Wall clock time and date at job start Tue Mar 31 2020 19:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34329 * 126.44104 * 2 1 4 4 N 1.34477 * 107.66617 * 179.87854 * 3 2 1 5 5 C 1.30253 * 108.70302 * 0.39176 * 4 3 2 6 6 C 1.50693 * 125.62165 * 179.77988 * 5 4 3 7 7 O 1.42901 * 109.47389 * 89.97348 * 6 5 4 8 8 C 1.42897 * 114.00510 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47655 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99463 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00353 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99850 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.66881 * 31.77399 * 12 11 9 14 14 C 1.54884 * 110.75851 * 268.32777 * 12 11 9 15 15 C 1.54262 * 104.19600 * 203.74287 * 14 12 11 16 16 C 1.53871 * 106.59830 * 23.61500 * 15 14 12 17 17 H 1.08996 * 110.07220 * 240.68992 * 16 15 14 18 18 C 1.53001 * 110.03359 * 119.28172 * 16 15 14 19 19 N 1.46501 * 109.47236 * 67.83488 * 18 16 15 20 20 C 1.36936 * 120.00179 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99963 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99932 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99912 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99937 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47358 * 90.00344 * 24 22 20 26 26 H 1.48504 * 109.47132 * 210.00170 * 24 22 20 27 27 H 1.48499 * 109.47340 * 329.99987 * 24 22 20 28 28 C 1.54272 * 106.59986 * 359.97438 * 16 15 14 29 29 O 1.33972 * 108.76000 * 359.75863 * 5 4 3 30 30 H 1.09002 * 109.47152 * 179.71335 * 1 2 3 31 31 H 1.09001 * 109.46980 * 59.71435 * 1 2 3 32 32 H 1.09004 * 109.47113 * 299.71416 * 1 2 3 33 33 H 1.08005 * 126.16818 * 359.97438 * 3 2 1 34 34 H 1.09007 * 109.47396 * 209.97129 * 6 5 4 35 35 H 1.09005 * 109.47522 * 329.97447 * 6 5 4 36 36 H 1.08997 * 109.47141 * 300.00355 * 8 7 6 37 37 H 1.09006 * 109.47046 * 59.99956 * 8 7 6 38 38 H 0.96995 * 119.99570 * 0.02562 * 11 9 8 39 39 H 1.09000 * 110.48862 * 322.42461 * 14 12 11 40 40 H 1.09003 * 110.48154 * 85.06525 * 14 12 11 41 41 H 1.08999 * 110.03380 * 264.32922 * 15 14 12 42 42 H 1.09008 * 110.07104 * 142.91922 * 15 14 12 43 43 H 1.09005 * 109.47167 * 187.83200 * 18 16 15 44 44 H 1.09004 * 109.47155 * 307.83139 * 18 16 15 45 45 H 0.96999 * 119.99850 * 359.97438 * 19 18 16 46 46 H 0.96996 * 120.00406 * 179.97438 * 23 22 20 47 47 H 1.08990 * 110.48380 * 217.71261 * 28 16 15 48 48 H 1.09006 * 110.48325 * 95.07015 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0027 5 6 3.5765 -0.6547 -0.0041 6 6 4.8004 -1.5339 -0.0086 7 8 5.1876 -1.8184 1.3372 8 6 6.3442 -2.6505 1.4459 9 6 6.6598 -2.8847 2.9007 10 8 5.9625 -2.3883 3.7600 11 7 7.7162 -3.6467 3.2469 12 6 8.0233 -3.8739 4.6613 13 1 7.1104 -3.8811 5.2568 14 6 9.0172 -2.8079 5.1854 15 6 9.6955 -3.4850 6.3942 16 6 9.5638 -5.0028 6.1788 17 1 8.9973 -5.4489 6.9962 18 6 10.9511 -5.6423 6.0931 19 7 11.6093 -5.5581 7.3992 20 6 12.8693 -6.0681 7.5652 21 1 13.3776 -6.5328 6.7333 22 6 13.4931 -5.9877 8.8026 23 7 14.7039 -6.4784 8.9623 24 14 12.6141 -5.1832 10.2412 25 1 11.8326 -6.2077 10.9794 26 1 13.6141 -4.5716 11.1529 27 1 11.6969 -4.1308 9.7350 28 6 8.8095 -5.1952 4.8469 29 8 2.3075 -1.0840 -0.0059 30 1 -0.3633 -1.0277 -0.0051 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 0.5094 0.8926 33 1 1.9821 2.1113 -0.0004 34 1 4.5762 -2.4663 -0.5269 35 1 5.6147 -1.0206 -0.5201 36 1 6.1516 -3.6059 0.9578 37 1 7.1907 -2.1607 0.9644 38 1 8.2736 -4.0439 2.5597 39 1 9.7549 -2.5653 4.4205 40 1 8.4836 -1.9110 5.5002 41 1 9.1924 -3.1936 7.3162 42 1 10.7478 -3.2040 6.4385 43 1 10.8517 -6.6884 5.8032 44 1 11.5492 -5.1147 5.3500 45 1 11.1529 -5.1403 8.1462 46 1 15.1400 -6.4219 9.8269 47 1 8.1249 -6.0406 4.9149 48 1 9.5135 -5.3381 4.0270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332277781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:45 Heat of formation + Delta-G solvation = -80.059064 kcal Electronic energy + Delta-G solvation = -27679.065619 eV Core-core repulsion = 23541.828785 eV Total energy + Delta-G solvation = -4137.236834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.41152 -41.08195 -39.55811 -38.56691 -36.55613 -35.85989 -34.85730 -33.73426 -33.27832 -30.93906 -30.29477 -29.47528 -27.89784 -26.20593 -25.84142 -23.72138 -23.40092 -22.21997 -22.01776 -21.68196 -20.67711 -19.51798 -18.73927 -18.34353 -17.80558 -17.54713 -17.29581 -16.97004 -16.63845 -16.40648 -16.01778 -15.76937 -15.57685 -15.21117 -14.90641 -14.67345 -14.48623 -14.29785 -14.15652 -13.89696 -13.79787 -13.40806 -13.33378 -13.23151 -13.04427 -12.97163 -12.89139 -12.48567 -12.46374 -12.14093 -12.01304 -11.85166 -11.74825 -11.66089 -11.60424 -11.28768 -10.95071 -10.90616 -10.89984 -10.06576 -9.77683 -9.27172 -8.02576 -5.34937 0.22511 1.34178 1.37963 1.40179 1.47696 1.57247 1.62628 1.95327 2.48323 2.81498 3.28959 3.29853 3.54057 3.57829 3.74595 3.76870 3.81743 3.99711 4.03595 4.08100 4.19382 4.25181 4.31007 4.35770 4.45398 4.47090 4.50600 4.59268 4.61448 4.65935 4.66579 4.75722 4.92861 4.97783 5.01548 5.13548 5.13844 5.15526 5.23002 5.24726 5.38458 5.48380 5.57459 5.77088 5.84061 6.22050 6.58167 6.61427 7.09276 7.26124 7.87017 8.04914 9.19041 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.001480 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.001208 B =18919.529647 C =19197.335570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.069 4.069 4 N -0.492 5.492 5 C 0.165 3.835 6 C 0.161 3.839 7 O -0.399 6.399 8 C 0.047 3.953 9 C 0.507 3.493 10 O -0.581 6.581 11 N -0.702 5.702 12 C 0.146 3.854 13 H 0.078 0.922 14 C -0.125 4.125 15 C -0.119 4.119 16 C -0.094 4.094 17 H 0.073 0.927 18 C 0.162 3.838 19 N -0.760 5.760 20 C -0.233 4.233 21 H 0.059 0.941 22 C -0.063 4.063 23 N -0.984 5.984 24 Si 0.951 3.049 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.253 1.253 28 C -0.106 4.106 29 O -0.209 6.209 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.208 0.792 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.421 0.579 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.365 0.635 46 H 0.257 0.743 47 H 0.086 0.914 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.225 11.066 -25.951 40.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.207 4.207 4 N -0.223 5.223 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.318 6.318 8 C -0.031 4.031 9 C 0.295 3.705 10 O -0.460 6.460 11 N -0.356 5.356 12 C 0.041 3.959 13 H 0.097 0.903 14 C -0.163 4.163 15 C -0.157 4.157 16 C -0.113 4.113 17 H 0.091 0.909 18 C 0.037 3.963 19 N -0.405 5.405 20 C -0.364 4.364 21 H 0.077 0.923 22 C -0.254 4.254 23 N -0.635 5.635 24 Si 0.779 3.221 25 H -0.205 1.205 26 H -0.223 1.223 27 H -0.177 1.177 28 C -0.144 4.144 29 O -0.096 6.096 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.225 0.775 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.259 0.741 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.198 0.802 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.097 11.671 -25.275 40.271 hybrid contribution -0.005 -0.117 1.064 1.071 sum -29.103 11.554 -24.211 39.581 Atomic orbital electron populations 1.20560 0.80684 1.05429 1.05846 1.24418 0.96841 0.83803 1.04124 1.23599 0.87106 1.02072 1.07919 1.70385 1.24870 1.10038 1.17000 1.26211 0.84794 0.90256 1.02832 1.20809 0.88582 0.97741 0.84448 1.88008 1.46940 1.70666 1.26170 1.22465 0.89974 0.98046 0.92636 1.20940 0.80087 0.77838 0.91685 1.90742 1.51105 1.50622 1.53485 1.45700 1.29869 1.51511 1.08513 1.21819 0.97510 0.94908 0.81678 0.90334 1.22648 0.98025 0.97871 0.97800 1.22121 1.00679 0.94702 0.98205 1.21840 0.95245 0.95442 0.98806 0.90889 1.20910 0.91455 0.97631 0.86349 1.42774 1.16110 1.71820 1.09820 1.19078 0.91922 1.29288 0.96127 0.92344 1.25469 0.97168 1.02353 1.00457 1.69875 1.15581 1.53461 1.24561 0.85456 0.77975 0.79083 0.79594 1.20481 1.22306 1.17743 1.22497 0.98609 0.96272 0.97032 1.84399 1.18099 1.37581 1.69547 0.89785 0.86801 0.87619 0.77475 0.86616 0.86326 0.85597 0.86101 0.74060 0.90297 0.92691 0.92278 0.92371 0.95470 0.95428 0.80230 0.93395 0.89528 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.43 71.24 0.74 0.38 16 2 C -0.04 -0.59 7.39 24.79 0.18 -0.41 16 3 C -0.07 -1.18 11.80 83.39 0.98 -0.20 16 4 N -0.49 -11.20 11.29 -303.83 -3.43 -14.63 16 5 C 0.17 3.32 7.97 88.34 0.70 4.02 16 6 C 0.16 1.98 6.56 71.23 0.47 2.44 16 7 O -0.40 -7.69 9.86 -129.94 -1.28 -8.97 16 8 C 0.05 0.51 6.42 71.24 0.46 0.97 16 9 C 0.51 10.14 7.91 87.66 0.69 10.83 16 10 O -0.58 -18.88 16.14 15.98 0.26 -18.62 16 11 N -0.70 -10.45 5.18 -436.47 -2.26 -12.71 16 12 C 0.15 2.97 3.27 46.27 0.15 3.12 16 13 H 0.08 1.95 7.55 -2.39 -0.02 1.94 16 14 C -0.12 -2.90 6.51 31.67 0.21 -2.69 16 15 C -0.12 -3.28 6.18 31.32 0.19 -3.09 16 16 C -0.09 -2.54 2.96 -10.07 -0.03 -2.57 16 17 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 18 C 0.16 5.80 5.27 86.38 0.46 6.25 16 19 N -0.76 -35.20 5.19 -343.43 -1.78 -36.99 16 20 C -0.23 -13.33 10.47 84.03 0.88 -12.45 16 21 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 22 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 23 N -0.98 -63.42 13.97 21.65 0.30 -63.12 16 24 Si 0.95 46.00 27.73 68.60 1.90 47.90 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 26 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 27 H -0.25 -11.09 6.52 99.48 0.65 -10.45 16 28 C -0.11 -2.00 5.99 31.66 0.19 -1.81 16 29 O -0.21 -4.14 10.78 -3.75 -0.04 -4.18 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.42 2.93 8.57 -92.71 -0.79 2.13 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.85 7.61 -2.38 -0.02 1.84 16 43 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.36 16.32 5.41 -92.71 -0.50 15.81 16 46 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 48 H 0.09 1.48 7.73 -2.38 -0.02 1.46 16 Total: -1.00 -89.51 400.80 0.03 -89.48 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -0.38 Total: 20.32 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.75 Total: 1.52 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -7.17 Total: -127.46 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.06 Total: -31.77 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.90 Total: 47.90 kcal Total: -89.51 0.03 -89.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332277781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.420 kcal (2) G-P(sol) polarization free energy of solvation -89.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds