5 H 0.086 0.914 6 C -0.130 4.130 7 C -0.136 4.136 8 C 0.098 3.902 9 N -0.623 5.623 10 C 0.530 3.470 11 O -0.536 6.536 12 C -0.135 4.135 13 C -0.094 4.094 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 N -0.715 5.715 24 C 0.704 3.296 25 O -0.546 6.546 26 N -0.681 5.681 27 C 0.529 3.471 28 O -0.454 6.454 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.443 0.557 48 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -23.501 13.471 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 C -0.166 4.166 4 C 0.031 3.969 5 H 0.103 0.897 6 C -0.167 4.167 7 C -0.174 4.174 8 C -0.025 4.025 9 N -0.359 5.359 10 C 0.321 3.679 11 O -0.412 6.412 12 C -0.174 4.174 13 C -0.132 4.132 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 N -0.380 5.380 24 C 0.403 3.597 25 O -0.420 6.420 26 N -0.352 5.352 27 C 0.315 3.685 28 O -0.323 6.323 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.288 0.712 48 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 3.083 -23.802 13.144 27.364 hybrid contribution 0.004 0.302 -0.976 1.021 sum 3.086 -23.500 12.168 26.643 Atomic orbital electron populations 1.22128 0.89829 1.03787 1.05283 1.21429 0.97571 0.93699 0.83843 1.22249 1.00435 0.90522 1.03404 1.21666 1.00200 0.81112 0.93881 0.89664 1.23135 1.01965 0.97327 0.94307 1.22843 1.02812 0.94788 0.96994 1.22348 0.96554 0.98230 0.85389 1.48744 1.58057 1.08265 1.20816 1.21005 0.76472 0.90448 0.79959 1.90639 1.43613 1.71337 1.35610 1.21847 1.03403 0.89295 1.02888 1.21449 1.00055 0.98973 0.92730 1.19125 0.97042 0.88375 0.97094 1.21264 1.38906 0.92283 1.03166 0.92595 1.25020 0.95486 0.97133 0.96865 1.69959 1.45501 1.03070 1.35189 0.86599 0.79015 0.78403 0.84040 1.20672 1.21261 1.19839 1.45729 1.54310 1.28406 1.09509 1.15867 0.79733 0.82372 0.81721 1.91068 1.48594 1.41650 1.60678 1.44370 1.51457 1.30625 1.08717 1.20831 0.77098 0.80446 0.90115 1.90806 1.57075 1.67713 1.16662 0.89232 0.91287 0.89497 0.87530 0.90838 0.91251 0.87489 0.89956 0.90492 0.91433 0.89992 0.89381 0.89533 0.92752 0.92700 0.96644 0.96647 0.93059 0.71200 0.72639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.12 37.16 0.30 -0.72 16 2 C 0.13 0.93 1.11 -132.09 -0.15 0.79 16 3 C -0.13 -1.15 4.52 -26.73 -0.12 -1.27 16 4 C 0.14 1.28 2.70 -66.96 -0.18 1.10 16 5 H 0.09 0.82 5.63 -51.93 -0.29 0.53 16 6 C -0.13 -1.01 4.29 -24.90 -0.11 -1.12 16 7 C -0.14 -0.97 7.08 -24.58 -0.17 -1.14 16 8 C 0.10 0.86 6.74 -2.53 -0.02 0.84 16 9 N -0.62 -7.11 3.07 -163.02 -0.50 -7.61 16 10 C 0.53 8.01 7.62 -10.99 -0.08 7.92 16 11 O -0.54 -9.55 14.75 5.56 0.08 -9.47 16 12 C -0.13 -2.16 4.63 -27.89 -0.13 -2.29 16 13 C -0.09 -1.97 4.44 -26.73 -0.12 -2.09 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 19 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 N -0.71 -5.33 5.90 -52.94 -0.31 -5.65 16 24 C 0.70 6.40 8.99 -88.03 -0.79 5.61 16 25 O -0.55 -6.93 18.04 5.33 0.10 -6.83 16 26 N -0.68 -4.71 5.70 -15.79 -0.09 -4.80 16 27 C 0.53 3.96 7.01 -10.56 -0.07 3.89 16 28 O -0.45 -3.87 13.24 5.59 0.07 -3.79 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.56 6.50 -51.93 -0.34 0.22 16 32 H 0.11 1.21 6.36 -51.93 -0.33 0.88 16 33 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 34 H 0.07 0.55 7.03 -51.93 -0.36 0.19 16 35 H 0.11 0.86 5.96 -51.93 -0.31 0.55 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.70 7.46 -51.93 -0.39 0.31 16 40 H 0.09 1.30 7.95 -51.93 -0.41 0.89 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 43 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.44 2.83 8.96 -40.82 -0.37 2.46 16 48 H 0.43 2.12 8.96 -40.82 -0.37 1.75 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -34.71 381.49 -8.70 -43.42 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.33 Total: 0.02 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.19 Total: -1.70 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.17 Total: -44.19 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.25 Total: -20.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.71 -8.70 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329065551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.153 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds