Wall clock time and date at job start Tue Mar 31 2020 19:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34333 * 126.44202 * 2 1 4 4 N 1.34479 * 107.66780 * 179.72611 * 3 2 1 5 5 C 1.30251 * 108.69827 * 0.41900 * 4 3 2 6 6 C 1.50702 * 125.61768 * 179.83616 * 5 4 3 7 7 O 1.42901 * 109.46935 * 89.69986 * 6 5 4 8 8 C 1.42900 * 113.99987 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47424 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99696 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00446 * 179.97438 * 9 8 7 12 12 C 1.46493 * 119.99977 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.01975 * 326.38735 * 12 11 9 14 14 C 1.54269 * 110.03718 * 87.82948 * 12 11 9 15 15 C 1.55032 * 104.27833 * 142.79929 * 14 12 11 16 16 C 1.54881 * 102.68502 * 322.23515 * 15 14 12 17 17 H 1.09006 * 110.48920 * 279.02910 * 16 15 14 18 18 C 1.53005 * 110.48896 * 156.51815 * 16 15 14 19 19 N 1.46505 * 109.46904 * 68.24079 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.53876 * 110.02942 * 205.00016 * 12 11 9 29 29 O 1.33961 * 108.76510 * 359.58047 * 5 4 3 30 30 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47600 * 299.99838 * 1 2 3 32 32 H 1.09004 * 109.47351 * 59.99635 * 1 2 3 33 33 H 1.08000 * 126.16406 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47435 * 329.69903 * 6 5 4 35 35 H 1.09001 * 109.47601 * 209.70023 * 6 5 4 36 36 H 1.08997 * 109.47657 * 59.99712 * 8 7 6 37 37 H 1.09001 * 109.46915 * 299.99440 * 8 7 6 38 38 H 0.96998 * 119.99503 * 359.97438 * 11 9 8 39 39 H 1.08995 * 110.48656 * 261.57057 * 14 12 11 40 40 H 1.08999 * 110.48093 * 24.08418 * 14 12 11 41 41 H 1.09004 * 110.87147 * 203.90327 * 15 14 12 42 42 H 1.08994 * 110.69513 * 80.49103 * 15 14 12 43 43 H 1.09003 * 109.46946 * 308.24838 * 18 16 15 44 44 H 1.08993 * 109.47679 * 188.24380 * 18 16 15 45 45 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 46 46 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 47 47 H 1.09001 * 110.03595 * 121.43257 * 28 12 11 48 48 H 1.09001 * 110.03522 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0061 5 6 3.5764 -0.6547 0.0008 6 6 4.8004 -1.5339 0.0013 7 8 5.1868 -1.8116 1.3487 8 6 6.3441 -2.6422 1.4621 9 6 6.6589 -2.8692 2.9182 10 8 5.9611 -2.3685 3.7747 11 7 7.7157 -3.6286 3.2688 12 6 8.0213 -3.8497 4.6844 13 1 7.7603 -2.9650 5.2651 14 6 7.2437 -5.0749 5.2079 15 6 8.2292 -5.7636 6.1867 16 6 9.5947 -5.5807 5.4792 17 1 9.7258 -6.3340 4.7022 18 6 10.7377 -5.6552 6.4936 19 7 10.8403 -7.0207 7.0143 20 6 11.7981 -7.3291 7.9430 21 1 12.4778 -6.5657 8.2919 22 6 11.8916 -8.6217 8.4406 23 7 12.8088 -8.9169 9.3372 24 14 10.7157 -9.9420 7.8377 25 1 11.2995 -10.6215 6.6534 26 1 10.4913 -10.9358 8.9181 27 1 9.4214 -9.3181 7.4624 28 6 9.5162 -4.1713 4.8569 29 8 2.3075 -1.0839 0.0005 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.9820 2.1113 -0.0004 34 1 5.6149 -1.0232 -0.5124 35 1 4.5765 -2.4688 -0.5124 36 1 7.1905 -2.1542 0.9788 37 1 6.1525 -3.6001 0.9786 38 1 8.2735 -4.0293 2.5839 39 1 6.3422 -4.7588 5.7327 40 1 6.9907 -5.7455 4.3867 41 1 7.9904 -6.8214 6.2980 42 1 8.2250 -5.2617 7.1542 43 1 10.5396 -4.9669 7.3153 44 1 11.6737 -5.3805 6.0073 45 1 10.2296 -7.7063 6.7012 46 1 12.8744 -9.8201 9.6848 47 1 9.9805 -3.4431 5.5220 48 1 10.0142 -4.1632 3.8873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332277784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:50 Heat of formation + Delta-G solvation = -47.984042 kcal Electronic energy + Delta-G solvation = -27699.976502 eV Core-core repulsion = 23564.130545 eV Total energy + Delta-G solvation = -4135.845957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.78658 -40.27023 -38.66538 -37.68840 -35.18979 -35.00070 -33.51799 -33.24207 -31.38096 -30.29453 -29.09189 -28.65922 -27.00231 -25.59012 -24.39902 -22.78721 -21.90134 -21.59110 -21.13196 -20.44415 -19.86034 -18.11805 -17.70663 -17.53135 -17.16263 -16.80593 -16.70866 -16.10874 -15.39740 -15.16098 -14.80570 -14.64714 -14.48804 -14.28517 -13.92314 -13.66373 -13.65190 -13.39580 -13.27080 -12.94938 -12.80696 -12.62130 -12.50263 -12.36859 -11.90261 -11.76359 -11.69286 -11.27729 -10.99170 -10.94786 -10.80005 -10.58313 -10.41751 -10.38795 -10.35685 -10.06850 -10.00222 -9.57990 -9.21949 -9.20234 -8.88031 -7.21118 -5.75809 -3.10807 0.83276 1.91271 2.20286 2.35769 2.64073 3.36359 3.37217 3.39659 3.45329 3.85688 4.20597 4.32338 4.45105 4.49090 4.56519 4.59254 4.59977 4.61464 4.66696 4.71001 4.84685 4.88569 4.93320 5.03828 5.35698 5.36736 5.45625 5.49660 5.52102 5.56799 5.57643 5.74861 5.78855 5.80859 5.90842 5.97591 6.06353 6.17312 6.26193 6.38284 6.43102 6.49261 6.69517 6.82089 7.24843 7.25112 7.98895 8.01113 8.43472 9.23092 9.95497 10.15724 11.42796 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.033340 B = 0.001501 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.637094 B =18652.663937 C =18988.576223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.037 4.037 3 C -0.045 4.045 4 N -0.457 5.457 5 C 0.185 3.815 6 C 0.162 3.838 7 O -0.357 6.357 8 C 0.045 3.955 9 C 0.512 3.488 10 O -0.517 6.517 11 N -0.721 5.721 12 C 0.142 3.858 13 H 0.092 0.908 14 C -0.134 4.134 15 C -0.114 4.114 16 C -0.101 4.101 17 H 0.074 0.926 18 C 0.164 3.836 19 N -0.755 5.755 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.121 4.121 29 O -0.194 6.194 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.187 0.813 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.026 0.974 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.080 0.920 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.955 17.195 -25.712 37.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.185 4.185 4 N -0.188 5.188 5 C -0.021 4.021 6 C 0.084 3.916 7 O -0.274 6.274 8 C -0.035 4.035 9 C 0.297 3.703 10 O -0.391 6.391 11 N -0.374 5.374 12 C 0.038 3.962 13 H 0.110 0.890 14 C -0.173 4.173 15 C -0.152 4.152 16 C -0.120 4.120 17 H 0.093 0.907 18 C 0.037 3.963 19 N -0.401 5.401 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.715 3.285 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.160 4.160 29 O -0.080 6.080 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.204 0.796 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.829 17.974 -24.742 37.574 hybrid contribution -0.969 -1.695 -0.869 2.137 sum -22.798 16.279 -25.611 37.956 Atomic orbital electron populations 1.20333 0.83664 1.04622 1.04125 1.23604 0.95228 0.84477 1.05753 1.23124 0.87544 1.00608 1.07188 1.70413 1.23372 1.09032 1.15949 1.25474 0.83894 0.89944 1.02818 1.20480 0.89159 0.96497 0.85439 1.88083 1.45510 1.69772 1.24037 1.22280 0.89596 0.96087 0.95542 1.20125 0.81064 0.78934 0.90217 1.90766 1.48396 1.48310 1.51645 1.46117 1.30220 1.52110 1.08994 1.21736 0.95048 0.99068 0.80306 0.88975 1.22817 0.98680 0.96396 0.99371 1.22527 0.93534 1.00810 0.98332 1.22208 0.95929 0.95754 0.98127 0.90747 1.20680 0.94368 0.87722 0.93559 1.42697 1.39939 1.06351 1.51103 1.19081 1.08103 0.95833 1.14308 0.89263 1.24671 0.98553 0.97120 0.98867 1.69701 1.35988 1.19812 1.32830 0.86545 0.81309 0.82548 0.78117 1.21161 1.21756 1.20312 1.22422 0.93941 0.98097 1.01515 1.84394 1.17695 1.36649 1.69309 0.90179 0.88972 0.89096 0.79630 0.88319 0.89821 0.89484 0.89627 0.76515 0.91358 0.91511 0.91311 0.90784 0.95415 0.95629 0.80694 0.93097 0.90174 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.00 0.38 0.12 16 2 C -0.04 -0.30 7.39 -35.69 -0.26 -0.56 16 3 C -0.05 -0.39 11.80 -17.77 -0.21 -0.60 16 4 N -0.46 -5.15 11.29 -11.10 -0.13 -5.28 16 5 C 0.19 1.89 7.97 -12.95 -0.10 1.79 16 6 C 0.16 1.14 6.56 36.01 0.24 1.38 16 7 O -0.36 -3.70 9.86 -55.14 -0.54 -4.25 16 8 C 0.04 0.31 6.42 36.00 0.23 0.54 16 9 C 0.51 5.57 7.90 -10.99 -0.09 5.48 16 10 O -0.52 -8.36 16.15 -14.36 -0.23 -8.60 16 11 N -0.72 -6.34 5.03 -52.72 -0.27 -6.61 16 12 C 0.14 1.58 3.25 -66.81 -0.22 1.36 16 13 H 0.09 1.18 7.56 -51.93 -0.39 0.79 16 14 C -0.13 -1.62 6.53 -24.99 -0.16 -1.78 16 15 C -0.11 -1.60 6.11 -24.67 -0.15 -1.76 16 16 C -0.10 -1.42 2.90 -88.96 -0.26 -1.68 16 17 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 18 C 0.16 3.05 5.54 -4.04 -0.02 3.03 16 19 N -0.76 -17.76 5.27 -59.90 -0.32 -18.08 16 20 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 23 N -0.94 -29.52 13.97 55.49 0.78 -28.74 16 24 Si 0.88 22.10 27.74 -169.99 -4.72 17.38 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.48 6.51 56.52 0.37 -6.11 16 28 C -0.12 -1.32 6.14 -25.61 -0.16 -1.48 16 29 O -0.19 -1.96 10.77 5.38 0.06 -1.91 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 2.23 8.32 -40.82 -0.34 1.89 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 43 H 0.03 0.53 8.06 -51.93 -0.42 0.12 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.36 8.25 5.44 -40.82 -0.22 8.02 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.08 0.89 7.84 -51.93 -0.41 0.49 16 48 H 0.07 0.63 7.62 -51.93 -0.40 0.23 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -39.14 400.62 -8.04 -47.18 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.67 Total: 4.06 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.04 Total: -1.21 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.07 Total: -58.71 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.72 Total: -14.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.72 Total: 17.38 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.14 -8.04 -47.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332277784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.803 kcal (2) G-P(sol) polarization free energy of solvation -39.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds