Wall clock time and date at job start Tue Mar 31 2020 20:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34177 * 127.02383 * 2 1 4 4 O 1.34214 * 109.12766 * 179.97438 * 3 2 1 5 5 C 1.33658 * 110.90786 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.80554 * 180.02562 * 5 4 3 7 7 C 1.36424 * 108.39267 * 359.71307 * 5 4 3 8 8 C 1.47376 * 127.19136 * 180.30528 * 7 5 4 9 9 O 1.21609 * 120.00068 * 270.14626 * 8 7 5 10 10 N 1.34776 * 120.00249 * 90.14897 * 8 7 5 11 11 C 1.46504 * 119.99727 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00400 * 180.02562 * 10 8 7 13 13 C 1.52992 * 109.47280 * 84.41437 * 12 10 8 14 14 H 1.09005 * 109.47848 * 296.58850 * 13 12 10 15 15 C 1.52999 * 109.47367 * 176.58394 * 13 12 10 16 16 N 1.46903 * 109.47118 * 56.58656 * 13 12 10 17 17 C 1.46901 * 111.00273 * 200.20296 * 16 13 12 18 18 C 1.50703 * 109.47103 * 179.97438 * 17 16 13 19 19 O 1.21292 * 119.99926 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99637 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99606 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00115 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99611 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00207 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99701 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47450 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47085 * 120.00051 * 25 23 21 28 28 H 1.48498 * 109.47258 * 239.99761 * 25 23 21 29 29 H 1.09000 * 109.46818 * 90.01939 * 1 2 3 30 30 H 1.08999 * 109.47351 * 330.02917 * 1 2 3 31 31 H 1.08993 * 109.47538 * 210.02404 * 1 2 3 32 32 H 1.08003 * 125.43759 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.46846 * 359.97438 * 6 5 4 34 34 H 1.09001 * 109.47140 * 119.97557 * 6 5 4 35 35 H 1.08993 * 109.47585 * 239.97243 * 6 5 4 36 36 H 1.09004 * 109.47221 * 84.63572 * 11 10 8 37 37 H 1.09006 * 109.46953 * 204.63544 * 11 10 8 38 38 H 1.09003 * 109.47135 * 324.63346 * 11 10 8 39 39 H 1.08993 * 109.46958 * 204.41979 * 12 10 8 40 40 H 1.09006 * 109.46587 * 324.41535 * 12 10 8 41 41 H 1.08998 * 109.47223 * 300.00316 * 15 13 12 42 42 H 1.09005 * 109.46867 * 60.00088 * 15 13 12 43 43 H 1.08997 * 109.47755 * 180.02562 * 15 13 12 44 44 H 1.00898 * 111.00015 * 324.16380 * 16 13 12 45 45 H 1.08999 * 109.47266 * 300.00412 * 17 16 13 46 46 H 1.08998 * 109.46474 * 60.00410 * 17 16 13 47 47 H 0.97000 * 120.00224 * 0.02562 * 20 18 17 48 48 H 0.97007 * 119.99710 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6588 0.0006 5 6 3.6624 -0.6759 0.0004 6 6 4.9291 -1.4921 0.0014 7 6 2.3922 -1.1738 0.0062 8 6 1.9913 -2.5919 0.0144 9 8 1.8258 -3.1831 -1.0354 10 7 1.8080 -3.2337 1.1853 11 6 2.0079 -2.5216 2.4499 12 6 1.4100 -4.6436 1.1935 13 6 2.6531 -5.5252 1.0584 14 1 3.1271 -5.3400 0.0945 15 6 2.2470 -6.9973 1.1525 16 7 3.5979 -5.2081 2.1377 17 6 4.9561 -5.6510 1.7954 18 6 5.8952 -5.3089 2.9233 19 8 5.4744 -4.7514 3.9149 20 7 7.2027 -5.6224 2.8300 21 6 8.0570 -5.3116 3.8564 22 1 7.6821 -4.8160 4.7397 23 6 9.4050 -5.6343 3.7600 24 7 9.8610 -6.2378 2.6854 25 14 10.5691 -5.2103 5.1580 26 1 9.8128 -4.5395 6.2458 27 1 11.1887 -6.4545 5.6810 28 1 11.6313 -4.3004 4.6590 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3634 0.8902 0.5134 31 1 -0.3634 -0.8897 0.5142 32 1 1.9895 2.1011 0.0004 33 1 5.7911 -0.8250 0.0019 34 1 4.9556 -2.1207 0.8916 35 1 4.9569 -2.1210 -0.8883 36 1 1.0957 -1.9865 2.7138 37 1 2.2494 -3.2375 3.2357 38 1 2.8274 -1.8112 2.3413 39 1 0.9023 -4.8723 2.1305 40 1 0.7359 -4.8356 0.3587 41 1 1.7730 -7.1827 2.1164 42 1 1.5459 -7.2327 0.3517 43 1 3.1325 -7.6255 1.0567 44 1 3.5826 -4.2227 2.3538 45 1 4.9573 -6.7292 1.6355 46 1 5.2835 -5.1483 0.8853 47 1 7.5393 -6.0678 2.0368 48 1 10.8023 -6.4628 2.6181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331441606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:51 Heat of formation + Delta-G solvation = -56.374478 kcal Electronic energy + Delta-G solvation = -30263.321803 eV Core-core repulsion = 26127.112010 eV Total energy + Delta-G solvation = -4136.209793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.73675 -39.94962 -38.33046 -36.84548 -34.85114 -34.08542 -33.84998 -32.66863 -31.33698 -30.89817 -28.50262 -27.44997 -26.93672 -26.52958 -25.71970 -24.01398 -22.60371 -20.59599 -20.04091 -19.31277 -19.06617 -17.90755 -17.64464 -16.79816 -16.45822 -16.15302 -15.89498 -15.50572 -15.21020 -14.71252 -14.45683 -14.33974 -13.85269 -13.82120 -13.51113 -13.49045 -13.34599 -13.10495 -12.92923 -12.89109 -12.73937 -12.66435 -12.53537 -12.39977 -11.90986 -11.85722 -11.68295 -11.61033 -11.50836 -11.38297 -11.12067 -10.83458 -10.35902 -10.23946 -10.16321 -9.55805 -9.53459 -8.81903 -8.62707 -8.44791 -8.07318 -7.97230 -6.43103 -3.84022 1.46680 2.02389 2.38836 2.67243 2.97856 3.14962 3.25799 3.32644 3.89188 4.08598 4.25731 4.31969 4.44743 4.69257 4.85933 4.90499 5.02996 5.10554 5.12196 5.22218 5.24859 5.31543 5.35099 5.36584 5.40034 5.42926 5.53773 5.57951 5.60236 5.69989 5.70499 5.73477 5.80194 5.86145 6.00965 6.01545 6.06743 6.17294 6.22463 6.29024 6.46223 6.90012 7.15266 7.26859 7.53840 7.68125 8.01872 8.05065 8.59596 9.16355 9.52982 10.03996 10.74603 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003151 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.665986 B = 8883.320615 C =10319.062313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.149 4.149 3 C -0.041 4.041 4 O -0.171 6.171 5 C 0.051 3.949 6 C -0.086 4.086 7 C -0.230 4.230 8 C 0.595 3.405 9 O -0.531 6.531 10 N -0.608 5.608 11 C 0.073 3.927 12 C 0.117 3.883 13 C 0.064 3.936 14 H 0.046 0.954 15 C -0.138 4.138 16 N -0.663 5.663 17 C 0.049 3.951 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.206 0.794 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.346 0.654 45 H 0.086 0.914 46 H 0.040 0.960 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.122 9.915 -6.614 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.151 4.151 3 C -0.108 4.108 4 O -0.067 6.067 5 C 0.000 4.000 6 C -0.142 4.142 7 C -0.234 4.234 8 C 0.382 3.618 9 O -0.408 6.408 10 N -0.341 5.341 11 C -0.070 4.070 12 C -0.005 4.005 13 C -0.047 4.047 14 H 0.064 0.936 15 C -0.196 4.196 16 N -0.299 5.299 17 C -0.084 4.084 18 C 0.227 3.773 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.222 0.778 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.168 0.832 45 H 0.105 0.895 46 H 0.058 0.942 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.210 9.543 -6.165 20.622 hybrid contribution 1.045 0.537 -0.471 1.266 sum -16.165 10.080 -6.636 20.173 Atomic orbital electron populations 1.20161 0.88735 1.02656 1.02421 1.21282 0.96672 0.90494 1.06665 1.23595 0.79724 0.99461 1.07972 1.83752 1.29489 1.21918 1.71559 1.22591 0.96053 0.80711 1.00690 1.20514 0.91174 0.98014 1.04508 1.20890 0.93215 0.93838 1.15475 1.17372 0.76337 0.84775 0.83329 1.90789 1.50636 1.67889 1.31462 1.47877 1.68314 1.11635 1.06318 1.21954 1.01665 0.98015 0.85322 1.21744 0.96579 0.78516 1.03678 1.21930 0.93267 0.95859 0.93627 0.93604 1.21730 1.01473 0.94527 1.01859 1.60281 1.05352 1.24483 1.39768 1.21723 0.88938 1.01487 0.96215 1.19801 0.83099 0.85326 0.89080 1.90506 1.76552 1.46853 1.32949 1.41878 1.06102 1.52675 1.19325 1.19742 0.88511 1.36137 0.98433 0.87874 1.25262 0.97713 0.96963 0.97998 1.69623 1.15876 1.41123 1.27590 0.85816 0.79762 0.78149 0.80714 1.19214 1.20746 1.20768 0.91132 0.91161 0.91610 0.77754 0.89456 0.88937 0.89044 0.92387 0.89068 0.91141 0.89159 0.89541 0.91732 0.92606 0.92232 0.83179 0.89535 0.94221 0.77478 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.38 36.01 0.37 -0.32 16 2 C -0.15 -1.61 6.38 -102.50 -0.65 -2.27 16 3 C -0.04 -0.39 11.96 29.30 0.35 -0.04 16 4 O -0.17 -2.03 10.52 7.64 0.08 -1.95 16 5 C 0.05 0.65 7.07 -34.97 -0.25 0.41 16 6 C -0.09 -1.02 10.17 36.00 0.37 -0.65 16 7 C -0.23 -3.01 4.39 -103.28 -0.45 -3.46 16 8 C 0.59 8.50 7.23 -12.54 -0.09 8.41 16 9 O -0.53 -9.22 16.78 5.27 0.09 -9.13 16 10 N -0.61 -7.49 2.47 -182.86 -0.45 -7.94 16 11 C 0.07 0.80 8.88 59.85 0.53 1.33 16 12 C 0.12 1.38 5.01 -4.05 -0.02 1.36 16 13 C 0.06 0.86 2.89 -67.72 -0.20 0.67 16 14 H 0.05 0.69 7.88 -51.93 -0.41 0.28 16 15 C -0.14 -1.62 9.36 37.16 0.35 -1.27 16 16 N -0.66 -10.69 5.92 -107.99 -0.64 -11.33 16 17 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 18 C 0.44 10.25 7.82 -10.98 -0.09 10.16 16 19 O -0.58 -15.36 15.78 5.55 0.09 -15.28 16 20 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 21 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 25 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.21 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.05 6.95 -51.93 -0.36 0.69 16 38 H 0.07 0.81 6.86 -51.93 -0.36 0.45 16 39 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 40 H 0.09 1.01 7.59 -51.93 -0.39 0.61 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.74 7.17 -51.93 -0.37 0.37 16 44 H 0.35 5.68 4.95 -39.29 -0.19 5.49 16 45 H 0.09 1.46 7.13 -51.93 -0.37 1.09 16 46 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 402.72 15.07 6.07 6.07 Total: -1.00 -33.43 402.72 -6.52 -39.95 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -7.35 Total: 14.26 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -0.05 Total: 7.30 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.42 Total: -57.04 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: 0.26 Total: -26.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.43 -6.52 -39.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331441606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.423 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds