Wall clock time and date at job start Tue Mar 31 2020 19:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34329 * 126.44104 * 2 1 4 4 N 1.34477 * 107.66617 * 179.87854 * 3 2 1 5 5 C 1.30253 * 108.70302 * 0.39176 * 4 3 2 6 6 C 1.50693 * 125.62165 * 179.77988 * 5 4 3 7 7 O 1.42901 * 109.47389 * 89.97348 * 6 5 4 8 8 C 1.42897 * 114.00510 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47655 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99463 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00353 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99850 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.66881 * 31.77399 * 12 11 9 14 14 C 1.54884 * 110.75851 * 268.32777 * 12 11 9 15 15 C 1.54262 * 104.19600 * 203.74287 * 14 12 11 16 16 C 1.53871 * 106.59830 * 23.61500 * 15 14 12 17 17 H 1.08996 * 110.07220 * 240.68992 * 16 15 14 18 18 C 1.53001 * 110.03359 * 119.28172 * 16 15 14 19 19 N 1.46501 * 109.47236 * 67.83488 * 18 16 15 20 20 C 1.36936 * 120.00179 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99963 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99932 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99912 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99937 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47358 * 90.00344 * 24 22 20 26 26 H 1.48504 * 109.47132 * 210.00170 * 24 22 20 27 27 H 1.48499 * 109.47340 * 329.99987 * 24 22 20 28 28 C 1.54272 * 106.59986 * 359.97438 * 16 15 14 29 29 O 1.33972 * 108.76000 * 359.75863 * 5 4 3 30 30 H 1.09002 * 109.47152 * 179.71335 * 1 2 3 31 31 H 1.09001 * 109.46980 * 59.71435 * 1 2 3 32 32 H 1.09004 * 109.47113 * 299.71416 * 1 2 3 33 33 H 1.08005 * 126.16818 * 359.97438 * 3 2 1 34 34 H 1.09007 * 109.47396 * 209.97129 * 6 5 4 35 35 H 1.09005 * 109.47522 * 329.97447 * 6 5 4 36 36 H 1.08997 * 109.47141 * 300.00355 * 8 7 6 37 37 H 1.09006 * 109.47046 * 59.99956 * 8 7 6 38 38 H 0.96995 * 119.99570 * 0.02562 * 11 9 8 39 39 H 1.09000 * 110.48862 * 322.42461 * 14 12 11 40 40 H 1.09003 * 110.48154 * 85.06525 * 14 12 11 41 41 H 1.08999 * 110.03380 * 264.32922 * 15 14 12 42 42 H 1.09008 * 110.07104 * 142.91922 * 15 14 12 43 43 H 1.09005 * 109.47167 * 187.83200 * 18 16 15 44 44 H 1.09004 * 109.47155 * 307.83139 * 18 16 15 45 45 H 0.96999 * 119.99850 * 359.97438 * 19 18 16 46 46 H 0.96996 * 120.00406 * 179.97438 * 23 22 20 47 47 H 1.08990 * 110.48380 * 217.71261 * 28 16 15 48 48 H 1.09006 * 110.48325 * 95.07015 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0027 5 6 3.5765 -0.6547 -0.0041 6 6 4.8004 -1.5339 -0.0086 7 8 5.1876 -1.8184 1.3372 8 6 6.3442 -2.6505 1.4459 9 6 6.6598 -2.8847 2.9007 10 8 5.9625 -2.3883 3.7600 11 7 7.7162 -3.6467 3.2469 12 6 8.0233 -3.8739 4.6613 13 1 7.1104 -3.8811 5.2568 14 6 9.0172 -2.8079 5.1854 15 6 9.6955 -3.4850 6.3942 16 6 9.5638 -5.0028 6.1788 17 1 8.9973 -5.4489 6.9962 18 6 10.9511 -5.6423 6.0931 19 7 11.6093 -5.5581 7.3992 20 6 12.8693 -6.0681 7.5652 21 1 13.3776 -6.5328 6.7333 22 6 13.4931 -5.9877 8.8026 23 7 14.7039 -6.4784 8.9623 24 14 12.6141 -5.1832 10.2412 25 1 11.8326 -6.2077 10.9794 26 1 13.6141 -4.5716 11.1529 27 1 11.6969 -4.1308 9.7350 28 6 8.8095 -5.1952 4.8469 29 8 2.3075 -1.0840 -0.0059 30 1 -0.3633 -1.0277 -0.0051 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 0.5094 0.8926 33 1 1.9821 2.1113 -0.0004 34 1 4.5762 -2.4663 -0.5269 35 1 5.6147 -1.0206 -0.5201 36 1 6.1516 -3.6059 0.9578 37 1 7.1907 -2.1607 0.9644 38 1 8.2736 -4.0439 2.5597 39 1 9.7549 -2.5653 4.4205 40 1 8.4836 -1.9110 5.5002 41 1 9.1924 -3.1936 7.3162 42 1 10.7478 -3.2040 6.4385 43 1 10.8517 -6.6884 5.8032 44 1 11.5492 -5.1147 5.3500 45 1 11.1529 -5.1403 8.1462 46 1 15.1400 -6.4219 9.8269 47 1 8.1249 -6.0406 4.9149 48 1 9.5135 -5.3381 4.0270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332277781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:46 Heat of formation + Delta-G solvation = -49.063262 kcal Electronic energy + Delta-G solvation = -27677.721541 eV Core-core repulsion = 23541.828785 eV Total energy + Delta-G solvation = -4135.892755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.78286 -40.23353 -38.66275 -37.72307 -35.18679 -34.99752 -33.55163 -33.24205 -31.36952 -30.29239 -29.04038 -28.64682 -27.01539 -25.58974 -24.37753 -22.78431 -21.92779 -21.58874 -21.15866 -20.74920 -19.37070 -18.10566 -17.71660 -17.53285 -17.13101 -16.81327 -16.70031 -16.02769 -15.57122 -15.28140 -15.09740 -14.53743 -14.50912 -14.13266 -13.86168 -13.65888 -13.65114 -13.40493 -13.04752 -12.93559 -12.76707 -12.72301 -12.48787 -12.22980 -12.03414 -11.76023 -11.63226 -11.40478 -10.98539 -10.95997 -10.87709 -10.51044 -10.42840 -10.41056 -10.26810 -10.02766 -9.97638 -9.57776 -9.20333 -9.19328 -8.87971 -7.21413 -5.76047 -3.11136 0.83556 1.91438 2.20617 2.35551 2.63447 3.36286 3.38873 3.42153 3.46737 3.85791 4.20691 4.32212 4.45416 4.49336 4.56613 4.59843 4.60642 4.61927 4.70668 4.75160 4.84619 4.88810 4.91497 5.03899 5.36231 5.36878 5.47516 5.50610 5.51443 5.56831 5.58793 5.71146 5.81199 5.81948 5.91301 6.02078 6.08841 6.20678 6.25380 6.33591 6.46667 6.53121 6.71242 6.82232 7.25301 7.25585 7.98760 8.00579 8.43286 9.22944 9.95510 10.15666 11.42477 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.001480 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.001208 B =18919.529647 C =19197.335570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.037 4.037 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.185 3.815 6 C 0.162 3.838 7 O -0.357 6.357 8 C 0.045 3.955 9 C 0.513 3.487 10 O -0.518 6.518 11 N -0.719 5.719 12 C 0.139 3.861 13 H 0.097 0.903 14 C -0.132 4.132 15 C -0.119 4.119 16 C -0.100 4.100 17 H 0.074 0.926 18 C 0.165 3.835 19 N -0.756 5.756 20 C -0.244 4.244 21 H 0.089 0.911 22 C 0.004 3.996 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.276 1.276 28 C -0.119 4.119 29 O -0.194 6.194 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.187 0.813 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.401 0.599 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.027 0.973 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.071 0.929 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.159 10.873 -24.206 37.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.021 4.021 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.035 4.035 9 C 0.298 3.702 10 O -0.392 6.392 11 N -0.372 5.372 12 C 0.035 3.965 13 H 0.115 0.885 14 C -0.171 4.171 15 C -0.157 4.157 16 C -0.120 4.120 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.402 5.402 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.158 4.158 29 O -0.081 6.081 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.204 0.796 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.236 0.764 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.013 11.490 -23.456 37.576 hybrid contribution -0.648 -0.046 0.617 0.896 sum -27.661 11.445 -22.839 37.653 Atomic orbital electron populations 1.20333 0.83667 1.04603 1.04123 1.23601 0.95222 0.84482 1.05789 1.23125 0.87543 1.00614 1.07161 1.70415 1.23369 1.09041 1.15926 1.25476 0.83886 0.89945 1.02810 1.20481 0.89158 0.96470 0.85460 1.88081 1.45551 1.69675 1.24118 1.22277 0.89645 0.96065 0.95501 1.20119 0.80850 0.79020 0.90249 1.90765 1.48941 1.48051 1.51423 1.45892 1.30114 1.52177 1.09012 1.22094 0.98652 0.95317 0.80420 0.88518 1.22728 0.97837 0.98127 0.98362 1.22173 1.01887 0.94453 0.97214 1.21929 0.97470 0.95978 0.96577 0.90749 1.20713 0.89571 0.97150 0.88748 1.42724 1.17489 1.72264 1.07680 1.19065 0.90436 1.30727 0.97170 0.89290 1.24666 0.96291 1.00856 0.97341 1.69699 1.13551 1.51160 1.23906 0.86554 0.78997 0.79536 0.83514 1.21107 1.21747 1.20228 1.22594 0.98545 0.96018 0.98635 1.84394 1.17699 1.36644 1.69336 0.90188 0.89104 0.88979 0.79633 0.89807 0.88299 0.89589 0.89427 0.76445 0.91303 0.91571 0.92054 0.90261 0.95669 0.95526 0.80619 0.93089 0.91037 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.01 0.38 0.13 16 2 C -0.04 -0.30 7.39 -35.69 -0.26 -0.56 16 3 C -0.05 -0.39 11.80 -17.77 -0.21 -0.60 16 4 N -0.46 -5.18 11.29 -11.10 -0.13 -5.31 16 5 C 0.19 1.90 7.97 -12.95 -0.10 1.79 16 6 C 0.16 1.14 6.56 36.00 0.24 1.38 16 7 O -0.36 -3.70 9.86 -55.14 -0.54 -4.24 16 8 C 0.04 0.31 6.42 36.01 0.23 0.54 16 9 C 0.51 5.59 7.91 -10.99 -0.09 5.50 16 10 O -0.52 -8.40 16.14 -14.36 -0.23 -8.64 16 11 N -0.72 -6.35 5.18 -51.89 -0.27 -6.62 16 12 C 0.14 1.56 3.27 -65.95 -0.22 1.34 16 13 H 0.10 1.25 7.55 -51.93 -0.39 0.86 16 14 C -0.13 -1.63 6.51 -25.08 -0.16 -1.79 16 15 C -0.12 -1.72 6.18 -25.62 -0.16 -1.88 16 16 C -0.10 -1.45 2.96 -89.50 -0.27 -1.72 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 18 C 0.17 3.07 5.27 -4.04 -0.02 3.05 16 19 N -0.76 -17.84 5.19 -59.90 -0.31 -18.15 16 20 C -0.24 -6.93 10.47 -15.06 -0.16 -7.08 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 23 N -0.94 -29.50 13.97 55.49 0.78 -28.72 16 24 Si 0.88 22.27 27.73 -169.99 -4.71 17.56 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 28 C -0.12 -1.31 5.99 -25.08 -0.15 -1.46 16 29 O -0.19 -1.95 10.78 5.36 0.06 -1.89 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.19 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.40 2.21 8.57 -40.82 -0.35 1.86 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.30 7.61 -51.92 -0.40 0.90 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.36 8.37 5.41 -40.82 -0.22 8.15 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.74 7.73 -51.93 -0.40 0.34 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -39.19 400.80 -8.06 -47.25 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.69 Total: 4.06 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.05 Total: -1.33 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.07 Total: -58.80 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.72 Total: -14.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.19 -8.06 -47.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332277781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.811 kcal (2) G-P(sol) polarization free energy of solvation -39.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds