Wall clock time and date at job start Tue Mar 31 2020 19:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34333 * 126.44202 * 2 1 4 4 N 1.34479 * 107.66780 * 179.72611 * 3 2 1 5 5 C 1.30251 * 108.69827 * 0.41900 * 4 3 2 6 6 C 1.50702 * 125.61768 * 179.83616 * 5 4 3 7 7 O 1.42901 * 109.46935 * 89.69986 * 6 5 4 8 8 C 1.42900 * 113.99987 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47424 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99696 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00446 * 179.97438 * 9 8 7 12 12 C 1.46493 * 119.99977 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.01975 * 326.38735 * 12 11 9 14 14 C 1.54269 * 110.03718 * 87.82948 * 12 11 9 15 15 C 1.55032 * 104.27833 * 142.79929 * 14 12 11 16 16 C 1.54881 * 102.68502 * 322.23515 * 15 14 12 17 17 H 1.09006 * 110.48920 * 279.02910 * 16 15 14 18 18 C 1.53005 * 110.48896 * 156.51815 * 16 15 14 19 19 N 1.46505 * 109.46904 * 68.24079 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.53876 * 110.02942 * 205.00016 * 12 11 9 29 29 O 1.33961 * 108.76510 * 359.58047 * 5 4 3 30 30 H 1.08999 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47600 * 299.99838 * 1 2 3 32 32 H 1.09004 * 109.47351 * 59.99635 * 1 2 3 33 33 H 1.08000 * 126.16406 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47435 * 329.69903 * 6 5 4 35 35 H 1.09001 * 109.47601 * 209.70023 * 6 5 4 36 36 H 1.08997 * 109.47657 * 59.99712 * 8 7 6 37 37 H 1.09001 * 109.46915 * 299.99440 * 8 7 6 38 38 H 0.96998 * 119.99503 * 359.97438 * 11 9 8 39 39 H 1.08995 * 110.48656 * 261.57057 * 14 12 11 40 40 H 1.08999 * 110.48093 * 24.08418 * 14 12 11 41 41 H 1.09004 * 110.87147 * 203.90327 * 15 14 12 42 42 H 1.08994 * 110.69513 * 80.49103 * 15 14 12 43 43 H 1.09003 * 109.46946 * 308.24838 * 18 16 15 44 44 H 1.08993 * 109.47679 * 188.24380 * 18 16 15 45 45 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 46 46 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 47 47 H 1.09001 * 110.03595 * 121.43257 * 28 12 11 48 48 H 1.09001 * 110.03522 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0061 5 6 3.5764 -0.6547 0.0008 6 6 4.8004 -1.5339 0.0013 7 8 5.1868 -1.8116 1.3487 8 6 6.3441 -2.6422 1.4621 9 6 6.6589 -2.8692 2.9182 10 8 5.9611 -2.3685 3.7747 11 7 7.7157 -3.6286 3.2688 12 6 8.0213 -3.8497 4.6844 13 1 7.7603 -2.9650 5.2651 14 6 7.2437 -5.0749 5.2079 15 6 8.2292 -5.7636 6.1867 16 6 9.5947 -5.5807 5.4792 17 1 9.7258 -6.3340 4.7022 18 6 10.7377 -5.6552 6.4936 19 7 10.8403 -7.0207 7.0143 20 6 11.7981 -7.3291 7.9430 21 1 12.4778 -6.5657 8.2919 22 6 11.8916 -8.6217 8.4406 23 7 12.8088 -8.9169 9.3372 24 14 10.7157 -9.9420 7.8377 25 1 11.2995 -10.6215 6.6534 26 1 10.4913 -10.9358 8.9181 27 1 9.4214 -9.3181 7.4624 28 6 9.5162 -4.1713 4.8569 29 8 2.3075 -1.0839 0.0005 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.9820 2.1113 -0.0004 34 1 5.6149 -1.0232 -0.5124 35 1 4.5765 -2.4688 -0.5124 36 1 7.1905 -2.1542 0.9788 37 1 6.1525 -3.6001 0.9786 38 1 8.2735 -4.0293 2.5839 39 1 6.3422 -4.7588 5.7327 40 1 6.9907 -5.7455 4.3867 41 1 7.9904 -6.8214 6.2980 42 1 8.2250 -5.2617 7.1542 43 1 10.5396 -4.9669 7.3153 44 1 11.6737 -5.3805 6.0073 45 1 10.2296 -7.7063 6.7012 46 1 12.8744 -9.8201 9.6848 47 1 9.9805 -3.4431 5.5220 48 1 10.0142 -4.1632 3.8873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332277784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:49 Heat of formation + Delta-G solvation = -78.978258 kcal Electronic energy + Delta-G solvation = -27701.320512 eV Core-core repulsion = 23564.130545 eV Total energy + Delta-G solvation = -4137.189967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.41399 -41.11315 -39.52550 -38.54035 -36.57662 -35.86112 -34.80579 -33.73618 -33.28019 -30.94300 -30.33715 -29.47370 -27.87115 -26.20790 -25.85532 -23.68931 -23.40263 -22.21600 -21.97500 -21.38940 -21.11048 -19.54483 -18.77296 -18.32946 -17.84030 -17.53414 -17.26916 -16.92885 -16.56056 -16.21053 -16.06570 -15.76172 -15.41494 -15.19067 -14.96556 -14.83213 -14.56208 -14.36660 -14.17544 -13.89828 -13.74931 -13.51933 -13.34319 -13.25252 -13.04057 -12.86110 -12.85361 -12.46885 -12.37246 -12.14456 -11.97198 -11.77922 -11.69684 -11.66466 -11.60766 -11.47679 -10.94277 -10.90174 -10.87431 -10.07892 -9.77794 -9.27042 -8.01954 -5.34889 0.22347 1.34389 1.37932 1.42018 1.49476 1.58208 1.62600 1.97056 2.49384 2.82183 3.29211 3.30918 3.49133 3.56616 3.75034 3.79617 3.85845 3.95830 3.99755 4.08071 4.19157 4.25038 4.32251 4.42328 4.46594 4.49682 4.51854 4.61240 4.61628 4.66288 4.67514 4.72792 4.87078 4.97545 5.07268 5.08180 5.13414 5.14359 5.22205 5.24655 5.34901 5.51717 5.59032 5.77118 5.84162 6.22329 6.58703 6.61171 7.09804 7.27166 7.86743 8.06257 9.19831 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.033340 B = 0.001501 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.637094 B =18652.663937 C =18988.576223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.068 4.068 4 N -0.491 5.491 5 C 0.165 3.835 6 C 0.161 3.839 7 O -0.399 6.399 8 C 0.047 3.953 9 C 0.506 3.494 10 O -0.581 6.581 11 N -0.703 5.703 12 C 0.148 3.852 13 H 0.071 0.929 14 C -0.124 4.124 15 C -0.116 4.116 16 C -0.091 4.091 17 H 0.088 0.912 18 C 0.159 3.841 19 N -0.757 5.757 20 C -0.236 4.236 21 H 0.054 0.946 22 C -0.065 4.065 23 N -0.986 5.986 24 Si 0.957 3.043 25 H -0.275 1.275 26 H -0.298 1.298 27 H -0.250 1.250 28 C -0.109 4.109 29 O -0.210 6.210 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.209 0.791 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.421 0.579 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.027 0.973 45 H 0.367 0.633 46 H 0.257 0.743 47 H 0.076 0.924 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.512 16.778 -29.122 41.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.206 4.206 4 N -0.222 5.222 5 C -0.041 4.041 6 C 0.084 3.916 7 O -0.318 6.318 8 C -0.031 4.031 9 C 0.293 3.707 10 O -0.460 6.460 11 N -0.358 5.358 12 C 0.043 3.957 13 H 0.089 0.911 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.110 4.110 17 H 0.106 0.894 18 C 0.033 3.967 19 N -0.403 5.403 20 C -0.367 4.367 21 H 0.072 0.928 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.783 3.217 25 H -0.201 1.201 26 H -0.225 1.225 27 H -0.175 1.175 28 C -0.148 4.148 29 O -0.097 6.097 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.226 0.774 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.259 0.741 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.045 0.955 45 H 0.200 0.800 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.382 17.578 -28.225 40.650 hybrid contribution -0.453 -1.443 0.234 1.530 sum -23.835 16.135 -27.992 40.150 Atomic orbital electron populations 1.20557 0.80724 1.05399 1.05859 1.24417 0.96834 0.83818 1.04166 1.23602 0.87101 1.02059 1.07874 1.70384 1.24842 1.09991 1.16989 1.26219 0.84783 0.90276 1.02840 1.20809 0.88615 0.97732 0.84420 1.88012 1.46935 1.70759 1.26088 1.22468 0.89991 0.98010 0.92661 1.20948 0.80303 0.77769 0.91656 1.90744 1.50607 1.50886 1.53723 1.45920 1.29966 1.51435 1.08472 1.21470 0.94922 0.97758 0.81576 0.91091 1.22711 0.97683 0.96741 0.99147 1.22490 0.94359 1.00313 0.98231 1.22101 0.93607 0.98185 0.97093 0.89407 1.20875 0.96465 0.84992 0.94370 1.42699 1.38828 1.08484 1.50240 1.19074 1.08076 0.95043 1.14536 0.92804 1.25537 1.00824 0.99841 0.99468 1.69893 1.38511 1.20338 1.34902 0.85385 0.79905 0.78932 0.77435 1.20094 1.22456 1.17473 1.22321 0.93928 0.95763 1.02776 1.84399 1.18132 1.37616 1.69541 0.89847 0.87618 0.86775 0.77432 0.86211 0.86751 0.85917 0.85836 0.74076 0.92653 0.90031 0.92103 0.92415 0.96374 0.95452 0.80015 0.93382 0.90526 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.43 71.23 0.74 0.37 16 2 C -0.04 -0.60 7.39 24.79 0.18 -0.42 16 3 C -0.07 -1.16 11.80 83.39 0.98 -0.18 16 4 N -0.49 -11.07 11.29 -303.84 -3.43 -14.51 16 5 C 0.17 3.30 7.97 88.34 0.70 4.01 16 6 C 0.16 1.96 6.56 71.24 0.47 2.43 16 7 O -0.40 -7.66 9.86 -129.94 -1.28 -8.94 16 8 C 0.05 0.50 6.42 71.23 0.46 0.96 16 9 C 0.51 10.03 7.90 87.65 0.69 10.73 16 10 O -0.58 -18.86 16.15 15.98 0.26 -18.61 16 11 N -0.70 -10.25 5.03 -439.10 -2.21 -12.47 16 12 C 0.15 3.00 3.25 45.72 0.15 3.15 16 13 H 0.07 1.80 7.56 -2.39 -0.02 1.78 16 14 C -0.12 -2.79 6.53 31.72 0.21 -2.58 16 15 C -0.12 -3.10 6.11 31.93 0.20 -2.90 16 16 C -0.09 -2.34 2.90 -9.72 -0.03 -2.36 16 17 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 18 C 0.16 5.77 5.54 86.38 0.48 6.24 16 19 N -0.76 -34.89 5.27 -343.44 -1.81 -36.70 16 20 C -0.24 -13.60 10.47 84.04 0.88 -12.72 16 21 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 22 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 23 N -0.99 -63.73 13.97 21.65 0.30 -63.43 16 24 Si 0.96 45.27 27.74 68.60 1.90 47.17 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.25 -10.61 6.51 99.48 0.65 -9.96 16 28 C -0.11 -2.08 6.14 31.32 0.19 -1.89 16 29 O -0.21 -4.18 10.77 -3.66 -0.04 -4.22 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.42 2.73 8.32 -92.71 -0.77 1.96 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.06 1.72 8.00 -2.39 -0.02 1.70 16 43 H 0.02 0.70 8.06 -2.39 -0.02 0.68 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.37 15.95 5.44 -92.71 -0.50 15.45 16 46 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 47 H 0.08 1.56 7.84 -2.39 -0.02 1.54 16 48 H 0.10 1.35 7.62 -2.39 -0.02 1.33 16 Total: -1.00 -90.16 400.62 0.11 -90.05 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.36 Total: 20.22 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.77 Total: 1.41 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -7.15 Total: -127.10 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.06 Total: -31.76 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Total: -90.16 0.11 -90.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332277784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.073 kcal (2) G-P(sol) polarization free energy of solvation -90.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds