Wall clock time and date at job start Tue Mar 31 2020 20:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.53462 * 2 1 4 4 C 1.53003 * 109.47205 * 306.24830 * 3 2 1 5 5 H 1.08995 * 109.86974 * 52.57384 * 4 3 2 6 6 C 1.54323 * 109.87983 * 291.39827 * 4 3 2 7 7 C 1.55161 * 102.93877 * 218.38918 * 6 4 3 8 8 C 1.54694 * 101.67610 * 35.33490 * 7 6 4 9 9 N 1.47016 * 109.87905 * 173.58844 * 4 3 2 10 10 C 1.34781 * 125.65427 * 298.31887 * 9 4 3 11 11 O 1.21279 * 119.99587 * 355.18981 * 10 9 4 12 12 C 1.50699 * 120.00389 * 175.18878 * 10 9 4 13 13 C 1.52995 * 109.46905 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46938 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47358 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99811 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00362 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00326 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99600 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47354 * 90.00170 * 19 17 15 21 21 H 1.48511 * 109.46912 * 209.99736 * 19 17 15 22 22 H 1.48502 * 109.47402 * 329.99602 * 19 17 15 23 23 N 1.47313 * 110.73035 * 237.08027 * 2 1 3 24 24 C 1.34529 * 106.61505 * 241.40898 * 23 2 1 25 25 O 1.21543 * 123.76699 * 179.97438 * 24 23 2 26 26 N 1.33788 * 112.46146 * 0.02562 * 24 23 2 27 27 C 1.34772 * 111.64457 * 0.02562 * 26 24 23 28 28 O 1.21227 * 127.15652 * 179.97438 * 27 26 24 29 29 H 1.09003 * 109.46572 * 56.14782 * 1 2 3 30 30 H 1.09004 * 109.47241 * 176.14036 * 1 2 3 31 31 H 1.08990 * 109.47321 * 296.14459 * 1 2 3 32 32 H 1.09000 * 109.47185 * 186.24266 * 3 2 1 33 33 H 1.09003 * 109.46968 * 66.24615 * 3 2 1 34 34 H 1.08993 * 110.72161 * 336.75216 * 6 4 3 35 35 H 1.08994 * 110.71688 * 100.02781 * 6 4 3 36 36 H 1.08995 * 111.00186 * 153.57976 * 7 6 4 37 37 H 1.09005 * 111.00542 * 277.39068 * 7 6 4 38 38 H 1.09001 * 110.38646 * 204.36244 * 8 7 6 39 39 H 1.08998 * 110.23290 * 82.11876 * 8 7 6 40 40 H 1.08996 * 109.46691 * 300.00321 * 12 10 9 41 41 H 1.09005 * 109.46794 * 59.99991 * 12 10 9 42 42 H 1.08996 * 109.47803 * 299.99756 * 13 12 10 43 43 H 1.09005 * 109.47307 * 60.00421 * 13 12 10 44 44 H 1.09000 * 109.47604 * 300.00451 * 14 13 12 45 45 H 1.09001 * 109.46926 * 60.00561 * 14 13 12 46 46 H 0.96996 * 119.99989 * 179.97438 * 18 17 15 47 47 H 0.96992 * 126.69405 * 61.39368 * 23 2 1 48 48 H 0.97005 * 124.17898 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.4468 2.2096 -1.1633 5 1 0.3610 2.1210 -1.1312 6 6 1.9819 1.6629 -2.5036 7 6 2.1524 2.9462 -3.3590 8 6 2.5997 3.9751 -2.2940 9 7 1.8357 3.6251 -1.0828 10 6 1.5379 4.4653 -0.0719 11 8 0.8229 4.0940 0.8345 12 6 2.0935 5.8662 -0.0678 13 6 1.6060 6.6045 1.1803 14 6 2.1706 8.0266 1.1848 15 6 1.6909 8.7537 2.4145 16 1 1.0480 8.2517 3.1223 17 6 2.0727 10.0599 2.6360 18 7 1.6537 10.6946 3.7089 19 14 3.1841 10.9284 1.4113 20 1 2.3539 11.6067 0.3838 21 1 4.0123 11.9356 2.1222 22 1 4.0699 9.9338 0.7546 23 7 2.0514 -0.7488 -1.1565 24 6 2.7646 -1.7758 -0.6601 25 8 3.3357 -2.5975 -1.3498 26 7 2.7739 -1.7922 0.6777 27 6 2.0620 -0.7701 1.1923 28 8 1.8847 -0.5185 2.3649 29 1 -0.3632 0.5725 -0.8535 30 1 -0.3634 -1.0254 -0.0692 31 1 -0.3633 0.4528 0.9224 32 1 3.1508 1.4147 -0.1117 33 1 1.8065 1.9182 0.9406 34 1 2.9404 1.1640 -2.3615 35 1 1.2586 0.9879 -2.9610 36 1 2.9209 2.8093 -4.1197 37 1 1.2061 3.2427 -3.8116 38 1 2.3555 4.9870 -2.6175 39 1 3.6697 3.8835 -2.1074 40 1 3.1827 5.8249 -0.0639 41 1 1.7531 6.3946 -0.9584 42 1 0.5168 6.6457 1.1760 43 1 1.9460 6.0762 2.0711 44 1 3.2598 7.9851 1.1894 45 1 1.8308 8.5552 0.2941 46 1 1.9226 11.6134 3.8648 47 1 1.9083 -0.5418 -2.0932 48 1 3.2361 -2.4575 1.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329065553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:16 Heat of formation + Delta-G solvation = -117.137685 kcal Electronic energy + Delta-G solvation = -29948.733879 eV Core-core repulsion = 25809.889196 eV Total energy + Delta-G solvation = -4138.844684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.69434 -41.25068 -39.85173 -38.93435 -37.56279 -36.13999 -35.80511 -34.15418 -32.89121 -32.62564 -30.61475 -29.88083 -27.60572 -26.02369 -25.37972 -23.93792 -23.49144 -22.37493 -21.88869 -21.22758 -19.96215 -19.26885 -18.83534 -18.14751 -17.93268 -17.69238 -17.21171 -16.93998 -16.77919 -16.59247 -16.22871 -15.68559 -15.55889 -15.35271 -14.99351 -14.80925 -14.59073 -14.42981 -14.16575 -13.82634 -13.75475 -13.58289 -13.36013 -13.25558 -12.95496 -12.69190 -12.58829 -12.49056 -12.15548 -12.05325 -11.79134 -11.76500 -11.71371 -11.65081 -11.56722 -11.48552 -11.32336 -11.31902 -10.77833 -10.74752 -10.55700 -9.62167 -8.27319 -6.33075 0.41570 1.36197 1.38332 1.42213 1.54186 1.65121 1.87433 1.92097 2.06086 2.39354 2.79175 3.07702 3.34861 3.50848 3.54177 3.67712 3.91784 3.95501 4.13833 4.15965 4.17571 4.22592 4.30289 4.46104 4.58198 4.62820 4.67211 4.75272 4.83629 4.86422 4.89906 4.91979 4.97121 4.98431 5.03376 5.04270 5.15254 5.17200 5.37427 5.48049 5.56531 5.60159 5.68389 5.74188 5.79023 6.28584 6.30909 6.51140 6.75773 7.06464 7.21679 7.31354 8.90420 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.002419 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.313340 B =11570.402558 C =12437.344964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 C -0.121 4.121 4 C 0.131 3.869 5 H 0.085 0.915 6 C -0.134 4.134 7 C -0.122 4.122 8 C 0.085 3.915 9 N -0.617 5.617 10 C 0.524 3.476 11 O -0.578 6.578 12 C -0.127 4.127 13 C -0.080 4.080 14 C -0.008 4.008 15 C -0.540 4.540 16 H 0.019 0.981 17 C -0.004 4.004 18 N -0.957 5.957 19 Si 0.962 3.038 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.236 1.236 23 N -0.695 5.695 24 C 0.709 3.291 25 O -0.575 6.575 26 N -0.672 5.672 27 C 0.532 3.468 28 O -0.493 6.493 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.028 0.972 45 H 0.030 0.970 46 H 0.266 0.734 47 H 0.452 0.548 48 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 -25.654 -22.414 34.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.046 3.954 3 C -0.160 4.160 4 C 0.028 3.972 5 H 0.102 0.898 6 C -0.171 4.171 7 C -0.160 4.160 8 C -0.037 4.037 9 N -0.351 5.351 10 C 0.315 3.685 11 O -0.458 6.458 12 C -0.166 4.166 13 C -0.118 4.118 14 C -0.045 4.045 15 C -0.578 4.578 16 H 0.037 0.963 17 C -0.200 4.200 18 N -0.598 5.598 19 Si 0.784 3.216 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.159 1.159 23 N -0.364 5.364 24 C 0.408 3.592 25 O -0.452 6.452 26 N -0.343 5.343 27 C 0.317 3.683 28 O -0.363 6.363 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.302 0.698 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 2.872 -25.868 -21.561 33.798 hybrid contribution 0.278 0.534 0.836 1.030 sum 3.150 -25.334 -20.725 32.883 Atomic orbital electron populations 1.22123 0.88712 1.04739 1.05283 1.21240 0.98162 0.92483 0.83499 1.22067 1.01349 0.91322 1.01308 1.21801 0.99955 0.80263 0.95213 0.89764 1.23014 1.03127 0.98781 0.92214 1.22745 1.03702 0.92828 0.96679 1.22660 0.96391 1.01114 0.83495 1.48648 1.55325 1.10317 1.20809 1.20797 0.79653 0.87649 0.80433 1.90696 1.38995 1.78280 1.37784 1.21691 1.03013 0.91191 1.00706 1.21037 0.99335 0.95295 0.96135 1.19534 0.96628 0.93201 0.95164 1.21558 1.30350 0.98112 1.07755 0.96299 1.26210 0.97831 0.98239 0.97719 1.70108 1.47626 1.12443 1.29634 0.85492 0.79080 0.78417 0.78608 1.18757 1.21304 1.15864 1.45936 1.53454 1.27340 1.09664 1.15879 0.79539 0.82266 0.81500 1.91059 1.49988 1.42713 1.61398 1.44303 1.50697 1.30531 1.08762 1.20991 0.76833 0.80627 0.89801 1.90872 1.57542 1.69533 1.18354 0.87845 0.89824 0.91145 0.90106 0.91476 0.89102 0.87030 0.87181 0.89851 0.89311 0.90189 0.87217 0.86734 0.94383 0.94767 0.95327 0.95190 0.92516 0.69757 0.71711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.59 71.98 0.62 -1.07 16 2 C 0.14 1.80 1.01 2.98 0.00 1.80 16 3 C -0.12 -2.02 4.21 30.60 0.13 -1.89 16 4 C 0.13 1.75 2.58 45.34 0.12 1.86 16 5 H 0.08 1.19 5.94 -2.39 -0.01 1.18 16 6 C -0.13 -0.58 4.53 31.78 0.14 -0.43 16 7 C -0.12 -0.49 7.07 31.91 0.23 -0.27 16 8 C 0.08 0.85 6.64 86.78 0.58 1.43 16 9 N -0.62 -11.28 3.07 -788.50 -2.42 -13.70 16 10 C 0.52 14.98 7.56 87.66 0.66 15.65 16 11 O -0.58 -22.00 15.14 -3.03 -0.05 -22.05 16 12 C -0.13 -3.57 4.79 29.85 0.14 -3.43 16 13 C -0.08 -3.31 4.44 30.59 0.14 -3.18 16 14 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 15 C -0.54 -32.52 9.66 25.60 0.25 -32.27 16 16 H 0.02 1.28 7.99 -2.91 -0.02 1.26 16 17 C 0.00 -0.25 5.47 84.65 0.46 0.21 16 18 N -0.96 -62.00 13.96 21.44 0.30 -61.70 16 19 Si 0.96 43.75 27.47 68.60 1.88 45.64 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 23 N -0.70 -6.12 4.90 -439.81 -2.16 -8.28 16 24 C 0.71 10.32 8.99 179.44 1.61 11.93 16 25 O -0.58 -12.18 18.04 -3.85 -0.07 -12.25 16 26 N -0.67 -9.33 5.70 -441.12 -2.52 -11.84 16 27 C 0.53 9.62 7.48 87.94 0.66 10.27 16 28 O -0.49 -12.98 18.02 -2.86 -0.05 -13.03 16 29 H 0.10 0.76 6.06 -2.39 -0.01 0.74 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.28 7.99 -2.39 -0.02 1.26 16 33 H 0.07 1.74 6.85 -2.39 -0.02 1.73 16 34 H 0.09 0.33 6.90 -2.39 -0.02 0.31 16 35 H 0.11 -0.11 7.20 -2.39 -0.02 -0.12 16 36 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.09 0.81 7.51 -2.39 -0.02 0.79 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.11 2.61 7.76 -2.38 -0.02 2.59 16 42 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 43 H 0.03 1.56 8.10 -2.38 -0.02 1.54 16 44 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 45 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 46 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 47 H 0.45 1.66 5.96 -92.71 -0.55 1.10 16 48 H 0.44 4.67 8.96 -92.70 -0.83 3.84 16 Total: -1.00 -87.85 381.39 0.35 -87.50 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -0.44 Total: 9.34 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.86 Total: 0.37 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -6.79 Total: -95.52 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.17 Total: -47.33 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -87.85 0.35 -87.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329065553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.638 kcal (2) G-P(sol) polarization free energy of solvation -87.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds