Wall clock time and date at job start Tue Mar 31 2020 20:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34177 * 127.02383 * 2 1 4 4 O 1.34214 * 109.12766 * 179.97438 * 3 2 1 5 5 C 1.33658 * 110.90786 * 0.02562 * 4 3 2 6 6 C 1.50693 * 125.80554 * 180.02562 * 5 4 3 7 7 C 1.36424 * 108.39267 * 359.71307 * 5 4 3 8 8 C 1.47376 * 127.19136 * 180.30528 * 7 5 4 9 9 O 1.21609 * 120.00068 * 270.14626 * 8 7 5 10 10 N 1.34776 * 120.00249 * 90.14897 * 8 7 5 11 11 C 1.46504 * 119.99727 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00400 * 180.02562 * 10 8 7 13 13 C 1.52992 * 109.47280 * 84.41437 * 12 10 8 14 14 H 1.09005 * 109.47848 * 296.58850 * 13 12 10 15 15 C 1.52999 * 109.47367 * 176.58394 * 13 12 10 16 16 N 1.46903 * 109.47118 * 56.58656 * 13 12 10 17 17 C 1.46901 * 111.00273 * 200.20296 * 16 13 12 18 18 C 1.50703 * 109.47103 * 179.97438 * 17 16 13 19 19 O 1.21292 * 119.99926 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99637 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99606 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00115 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99611 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00207 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99701 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47450 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47085 * 120.00051 * 25 23 21 28 28 H 1.48498 * 109.47258 * 239.99761 * 25 23 21 29 29 H 1.09000 * 109.46818 * 90.01939 * 1 2 3 30 30 H 1.08999 * 109.47351 * 330.02917 * 1 2 3 31 31 H 1.08993 * 109.47538 * 210.02404 * 1 2 3 32 32 H 1.08003 * 125.43759 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.46846 * 359.97438 * 6 5 4 34 34 H 1.09001 * 109.47140 * 119.97557 * 6 5 4 35 35 H 1.08993 * 109.47585 * 239.97243 * 6 5 4 36 36 H 1.09004 * 109.47221 * 84.63572 * 11 10 8 37 37 H 1.09006 * 109.46953 * 204.63544 * 11 10 8 38 38 H 1.09003 * 109.47135 * 324.63346 * 11 10 8 39 39 H 1.08993 * 109.46958 * 204.41979 * 12 10 8 40 40 H 1.09006 * 109.46587 * 324.41535 * 12 10 8 41 41 H 1.08998 * 109.47223 * 300.00316 * 15 13 12 42 42 H 1.09005 * 109.46867 * 60.00088 * 15 13 12 43 43 H 1.08997 * 109.47755 * 180.02562 * 15 13 12 44 44 H 1.00898 * 111.00015 * 324.16380 * 16 13 12 45 45 H 1.08999 * 109.47266 * 300.00412 * 17 16 13 46 46 H 1.08998 * 109.46474 * 60.00410 * 17 16 13 47 47 H 0.97000 * 120.00224 * 0.02562 * 20 18 17 48 48 H 0.97007 * 119.99710 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6588 0.0006 5 6 3.6624 -0.6759 0.0004 6 6 4.9291 -1.4921 0.0014 7 6 2.3922 -1.1738 0.0062 8 6 1.9913 -2.5919 0.0144 9 8 1.8258 -3.1831 -1.0354 10 7 1.8080 -3.2337 1.1853 11 6 2.0079 -2.5216 2.4499 12 6 1.4100 -4.6436 1.1935 13 6 2.6531 -5.5252 1.0584 14 1 3.1271 -5.3400 0.0945 15 6 2.2470 -6.9973 1.1525 16 7 3.5979 -5.2081 2.1377 17 6 4.9561 -5.6510 1.7954 18 6 5.8952 -5.3089 2.9233 19 8 5.4744 -4.7514 3.9149 20 7 7.2027 -5.6224 2.8300 21 6 8.0570 -5.3116 3.8564 22 1 7.6821 -4.8160 4.7397 23 6 9.4050 -5.6343 3.7600 24 7 9.8610 -6.2378 2.6854 25 14 10.5691 -5.2103 5.1580 26 1 9.8128 -4.5395 6.2458 27 1 11.1887 -6.4545 5.6810 28 1 11.6313 -4.3004 4.6590 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3634 0.8902 0.5134 31 1 -0.3634 -0.8897 0.5142 32 1 1.9895 2.1011 0.0004 33 1 5.7911 -0.8250 0.0019 34 1 4.9556 -2.1207 0.8916 35 1 4.9569 -2.1210 -0.8883 36 1 1.0957 -1.9865 2.7138 37 1 2.2494 -3.2375 3.2357 38 1 2.8274 -1.8112 2.3413 39 1 0.9023 -4.8723 2.1305 40 1 0.7359 -4.8356 0.3587 41 1 1.7730 -7.1827 2.1164 42 1 1.5459 -7.2327 0.3517 43 1 3.1325 -7.6255 1.0567 44 1 3.5826 -4.2227 2.3538 45 1 4.9573 -6.7292 1.6355 46 1 5.2835 -5.1483 0.8853 47 1 7.5393 -6.0678 2.0368 48 1 10.8023 -6.4628 2.6181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331441606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:50 Heat of formation + Delta-G solvation = -79.319187 kcal Electronic energy + Delta-G solvation = -30264.316761 eV Core-core repulsion = 26127.112010 eV Total energy + Delta-G solvation = -4137.204751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.60626 -41.05057 -40.12489 -38.12707 -36.13107 -35.77205 -34.87245 -33.59935 -33.27691 -32.21529 -29.35410 -28.40022 -28.19905 -27.65874 -26.84508 -25.73170 -23.61035 -21.68232 -21.12076 -20.87433 -20.08406 -19.90523 -18.59959 -17.99975 -17.71968 -17.25163 -17.02533 -16.87123 -16.42948 -16.34397 -16.01285 -15.58595 -15.28321 -15.15853 -14.55305 -14.44001 -14.29198 -14.23749 -13.94155 -13.92100 -13.82795 -13.65093 -13.58173 -13.47076 -13.35309 -13.32254 -12.91110 -12.83553 -12.73769 -12.58783 -12.38940 -12.33126 -12.10488 -11.98536 -11.51018 -11.27971 -10.44819 -10.35667 -10.01701 -9.83010 -9.47785 -9.42536 -8.46426 -5.95149 0.55798 1.20659 1.30685 1.36750 1.42533 1.56539 1.79424 2.03102 2.04567 2.28742 2.86768 3.20719 3.41659 3.47570 3.52271 3.85512 3.90294 4.08505 4.12923 4.21738 4.22683 4.30750 4.36632 4.36965 4.39488 4.49829 4.52433 4.56031 4.61429 4.67113 4.74627 4.76416 4.82412 4.93176 4.95581 4.98004 5.03063 5.10550 5.28351 5.41641 5.45106 5.47879 5.85251 6.03641 6.05855 6.16591 6.37262 6.59048 6.94372 7.12235 7.55190 8.09351 8.71192 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003151 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.665986 B = 8883.320615 C =10319.062313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.166 4.166 3 C -0.028 4.028 4 O -0.179 6.179 5 C 0.034 3.966 6 C -0.083 4.083 7 C -0.247 4.247 8 C 0.594 3.406 9 O -0.570 6.570 10 N -0.603 5.603 11 C 0.077 3.923 12 C 0.118 3.882 13 C 0.068 3.932 14 H 0.029 0.971 15 C -0.133 4.133 16 N -0.668 5.668 17 C 0.062 3.938 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.572 5.572 21 C -0.330 4.330 22 H 0.081 0.919 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.249 0.751 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.343 0.657 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.034 10.833 -6.369 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.168 4.168 3 C -0.094 4.094 4 O -0.075 6.075 5 C -0.017 4.017 6 C -0.139 4.139 7 C -0.251 4.251 8 C 0.382 3.618 9 O -0.450 6.450 10 N -0.335 5.335 11 C -0.066 4.066 12 C -0.004 4.004 13 C -0.043 4.043 14 H 0.047 0.953 15 C -0.192 4.192 16 N -0.303 5.303 17 C -0.070 4.070 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.209 5.209 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.264 0.736 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.165 0.835 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.133 10.447 -5.919 21.748 hybrid contribution 1.262 0.281 -0.555 1.407 sum -16.870 10.728 -6.474 21.015 Atomic orbital electron populations 1.20205 0.87047 1.03627 1.02727 1.21632 0.97927 0.89816 1.07427 1.24446 0.78471 1.00980 1.05474 1.83755 1.30890 1.21318 1.71584 1.22606 0.96048 0.81303 1.01787 1.20438 0.91812 0.98059 1.03581 1.21049 0.94164 0.93911 1.16010 1.17596 0.75721 0.85266 0.83192 1.90758 1.52658 1.68797 1.32750 1.47929 1.67324 1.11884 1.06315 1.21984 1.02534 0.97720 0.84342 1.21812 0.95837 0.77862 1.04882 1.21988 0.93080 0.97445 0.91775 0.95283 1.21713 1.01646 0.92870 1.02937 1.60340 1.04645 1.24324 1.40969 1.21572 0.88795 1.02500 0.94182 1.20652 0.83039 0.83642 0.89731 1.90476 1.77100 1.47966 1.34722 1.41936 1.06687 1.53246 1.19060 1.19706 0.89713 1.37722 0.98817 0.90062 1.26042 0.98596 0.96334 1.00315 1.69687 1.16550 1.41192 1.28785 0.84879 0.77627 0.78224 0.77674 1.19564 1.19787 1.19651 0.91121 0.88354 0.92457 0.73551 0.88334 0.90367 0.89433 0.90049 0.89613 0.91977 0.87151 0.89152 0.91269 0.90583 0.92964 0.83541 0.88022 0.93044 0.77166 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.38 71.24 0.74 -0.42 16 2 C -0.17 -3.34 6.38 -18.49 -0.12 -3.46 16 3 C -0.03 -0.48 11.96 66.89 0.80 0.32 16 4 O -0.18 -4.07 10.52 4.43 0.05 -4.02 16 5 C 0.03 0.88 7.07 25.26 0.18 1.06 16 6 C -0.08 -2.04 10.17 71.23 0.72 -1.31 16 7 C -0.25 -6.43 4.39 -18.99 -0.08 -6.51 16 8 C 0.59 17.08 7.23 86.65 0.63 17.70 16 9 O -0.57 -20.13 16.78 -4.06 -0.07 -20.20 16 10 N -0.60 -14.59 2.47 -850.71 -2.10 -16.69 16 11 C 0.08 1.62 8.88 127.77 1.14 2.76 16 12 C 0.12 2.65 5.01 86.38 0.43 3.09 16 13 C 0.07 1.76 2.89 44.91 0.13 1.89 16 14 H 0.03 0.87 7.88 -2.38 -0.02 0.85 16 15 C -0.13 -2.94 9.36 71.98 0.67 -2.26 16 16 N -0.67 -21.30 5.92 -495.57 -2.93 -24.24 16 17 C 0.06 2.22 5.97 85.56 0.51 2.74 16 18 C 0.44 20.86 7.82 87.66 0.69 21.55 16 19 O -0.62 -33.10 15.78 -3.07 -0.05 -33.15 16 20 N -0.57 -29.23 5.29 -306.98 -1.62 -30.85 16 21 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 25 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.25 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.94 6.95 -2.38 -0.02 1.92 16 38 H 0.06 1.44 6.86 -2.39 -0.02 1.42 16 39 H 0.11 2.04 8.03 -2.39 -0.02 2.02 16 40 H 0.09 2.01 7.59 -2.38 -0.02 1.99 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.05 1.22 7.17 -2.39 -0.02 1.21 16 44 H 0.34 11.31 4.95 -89.70 -0.44 10.87 16 45 H 0.10 3.36 7.13 -2.39 -0.02 3.35 16 46 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 47 H 0.39 19.41 7.90 -92.71 -0.73 18.67 16 48 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 Total: -1.00 -72.85 402.72 3.11 -69.74 By element: Atomic # 1 Polarization: 45.18 SS G_CDS: -0.19 Total: 44.99 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 7.72 Total: 19.19 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -6.38 Total: -121.12 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -0.07 Total: -57.37 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -72.85 3.11 -69.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331441606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.580 kcal (2) G-P(sol) polarization free energy of solvation -72.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds