Wall clock time and date at job start Tue Mar 31 2020 19:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34330 * 126.44161 * 2 1 4 4 N 1.34476 * 107.66694 * 180.02562 * 3 2 1 5 5 C 1.30252 * 108.70204 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.61895 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47019 * 89.97458 * 6 5 4 8 8 C 1.42906 * 113.99953 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47185 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00425 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99968 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00151 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.02099 * 33.60617 * 12 11 9 14 14 C 1.54266 * 110.03329 * 272.16579 * 12 11 9 15 15 C 1.54896 * 104.19495 * 217.10601 * 14 12 11 16 16 C 1.54883 * 102.74869 * 37.93785 * 15 14 12 17 17 H 1.09005 * 110.48442 * 80.73913 * 16 15 14 18 18 C 1.53001 * 110.59826 * 203.32389 * 16 15 14 19 19 N 1.46502 * 109.47209 * 289.84188 * 18 16 15 20 20 C 1.36938 * 120.00054 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00079 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99729 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99653 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 119.99981 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47196 * 90.00106 * 24 22 20 26 26 H 1.48506 * 109.46888 * 209.99994 * 24 22 20 27 27 H 1.48496 * 109.47649 * 329.99883 * 24 22 20 28 28 C 1.53875 * 110.03646 * 154.99365 * 12 11 9 29 29 O 1.33968 * 108.76339 * 359.73269 * 5 4 3 30 30 H 1.09002 * 109.47152 * 90.00157 * 1 2 3 31 31 H 1.09001 * 109.46980 * 330.00258 * 1 2 3 32 32 H 1.09004 * 109.47113 * 210.00238 * 1 2 3 33 33 H 1.07997 * 126.17039 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.46613 * 209.97563 * 6 5 4 35 35 H 1.08994 * 109.46982 * 329.97564 * 6 5 4 36 36 H 1.08992 * 109.47106 * 300.00770 * 8 7 6 37 37 H 1.09004 * 109.46442 * 60.00523 * 8 7 6 38 38 H 0.97000 * 119.99609 * 359.97438 * 11 9 8 39 39 H 1.09001 * 110.48125 * 335.77801 * 14 12 11 40 40 H 1.09000 * 110.49026 * 98.42529 * 14 12 11 41 41 H 1.08996 * 110.75355 * 279.62095 * 15 14 12 42 42 H 1.09000 * 110.91388 * 156.32573 * 15 14 12 43 43 H 1.08999 * 109.47124 * 49.84211 * 18 16 15 44 44 H 1.09006 * 109.47063 * 169.84677 * 18 16 15 45 45 H 0.97002 * 119.99481 * 0.02562 * 19 18 16 46 46 H 0.96998 * 119.99754 * 179.97438 * 23 22 20 47 47 H 1.08992 * 110.03615 * 238.56789 * 28 12 11 48 48 H 1.09005 * 110.02867 * 359.95236 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 -0.0006 5 6 3.5765 -0.6547 -0.0004 6 6 4.8005 -1.5340 -0.0003 7 8 5.1878 -1.8111 1.3470 8 6 6.3445 -2.6427 1.4599 9 6 6.6609 -2.8681 2.9159 10 8 5.9643 -2.3665 3.7726 11 7 7.7182 -3.6271 3.2661 12 6 8.0255 -3.8467 4.6815 13 1 7.1038 -3.8822 5.2624 14 6 8.9382 -2.7187 5.2053 15 6 9.9024 -3.4339 6.1842 16 6 10.1684 -4.7853 5.4756 17 1 10.9235 -4.6663 4.6985 18 6 10.6057 -5.8465 6.4873 19 7 11.9507 -5.5314 6.9751 20 6 12.5536 -6.3465 7.8955 21 1 12.0378 -7.2220 8.2616 22 6 13.8283 -6.0482 8.3573 23 7 14.4080 -6.8319 9.2417 24 14 14.7207 -4.5344 7.7237 25 1 14.4035 -3.3728 8.5927 26 1 16.1852 -4.7800 7.7405 27 1 14.2830 -4.2471 6.3341 28 6 8.8076 -5.1607 4.8535 29 8 2.3075 -1.0840 0.0063 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5138 32 1 -0.3633 -0.8900 0.5139 33 1 1.9822 2.1113 -0.0004 34 1 4.5761 -2.4690 -0.5136 35 1 5.6146 -1.0234 -0.5146 36 1 6.1518 -3.6006 0.9770 37 1 7.1908 -2.1554 0.9757 38 1 8.2751 -4.0286 2.5809 39 1 9.4946 -2.2662 4.3844 40 1 8.3509 -1.9655 5.7304 41 1 9.4241 -3.5921 7.1507 42 1 10.8278 -2.8699 6.3004 43 1 9.9088 -5.8586 7.3253 44 1 10.6135 -6.8250 6.0069 45 1 12.4138 -4.7449 6.6466 46 1 15.2988 -6.6237 9.5641 47 1 8.2660 -5.8333 5.5184 48 1 8.9578 -5.6354 3.8838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332277777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:37 Heat of formation + Delta-G solvation = -79.009430 kcal Electronic energy + Delta-G solvation = -27687.900544 eV Core-core repulsion = 23550.709226 eV Total energy + Delta-G solvation = -4137.191319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.41308 -41.11465 -39.52722 -38.54086 -36.57723 -35.86159 -34.80793 -33.73769 -33.28342 -30.94356 -30.33571 -29.47338 -27.87085 -26.20669 -25.85482 -23.67559 -23.40610 -22.21457 -21.97571 -21.39166 -21.12257 -19.53870 -18.77417 -18.33128 -17.82630 -17.54002 -17.29221 -16.93920 -16.55426 -16.15368 -16.01464 -15.84981 -15.52010 -15.06475 -14.93074 -14.83953 -14.57783 -14.42440 -14.15111 -13.89980 -13.75800 -13.49755 -13.33892 -13.24517 -13.01652 -12.88626 -12.85135 -12.46946 -12.36255 -12.19511 -11.95340 -11.78680 -11.68354 -11.66660 -11.58500 -11.47910 -10.94986 -10.90242 -10.87441 -10.07758 -9.78427 -9.27009 -8.02075 -5.34924 0.22327 1.34648 1.37764 1.42035 1.49213 1.58248 1.61935 1.97207 2.49285 2.82081 3.29620 3.30780 3.49159 3.56958 3.74818 3.79530 3.85567 3.95790 3.99531 4.08291 4.19229 4.24992 4.32466 4.42481 4.47777 4.50026 4.51893 4.61494 4.61740 4.65425 4.67580 4.73462 4.87317 4.97693 5.07230 5.08333 5.12839 5.14504 5.22592 5.24430 5.35253 5.51775 5.59066 5.77162 5.84069 6.22349 6.58625 6.61198 7.09758 7.27096 7.86761 8.06076 9.19726 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.037196 B = 0.001483 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.590991 B =18881.045833 C =19093.028784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.492 5.492 5 C 0.166 3.834 6 C 0.161 3.839 7 O -0.399 6.399 8 C 0.047 3.953 9 C 0.506 3.494 10 O -0.580 6.580 11 N -0.704 5.704 12 C 0.148 3.852 13 H 0.072 0.928 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.091 4.091 17 H 0.086 0.914 18 C 0.159 3.841 19 N -0.757 5.757 20 C -0.236 4.236 21 H 0.054 0.946 22 C -0.065 4.065 23 N -0.986 5.986 24 Si 0.956 3.044 25 H -0.280 1.280 26 H -0.295 1.295 27 H -0.247 1.247 28 C -0.109 4.109 29 O -0.210 6.210 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.209 0.791 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.421 0.579 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.020 0.980 44 H 0.027 0.973 45 H 0.366 0.634 46 H 0.257 0.743 47 H 0.077 0.923 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.451 13.064 -28.836 41.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.206 4.206 4 N -0.223 5.223 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.318 6.318 8 C -0.031 4.031 9 C 0.293 3.707 10 O -0.459 6.459 11 N -0.358 5.358 12 C 0.043 3.957 13 H 0.090 0.910 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.110 4.110 17 H 0.104 0.896 18 C 0.033 3.967 19 N -0.403 5.403 20 C -0.367 4.367 21 H 0.072 0.928 22 C -0.256 4.256 23 N -0.636 5.636 24 Si 0.783 3.217 25 H -0.206 1.206 26 H -0.222 1.222 27 H -0.172 1.172 28 C -0.148 4.148 29 O -0.097 6.097 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.226 0.774 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.259 0.741 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.045 0.955 45 H 0.200 0.800 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -26.517 13.586 -27.947 40.850 hybrid contribution 0.672 0.090 0.197 0.706 sum -25.845 13.676 -27.750 40.311 Atomic orbital electron populations 1.20558 0.80693 1.05801 1.05459 1.24419 0.96836 0.83811 1.04160 1.23623 0.87101 1.02051 1.07857 1.70382 1.24866 1.10018 1.17032 1.26227 0.84789 0.90258 1.02785 1.20808 0.88579 0.97761 0.84431 1.88011 1.46957 1.70730 1.26088 1.22470 0.89951 0.98036 0.92681 1.20940 0.80149 0.77926 0.91649 1.90741 1.51167 1.50340 1.53685 1.45926 1.29792 1.51608 1.08493 1.21477 0.97876 0.94795 0.81569 0.90994 1.22692 0.97071 0.97438 0.99144 1.22477 0.98970 0.95736 0.98258 1.22094 0.97658 0.94149 0.97101 0.89603 1.20873 0.84666 0.96485 0.94642 1.42704 1.16690 1.29954 1.50925 1.19074 0.98128 1.04664 1.14846 0.92765 1.25529 0.98250 1.02142 0.99708 1.69894 1.16070 1.41518 1.36145 0.85397 0.77396 0.79479 0.79465 1.20648 1.22221 1.17181 1.22317 0.93967 0.95717 1.02769 1.84394 1.18105 1.37597 1.69572 0.87662 0.86730 0.89869 0.77445 0.86651 0.86311 0.85668 0.86106 0.74098 0.90128 0.92626 0.92265 0.92022 0.96239 0.95521 0.80042 0.93379 0.90443 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.43 71.24 0.74 0.38 16 2 C -0.04 -0.60 7.39 24.79 0.18 -0.41 16 3 C -0.07 -1.17 11.80 83.39 0.98 -0.18 16 4 N -0.49 -11.15 11.29 -303.83 -3.43 -14.58 16 5 C 0.17 3.32 7.97 88.35 0.70 4.02 16 6 C 0.16 1.96 6.56 71.24 0.47 2.43 16 7 O -0.40 -7.66 9.86 -129.94 -1.28 -8.94 16 8 C 0.05 0.50 6.42 71.23 0.46 0.96 16 9 C 0.51 10.03 7.90 87.65 0.69 10.72 16 10 O -0.58 -18.82 16.15 16.00 0.26 -18.56 16 11 N -0.70 -10.27 5.04 -439.11 -2.21 -12.48 16 12 C 0.15 2.99 3.25 45.72 0.15 3.14 16 13 H 0.07 1.80 7.57 -2.38 -0.02 1.78 16 14 C -0.12 -2.82 6.53 31.67 0.21 -2.61 16 15 C -0.12 -3.09 6.20 31.89 0.20 -2.89 16 16 C -0.09 -2.35 2.88 -9.72 -0.03 -2.37 16 17 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 18 C 0.16 5.77 5.55 86.38 0.48 6.25 16 19 N -0.76 -34.92 5.30 -343.43 -1.82 -36.74 16 20 C -0.24 -13.58 10.47 84.03 0.88 -12.70 16 21 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 22 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 23 N -0.99 -63.72 13.97 21.65 0.30 -63.41 16 24 Si 0.96 45.36 27.73 68.60 1.90 47.27 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.25 -10.39 6.52 99.48 0.65 -9.75 16 28 C -0.11 -2.07 6.14 31.32 0.19 -1.88 16 29 O -0.21 -4.15 10.78 -3.76 -0.04 -4.19 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.21 2.18 8.06 -2.91 -0.02 2.15 16 34 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.42 2.77 8.32 -92.71 -0.77 2.00 16 39 H 0.08 1.62 8.05 -2.39 -0.02 1.60 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.73 7.97 -2.39 -0.02 1.71 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.02 0.75 8.03 -2.39 -0.02 0.73 16 44 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.37 15.97 5.50 -92.71 -0.51 15.46 16 46 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 47 H 0.08 1.56 7.84 -2.39 -0.02 1.54 16 48 H 0.10 1.34 7.62 -2.38 -0.02 1.32 16 Total: -1.00 -90.11 400.72 0.09 -90.01 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.36 Total: 20.17 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 6.78 Total: 1.44 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -7.16 Total: -127.21 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.06 Total: -31.68 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.27 kcal Total: -90.11 0.09 -90.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332277777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.003 kcal (2) G-P(sol) polarization free energy of solvation -90.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds