Wall clock time and date at job start Tue Mar 31 2020 19:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34330 * 126.44161 * 2 1 4 4 N 1.34476 * 107.66694 * 180.02562 * 3 2 1 5 5 C 1.30252 * 108.70204 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.61895 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47019 * 89.97458 * 6 5 4 8 8 C 1.42906 * 113.99953 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47185 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00425 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99968 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00151 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.02099 * 33.60617 * 12 11 9 14 14 C 1.54266 * 110.03329 * 272.16579 * 12 11 9 15 15 C 1.54896 * 104.19495 * 217.10601 * 14 12 11 16 16 C 1.54883 * 102.74869 * 37.93785 * 15 14 12 17 17 H 1.09005 * 110.48442 * 80.73913 * 16 15 14 18 18 C 1.53001 * 110.59826 * 203.32389 * 16 15 14 19 19 N 1.46502 * 109.47209 * 289.84188 * 18 16 15 20 20 C 1.36938 * 120.00054 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00079 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99729 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99653 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 119.99981 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47196 * 90.00106 * 24 22 20 26 26 H 1.48506 * 109.46888 * 209.99994 * 24 22 20 27 27 H 1.48496 * 109.47649 * 329.99883 * 24 22 20 28 28 C 1.53875 * 110.03646 * 154.99365 * 12 11 9 29 29 O 1.33968 * 108.76339 * 359.73269 * 5 4 3 30 30 H 1.09002 * 109.47152 * 90.00157 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.00258 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.00238 * 1 2 3 33 33 H 1.07997 * 126.17039 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.46613 * 209.97563 * 6 5 4 35 35 H 1.08994 * 109.46982 * 329.97564 * 6 5 4 36 36 H 1.08992 * 109.47106 * 300.00770 * 8 7 6 37 37 H 1.09004 * 109.46442 * 60.00523 * 8 7 6 38 38 H 0.97000 * 119.99609 * 359.97438 * 11 9 8 39 39 H 1.09001 * 110.48125 * 335.77801 * 14 12 11 40 40 H 1.09000 * 110.49026 * 98.42529 * 14 12 11 41 41 H 1.08996 * 110.75355 * 279.62095 * 15 14 12 42 42 H 1.09000 * 110.91388 * 156.32573 * 15 14 12 43 43 H 1.08999 * 109.47124 * 49.84211 * 18 16 15 44 44 H 1.09006 * 109.47063 * 169.84677 * 18 16 15 45 45 H 0.97002 * 119.99481 * 0.02562 * 19 18 16 46 46 H 0.96998 * 119.99754 * 179.97438 * 23 22 20 47 47 H 1.08992 * 110.03615 * 238.56789 * 28 12 11 48 48 H 1.09005 * 110.02867 * 359.95236 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 -0.0006 5 6 3.5765 -0.6547 -0.0004 6 6 4.8005 -1.5340 -0.0003 7 8 5.1878 -1.8111 1.3470 8 6 6.3445 -2.6427 1.4599 9 6 6.6609 -2.8681 2.9159 10 8 5.9643 -2.3665 3.7726 11 7 7.7182 -3.6271 3.2661 12 6 8.0255 -3.8467 4.6815 13 1 7.1038 -3.8822 5.2624 14 6 8.9382 -2.7187 5.2053 15 6 9.9024 -3.4339 6.1842 16 6 10.1684 -4.7853 5.4756 17 1 10.9235 -4.6663 4.6985 18 6 10.6057 -5.8465 6.4873 19 7 11.9507 -5.5314 6.9751 20 6 12.5536 -6.3465 7.8955 21 1 12.0378 -7.2220 8.2616 22 6 13.8283 -6.0482 8.3573 23 7 14.4080 -6.8319 9.2417 24 14 14.7207 -4.5344 7.7237 25 1 14.4035 -3.3728 8.5927 26 1 16.1852 -4.7800 7.7405 27 1 14.2830 -4.2471 6.3341 28 6 8.8076 -5.1607 4.8535 29 8 2.3075 -1.0840 0.0063 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3633 -0.8900 0.5139 33 1 1.9822 2.1113 -0.0004 34 1 4.5761 -2.4690 -0.5136 35 1 5.6146 -1.0234 -0.5146 36 1 6.1518 -3.6006 0.9770 37 1 7.1908 -2.1554 0.9757 38 1 8.2751 -4.0286 2.5809 39 1 9.4946 -2.2662 4.3844 40 1 8.3509 -1.9655 5.7304 41 1 9.4241 -3.5921 7.1507 42 1 10.8278 -2.8699 6.3004 43 1 9.9088 -5.8586 7.3253 44 1 10.6135 -6.8250 6.0069 45 1 12.4138 -4.7449 6.6466 46 1 15.2988 -6.6237 9.5641 47 1 8.2660 -5.8333 5.5184 48 1 8.9578 -5.6354 3.8838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332277777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:38 Heat of formation + Delta-G solvation = -47.991492 kcal Electronic energy + Delta-G solvation = -27686.555505 eV Core-core repulsion = 23550.709226 eV Total energy + Delta-G solvation = -4135.846280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.78656 -40.27293 -38.66856 -37.69089 -35.19064 -34.99839 -33.52394 -33.24582 -31.38175 -30.29677 -29.08936 -28.66263 -27.00403 -25.58915 -24.39779 -22.79200 -21.88614 -21.58998 -21.13503 -20.44681 -19.87602 -18.11994 -17.70926 -17.52535 -17.14934 -16.82174 -16.72170 -16.10936 -15.33766 -15.16370 -14.88375 -14.73726 -14.42270 -14.15085 -14.00793 -13.65849 -13.64635 -13.40173 -13.26468 -12.95723 -12.78785 -12.61714 -12.51400 -12.38288 -11.90406 -11.76440 -11.67089 -11.28104 -10.99289 -10.94563 -10.80566 -10.59417 -10.41832 -10.38953 -10.37111 -10.04734 -10.00324 -9.57940 -9.22043 -9.20783 -8.87840 -7.20992 -5.75787 -3.10760 0.83167 1.91570 2.19506 2.35712 2.64161 3.36202 3.37421 3.40317 3.45572 3.85687 4.20018 4.32224 4.45123 4.48827 4.56312 4.59100 4.60217 4.61434 4.66971 4.71062 4.83439 4.90256 4.93161 5.04037 5.35870 5.36041 5.45674 5.49497 5.52093 5.56052 5.57651 5.75086 5.78678 5.80636 5.90822 5.98077 6.06171 6.17642 6.26078 6.37681 6.42796 6.49148 6.69513 6.82128 7.24807 7.25073 7.98804 8.01157 8.43579 9.23162 9.95600 10.15781 11.42836 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.037196 B = 0.001483 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.590991 B =18881.045833 C =19093.028784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.038 4.038 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.186 3.814 6 C 0.162 3.838 7 O -0.357 6.357 8 C 0.045 3.955 9 C 0.512 3.488 10 O -0.517 6.517 11 N -0.721 5.721 12 C 0.142 3.858 13 H 0.092 0.908 14 C -0.134 4.134 15 C -0.115 4.115 16 C -0.101 4.101 17 H 0.074 0.926 18 C 0.164 3.836 19 N -0.755 5.755 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.121 4.121 29 O -0.194 6.194 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.187 0.813 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.400 0.600 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.025 0.975 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.079 0.921 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.887 12.125 -25.426 38.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.021 4.021 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.035 4.035 9 C 0.297 3.703 10 O -0.391 6.391 11 N -0.375 5.375 12 C 0.038 3.962 13 H 0.110 0.890 14 C -0.173 4.173 15 C -0.152 4.152 16 C -0.120 4.120 17 H 0.093 0.907 18 C 0.037 3.963 19 N -0.401 5.401 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.160 4.160 29 O -0.081 6.081 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.204 0.796 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.235 0.765 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.933 12.659 -24.463 37.831 hybrid contribution 0.608 0.444 -0.911 1.182 sum -25.325 13.103 -25.374 38.169 Atomic orbital electron populations 1.20328 0.83655 1.04765 1.03943 1.23604 0.95225 0.84485 1.05788 1.23142 0.87538 1.00587 1.07134 1.70412 1.23378 1.09035 1.15964 1.25486 0.83887 0.89940 1.02775 1.20480 0.89152 0.96497 0.85446 1.88083 1.45547 1.69735 1.24041 1.22282 0.89613 0.96067 0.95549 1.20120 0.80898 0.79098 0.90215 1.90763 1.49002 1.47739 1.51613 1.46120 1.30048 1.52281 1.09001 1.21739 0.98992 0.95119 0.80309 0.88995 1.22792 0.97510 0.97574 0.99378 1.22507 0.98952 0.95454 0.98336 1.22208 0.95758 0.95893 0.98160 0.90730 1.20678 0.87168 0.94675 0.93784 1.42699 1.15080 1.30538 1.51778 1.19079 0.98214 1.05398 1.14647 0.89266 1.24670 0.97120 0.98400 0.99011 1.69705 1.15604 1.38970 1.34051 0.86545 0.79410 0.83988 0.78568 1.21059 1.21763 1.20405 1.22420 0.96193 0.95858 1.01509 1.84388 1.17686 1.36641 1.69357 0.89575 0.88682 0.90065 0.79637 0.89810 0.88322 0.89606 0.89500 0.76512 0.91452 0.91309 0.90783 0.91331 0.95364 0.95687 0.80696 0.93097 0.90201 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.01 0.38 0.13 16 2 C -0.04 -0.30 7.39 -35.69 -0.26 -0.56 16 3 C -0.04 -0.39 11.80 -17.77 -0.21 -0.60 16 4 N -0.46 -5.18 11.29 -11.10 -0.13 -5.31 16 5 C 0.19 1.90 7.97 -12.94 -0.10 1.79 16 6 C 0.16 1.14 6.56 36.01 0.24 1.38 16 7 O -0.36 -3.70 9.86 -55.14 -0.54 -4.24 16 8 C 0.04 0.31 6.42 36.00 0.23 0.54 16 9 C 0.51 5.56 7.90 -10.99 -0.09 5.48 16 10 O -0.52 -8.35 16.15 -14.35 -0.23 -8.58 16 11 N -0.72 -6.34 5.04 -52.72 -0.27 -6.61 16 12 C 0.14 1.57 3.25 -66.82 -0.22 1.35 16 13 H 0.09 1.17 7.57 -51.93 -0.39 0.77 16 14 C -0.13 -1.61 6.53 -25.07 -0.16 -1.78 16 15 C -0.11 -1.60 6.20 -24.74 -0.15 -1.75 16 16 C -0.10 -1.42 2.88 -88.96 -0.26 -1.68 16 17 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 18 C 0.16 3.06 5.55 -4.04 -0.02 3.03 16 19 N -0.76 -17.79 5.30 -59.90 -0.32 -18.10 16 20 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 23 N -0.94 -29.53 13.97 55.49 0.78 -28.75 16 24 Si 0.88 22.15 27.73 -169.99 -4.71 17.43 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 28 C -0.12 -1.32 6.14 -25.61 -0.16 -1.47 16 29 O -0.19 -1.95 10.78 5.35 0.06 -1.90 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.19 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.40 2.24 8.32 -40.82 -0.34 1.90 16 39 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.09 7.97 -51.93 -0.41 0.67 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.54 8.03 -51.93 -0.42 0.13 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.36 8.27 5.50 -40.82 -0.22 8.04 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.08 0.88 7.84 -51.93 -0.41 0.48 16 48 H 0.07 0.63 7.62 -51.93 -0.40 0.23 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -39.18 400.72 -8.04 -47.22 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.67 Total: 4.00 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.04 Total: -1.21 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.07 Total: -58.77 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.72 Total: -14.71 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.18 -8.04 -47.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332277777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.773 kcal (2) G-P(sol) polarization free energy of solvation -39.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds