Wall clock time and date at job start Tue Mar 31 2020 20:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.53462 * 2 1 4 4 C 1.53003 * 109.47205 * 306.24830 * 3 2 1 5 5 H 1.08995 * 109.86974 * 52.57384 * 4 3 2 6 6 C 1.54323 * 109.87983 * 291.39827 * 4 3 2 7 7 C 1.55161 * 102.93877 * 218.38918 * 6 4 3 8 8 C 1.54694 * 101.67610 * 35.33490 * 7 6 4 9 9 N 1.47016 * 109.87905 * 173.58844 * 4 3 2 10 10 C 1.34781 * 125.65427 * 298.31887 * 9 4 3 11 11 O 1.21279 * 119.99587 * 355.18981 * 10 9 4 12 12 C 1.50699 * 120.00389 * 175.18878 * 10 9 4 13 13 C 1.52995 * 109.46905 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46938 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47358 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99811 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00362 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00326 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99600 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47354 * 90.00170 * 19 17 15 21 21 H 1.48511 * 109.46912 * 209.99736 * 19 17 15 22 22 H 1.48502 * 109.47402 * 329.99602 * 19 17 15 23 23 N 1.47313 * 110.73035 * 237.08027 * 2 1 3 24 24 C 1.34529 * 106.61505 * 241.40898 * 23 2 1 25 25 O 1.21543 * 123.76699 * 179.97438 * 24 23 2 26 26 N 1.33788 * 112.46146 * 0.02562 * 24 23 2 27 27 C 1.34772 * 111.64457 * 0.02562 * 26 24 23 28 28 O 1.21227 * 127.15652 * 179.97438 * 27 26 24 29 29 H 1.09003 * 109.46572 * 56.14782 * 1 2 3 30 30 H 1.09004 * 109.47241 * 176.14036 * 1 2 3 31 31 H 1.08990 * 109.47321 * 296.14459 * 1 2 3 32 32 H 1.09000 * 109.47185 * 186.24266 * 3 2 1 33 33 H 1.09003 * 109.46968 * 66.24615 * 3 2 1 34 34 H 1.08993 * 110.72161 * 336.75216 * 6 4 3 35 35 H 1.08994 * 110.71688 * 100.02781 * 6 4 3 36 36 H 1.08995 * 111.00186 * 153.57976 * 7 6 4 37 37 H 1.09005 * 111.00542 * 277.39068 * 7 6 4 38 38 H 1.09001 * 110.38646 * 204.36244 * 8 7 6 39 39 H 1.08998 * 110.23290 * 82.11876 * 8 7 6 40 40 H 1.08996 * 109.46691 * 300.00321 * 12 10 9 41 41 H 1.09005 * 109.46794 * 59.99991 * 12 10 9 42 42 H 1.08996 * 109.47803 * 299.99756 * 13 12 10 43 43 H 1.09005 * 109.47307 * 60.00421 * 13 12 10 44 44 H 1.09000 * 109.47604 * 300.00451 * 14 13 12 45 45 H 1.09001 * 109.46926 * 60.00561 * 14 13 12 46 46 H 0.96996 * 119.99989 * 179.97438 * 18 17 15 47 47 H 0.96992 * 126.69405 * 61.39368 * 23 2 1 48 48 H 0.97005 * 124.17898 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.4468 2.2096 -1.1633 5 1 0.3610 2.1210 -1.1312 6 6 1.9819 1.6629 -2.5036 7 6 2.1524 2.9462 -3.3590 8 6 2.5997 3.9751 -2.2940 9 7 1.8357 3.6251 -1.0828 10 6 1.5379 4.4653 -0.0719 11 8 0.8229 4.0940 0.8345 12 6 2.0935 5.8662 -0.0678 13 6 1.6060 6.6045 1.1803 14 6 2.1706 8.0266 1.1848 15 6 1.6909 8.7537 2.4145 16 1 1.0480 8.2517 3.1223 17 6 2.0727 10.0599 2.6360 18 7 1.6537 10.6946 3.7089 19 14 3.1841 10.9284 1.4113 20 1 2.3539 11.6067 0.3838 21 1 4.0123 11.9356 2.1222 22 1 4.0699 9.9338 0.7546 23 7 2.0514 -0.7488 -1.1565 24 6 2.7646 -1.7758 -0.6601 25 8 3.3357 -2.5975 -1.3498 26 7 2.7739 -1.7922 0.6777 27 6 2.0620 -0.7701 1.1923 28 8 1.8847 -0.5185 2.3649 29 1 -0.3632 0.5725 -0.8535 30 1 -0.3634 -1.0254 -0.0692 31 1 -0.3633 0.4528 0.9224 32 1 3.1508 1.4147 -0.1117 33 1 1.8065 1.9182 0.9406 34 1 2.9404 1.1640 -2.3615 35 1 1.2586 0.9879 -2.9610 36 1 2.9209 2.8093 -4.1197 37 1 1.2061 3.2427 -3.8116 38 1 2.3555 4.9870 -2.6175 39 1 3.6697 3.8835 -2.1074 40 1 3.1827 5.8249 -0.0639 41 1 1.7531 6.3946 -0.9584 42 1 0.5168 6.6457 1.1760 43 1 1.9460 6.0762 2.0711 44 1 3.2598 7.9851 1.1894 45 1 1.8308 8.5552 0.2941 46 1 1.9226 11.6134 3.8648 47 1 1.9083 -0.5418 -2.0932 48 1 3.2361 -2.4575 1.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329065553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:17 Heat of formation + Delta-G solvation = -88.106325 kcal Electronic energy + Delta-G solvation = -29947.474985 eV Core-core repulsion = 25809.889196 eV Total energy + Delta-G solvation = -4137.585790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.00445 -40.39967 -39.04472 -38.01193 -36.79769 -35.12576 -34.33838 -32.38914 -32.16822 -31.68691 -29.94051 -28.30514 -27.02059 -24.95946 -24.15933 -23.27818 -22.48269 -21.77119 -20.76247 -20.03442 -19.02947 -18.55289 -17.34543 -17.22758 -16.96318 -16.69991 -16.39239 -16.19190 -16.01696 -15.43847 -14.91473 -14.81354 -14.52560 -14.20290 -14.03261 -13.84843 -13.61288 -13.51611 -13.03728 -12.94670 -12.70875 -12.57773 -12.40601 -12.04910 -11.98440 -11.70400 -11.62045 -11.46737 -11.21378 -11.15482 -10.96808 -10.80424 -10.79768 -10.59039 -10.05025 -9.98074 -9.84617 -9.71261 -9.45229 -9.14116 -8.79953 -8.51604 -6.01050 -3.98910 1.16539 1.98372 2.56045 2.60206 2.75221 2.83489 3.30550 3.37866 3.40424 3.47276 3.96970 4.04607 4.16123 4.18468 4.39896 4.46388 4.71849 4.77584 4.81733 4.91568 4.92506 5.08475 5.14293 5.20097 5.24650 5.31856 5.33605 5.39792 5.47834 5.51690 5.55903 5.58219 5.65022 5.67608 5.78404 6.02961 6.19733 6.26343 6.46079 6.54118 6.67307 6.90385 6.96225 7.33959 7.42550 7.44385 7.68864 7.82003 8.25584 8.58768 9.05822 9.60886 11.12666 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.002419 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.313340 B =11570.402558 C =12437.344964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 C -0.128 4.128 4 C 0.137 3.863 5 H 0.087 0.913 6 C -0.140 4.140 7 C -0.131 4.131 8 C 0.099 3.901 9 N -0.624 5.624 10 C 0.529 3.471 11 O -0.526 6.526 12 C -0.137 4.137 13 C -0.088 4.088 14 C -0.014 4.014 15 C -0.519 4.519 16 H 0.073 0.927 17 C 0.064 3.936 18 N -0.904 5.904 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 N -0.720 5.720 24 C 0.705 3.295 25 O -0.547 6.547 26 N -0.681 5.681 27 C 0.532 3.468 28 O -0.452 6.452 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.015 0.985 45 H 0.010 0.990 46 H 0.262 0.738 47 H 0.439 0.561 48 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -24.945 -17.573 30.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 C -0.167 4.167 4 C 0.034 3.966 5 H 0.104 0.896 6 C -0.178 4.178 7 C -0.169 4.169 8 C -0.025 4.025 9 N -0.360 5.360 10 C 0.320 3.680 11 O -0.401 6.401 12 C -0.176 4.176 13 C -0.126 4.126 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.543 5.543 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 N -0.388 5.388 24 C 0.404 3.596 25 O -0.421 6.421 26 N -0.353 5.353 27 C 0.317 3.683 28 O -0.319 6.319 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.287 0.713 48 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 1.169 -25.119 -16.639 30.153 hybrid contribution 0.859 0.361 -0.765 1.206 sum 2.028 -24.758 -17.404 30.331 Atomic orbital electron populations 1.22111 0.89756 1.03682 1.05459 1.21424 0.97578 0.93547 0.83921 1.22207 1.01128 0.90740 1.02617 1.21556 0.99846 0.81587 0.93634 0.89568 1.22965 1.02115 0.98166 0.94584 1.22738 1.02746 0.94255 0.97204 1.22290 0.96156 0.99685 0.84322 1.48695 1.56393 1.09798 1.21161 1.20947 0.79869 0.87255 0.79974 1.90707 1.36494 1.77394 1.35520 1.21873 1.01846 0.91001 1.02919 1.21283 1.00894 0.96350 0.94044 1.19599 0.96030 0.92099 0.97376 1.21158 1.30793 0.97327 1.06396 0.90913 1.25052 0.95923 0.97398 0.95278 1.69920 1.45688 1.11778 1.26937 0.86765 0.81275 0.79523 0.81598 1.20362 1.21450 1.19063 1.46114 1.54572 1.28620 1.09460 1.15882 0.79736 0.82271 0.81702 1.91063 1.48659 1.41515 1.60889 1.44366 1.51318 1.30838 1.08742 1.20714 0.77272 0.80451 0.89908 1.90888 1.56025 1.68452 1.16581 0.89788 0.91222 0.89058 0.90341 0.87479 0.89819 0.89985 0.89549 0.90286 0.89981 0.91263 0.89408 0.89477 0.92046 0.92023 0.96710 0.97148 0.92785 0.71330 0.72562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.59 37.16 0.32 -0.61 16 2 C 0.13 0.89 1.01 -132.09 -0.13 0.76 16 3 C -0.13 -1.10 4.21 -26.73 -0.11 -1.21 16 4 C 0.14 1.06 2.58 -66.95 -0.17 0.89 16 5 H 0.09 0.69 5.94 -51.93 -0.31 0.38 16 6 C -0.14 -0.60 4.53 -24.89 -0.11 -0.72 16 7 C -0.13 -0.58 7.07 -24.70 -0.17 -0.76 16 8 C 0.10 0.68 6.64 -2.65 -0.02 0.66 16 9 N -0.62 -6.31 3.07 -163.16 -0.50 -6.81 16 10 C 0.53 7.64 7.56 -10.98 -0.08 7.56 16 11 O -0.53 -9.52 15.14 5.56 0.08 -9.43 16 12 C -0.14 -2.03 4.79 -27.89 -0.13 -2.17 16 13 C -0.09 -1.77 4.44 -26.73 -0.12 -1.89 16 14 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 15 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 16 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 19 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 23 N -0.72 -4.11 4.90 -52.94 -0.26 -4.37 16 24 C 0.70 5.79 8.99 -88.02 -0.79 4.99 16 25 O -0.55 -6.31 18.04 5.33 0.10 -6.21 16 26 N -0.68 -4.99 5.70 -15.79 -0.09 -5.08 16 27 C 0.53 4.79 7.48 -10.55 -0.08 4.71 16 28 O -0.45 -5.64 18.02 5.60 0.10 -5.53 16 29 H 0.08 0.40 6.06 -51.93 -0.31 0.09 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.66 7.99 -51.93 -0.41 0.25 16 33 H 0.11 1.30 6.85 -51.93 -0.36 0.94 16 34 H 0.08 0.35 6.90 -51.93 -0.36 -0.01 16 35 H 0.08 0.19 7.20 -51.93 -0.37 -0.19 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.55 7.51 -51.93 -0.39 0.16 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.14 7.76 -51.93 -0.40 0.73 16 42 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 43 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 44 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 45 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.44 1.68 5.96 -40.82 -0.24 1.43 16 48 H 0.43 2.40 8.96 -40.82 -0.37 2.03 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -37.23 381.39 -8.13 -45.36 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.26 Total: -1.29 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.15 Total: -1.80 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.08 Total: -43.75 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.28 Total: -21.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.23 -8.13 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329065553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.750 kcal (2) G-P(sol) polarization free energy of solvation -37.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds