Wall clock time and date at job start Tue Mar 31 2020 20:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.53621 * 2 1 4 4 C 1.52994 * 109.47252 * 300.69748 * 3 2 1 5 5 C 1.53007 * 109.47221 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47054 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00306 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00030 * 180.02562 * 6 5 4 9 9 C 1.47207 * 120.81118 * 0.14238 * 8 6 5 10 10 C 1.53195 * 108.85456 * 126.33789 * 9 8 6 11 11 C 1.53038 * 109.31078 * 54.64814 * 10 9 8 12 12 C 1.53035 * 109.54175 * 298.63655 * 11 10 9 13 13 H 1.09003 * 109.49576 * 301.41349 * 12 11 10 14 14 C 1.50708 * 109.52628 * 181.33267 * 12 11 10 15 15 H 1.08000 * 119.99993 * 240.14800 * 14 12 11 16 16 C 1.37872 * 119.99722 * 60.14623 * 14 12 11 17 17 N 1.31516 * 120.00293 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99837 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47112 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47322 * 119.99996 * 18 16 14 21 21 H 1.48501 * 109.47447 * 239.99748 * 18 16 14 22 22 C 1.46926 * 120.63336 * 180.02562 * 8 6 5 23 23 N 1.47315 * 110.59541 * 237.16908 * 2 1 3 24 24 C 1.34872 * 106.43684 * 241.27177 * 23 2 1 25 25 O 1.21541 * 123.72589 * 180.02562 * 24 23 2 26 26 N 1.33789 * 112.50261 * 0.14200 * 24 23 2 27 27 C 1.34768 * 111.64255 * 359.90633 * 26 24 23 28 28 O 1.21236 * 127.15608 * 179.97438 * 27 26 24 29 29 H 1.09009 * 109.46918 * 59.99596 * 1 2 3 30 30 H 1.08995 * 109.47435 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47182 * 300.00281 * 1 2 3 32 32 H 1.09005 * 109.46716 * 180.69825 * 3 2 1 33 33 H 1.08996 * 109.47323 * 60.70326 * 3 2 1 34 34 H 1.09005 * 109.47197 * 60.00372 * 4 3 2 35 35 H 1.09001 * 109.47793 * 300.00217 * 4 3 2 36 36 H 1.08992 * 109.47110 * 60.00093 * 5 4 3 37 37 H 1.09000 * 109.46956 * 299.99698 * 5 4 3 38 38 H 1.08996 * 109.53610 * 6.53286 * 9 8 6 39 39 H 1.09002 * 109.68003 * 246.22753 * 9 8 6 40 40 H 1.09002 * 109.49713 * 294.70061 * 10 9 8 41 41 H 1.09001 * 109.52547 * 174.62020 * 10 9 8 42 42 H 1.09003 * 109.46001 * 178.60988 * 11 10 9 43 43 H 1.09004 * 109.46331 * 58.66047 * 11 10 9 44 44 H 0.97005 * 120.00095 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.58861 * 113.82042 * 22 8 6 46 46 H 1.08996 * 109.58519 * 353.53933 * 22 8 6 47 47 H 0.96998 * 126.69245 * 61.27463 * 23 2 1 48 48 H 0.96998 * 124.18124 * 179.87834 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 1.5561 2.1686 -1.2403 5 6 2.0933 3.6013 -1.2406 6 6 1.5898 4.3263 -2.4620 7 8 0.8723 3.7535 -3.2545 8 7 1.9376 5.6110 -2.6743 9 6 2.8110 6.3222 -1.7264 10 6 3.9969 6.9142 -2.4944 11 6 3.4745 7.7842 -3.6399 12 6 2.6559 6.9231 -4.6044 13 1 3.2789 6.1160 -4.9898 14 6 2.1690 7.7734 -5.7495 15 1 1.1096 7.8815 -5.9295 16 6 3.0760 8.4132 -6.5673 17 7 4.3661 8.2819 -6.3478 18 14 2.4726 9.4676 -7.9862 19 1 0.9880 9.4536 -8.0169 20 1 2.9503 10.8620 -7.8049 21 1 2.9997 8.9262 -9.2646 22 6 1.4543 6.3314 -3.8601 23 7 2.0482 -0.7476 -1.1587 24 6 2.7645 -1.7759 -0.6601 25 8 3.3356 -2.5977 -1.3499 26 7 2.7743 -1.7920 0.6776 27 6 2.0633 -0.7694 1.1923 28 8 1.8864 -0.5174 2.3649 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.1565 1.4124 -0.0125 33 1 1.7233 1.9494 0.8962 34 1 0.4663 2.1889 -1.2278 35 1 1.8995 1.6520 -2.1366 36 1 3.1830 3.5806 -1.2534 37 1 1.7501 4.1182 -0.3445 38 1 3.1755 5.6243 -0.9726 39 1 2.2522 7.1234 -1.2427 40 1 4.6073 6.1072 -2.8996 41 1 4.5998 7.5232 -1.8207 42 1 4.3162 8.2266 -4.1729 43 1 2.8441 8.5764 -3.2360 44 1 5.0043 8.7318 -6.9235 45 1 0.7836 7.1336 -3.5521 46 1 0.9221 5.6415 -4.5150 47 1 1.9022 -0.5400 -2.0949 48 1 3.2357 -2.4578 1.2112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334471730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:58 Heat of formation + Delta-G solvation = -102.467971 kcal Electronic energy + Delta-G solvation = -29456.175725 eV Core-core repulsion = 25317.967167 eV Total energy + Delta-G solvation = -4138.208557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.87528 -39.73893 -39.03527 -37.44953 -36.80227 -35.52500 -33.65627 -33.30425 -31.44308 -31.11249 -30.18245 -27.79338 -25.69069 -25.08354 -24.27249 -23.29101 -22.04352 -21.66607 -20.84000 -19.77037 -18.60629 -18.28260 -17.12080 -17.04739 -16.72337 -16.27482 -16.21336 -16.03270 -15.82348 -15.36084 -14.80214 -14.65197 -14.57646 -14.08559 -13.65321 -13.58151 -13.34892 -13.02520 -12.89190 -12.74107 -12.45610 -12.36808 -12.15958 -12.00209 -11.84132 -11.60196 -11.24095 -11.03344 -10.92943 -10.88222 -10.80096 -10.74200 -10.53208 -10.34413 -10.00291 -9.90091 -9.85055 -9.52976 -9.32409 -8.86076 -8.43153 -7.95329 -6.06035 -4.13140 1.15570 2.02138 2.61357 2.69756 2.98719 3.25969 3.34277 3.37410 3.43190 3.54142 4.02903 4.19569 4.39309 4.60061 4.75726 4.83974 4.91483 5.10435 5.17687 5.20938 5.23803 5.26147 5.33304 5.41471 5.48486 5.57267 5.58677 5.61627 5.73367 5.90304 6.03050 6.07478 6.27880 6.34602 6.38627 6.42904 6.51756 6.61271 6.75222 6.91270 6.95330 7.11195 7.28423 7.65047 7.75581 7.86707 7.96530 8.03167 8.33019 8.58549 8.90848 9.52151 10.99565 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.002120 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.872317 B =13204.292374 C =13510.811608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.121 3.879 3 C -0.115 4.115 4 C -0.103 4.103 5 C -0.140 4.140 6 C 0.507 3.493 7 O -0.554 6.554 8 N -0.604 5.604 9 C 0.109 3.891 10 C -0.135 4.135 11 C -0.113 4.113 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.116 3.884 23 N -0.715 5.715 24 C 0.704 3.296 25 O -0.544 6.544 26 N -0.681 5.681 27 C 0.534 3.466 28 O -0.464 6.464 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.035 0.965 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.444 0.556 48 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 -13.950 17.424 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.031 3.969 3 C -0.154 4.154 4 C -0.141 4.141 5 C -0.180 4.180 6 C 0.295 3.705 7 O -0.433 6.433 8 N -0.336 5.336 9 C -0.014 4.014 10 C -0.174 4.174 11 C -0.151 4.151 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.005 4.005 23 N -0.381 5.381 24 C 0.403 3.597 25 O -0.417 6.417 26 N -0.352 5.352 27 C 0.319 3.681 28 O -0.332 6.332 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.290 0.710 48 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -3.841 -14.414 17.172 22.746 hybrid contribution 0.147 0.515 -0.884 1.034 sum -3.694 -13.898 16.288 21.728 Atomic orbital electron populations 1.22080 0.89871 1.03779 1.05201 1.21505 0.97554 0.94050 0.83824 1.21868 1.01672 0.90860 1.00986 1.21360 1.01982 0.93898 0.96849 1.21659 1.02506 0.96164 0.97635 1.20483 0.80900 0.81786 0.87315 1.90659 1.38554 1.66404 1.47683 1.48393 1.48499 1.11472 1.25210 1.21790 0.92162 0.96148 0.91278 1.22001 0.96230 1.00187 0.98936 1.21634 1.02064 0.97243 0.94169 1.18978 0.91408 0.94907 0.92612 0.95314 1.21112 0.93059 1.29155 1.11895 0.92431 1.24940 0.94859 0.96537 0.97516 1.69880 1.00646 1.43661 1.38595 0.86527 0.79049 0.80067 0.82308 1.19720 1.21035 1.21005 1.21994 0.98619 0.94806 0.85052 1.45837 1.54301 1.28488 1.09483 1.15954 0.79769 0.82397 0.81597 1.91074 1.48382 1.41444 1.60793 1.44347 1.51290 1.30719 1.08795 1.20801 0.76994 0.80425 0.89891 1.90841 1.56747 1.68980 1.16680 0.89283 0.91474 0.89596 0.90513 0.88966 0.90176 0.90860 0.89036 0.89042 0.91128 0.91883 0.92400 0.92432 0.88649 0.94573 0.93006 0.92783 0.90345 0.71026 0.72613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.60 37.16 0.32 -0.50 16 2 C 0.12 0.79 1.01 -132.09 -0.13 0.65 16 3 C -0.12 -0.74 4.57 -26.74 -0.12 -0.86 16 4 C -0.10 -0.87 4.03 -26.73 -0.11 -0.98 16 5 C -0.14 -1.41 4.06 -27.88 -0.11 -1.52 16 6 C 0.51 8.04 7.70 -10.99 -0.08 7.96 16 7 O -0.55 -10.68 15.39 5.55 0.09 -10.59 16 8 N -0.60 -10.29 2.98 -172.52 -0.51 -10.81 16 9 C 0.11 1.53 6.35 -3.56 -0.02 1.51 16 10 C -0.14 -2.26 6.08 -26.61 -0.16 -2.42 16 11 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 12 C 0.04 0.96 2.25 -91.63 -0.21 0.75 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 14 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.58 11.32 55.43 0.63 -23.96 16 18 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.12 2.41 5.65 -3.69 -0.02 2.39 16 23 N -0.71 -5.12 5.59 -52.84 -0.30 -5.41 16 24 C 0.70 6.44 9.00 -87.71 -0.79 5.65 16 25 O -0.54 -7.06 18.04 5.33 0.10 -6.96 16 26 N -0.68 -4.83 5.70 -15.71 -0.09 -4.92 16 27 C 0.53 4.12 7.48 -10.55 -0.08 4.04 16 28 O -0.46 -4.67 18.02 5.60 0.10 -4.57 16 29 H 0.09 0.47 6.52 -51.92 -0.34 0.13 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.69 6.46 -51.93 -0.34 0.36 16 35 H 0.07 0.69 7.25 -51.93 -0.38 0.31 16 36 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16 37 H 0.09 0.73 7.96 -51.93 -0.41 0.32 16 38 H 0.07 0.75 5.97 -51.93 -0.31 0.44 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 2.37 6.05 -51.93 -0.31 2.05 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.76 7.00 -51.93 -0.36 1.39 16 47 H 0.44 2.88 8.32 -40.82 -0.34 2.54 16 48 H 0.43 2.25 8.96 -40.82 -0.37 1.89 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -33.18 383.20 -8.60 -41.79 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.33 Total: 2.12 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.04 Total: 1.76 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.27 Total: -45.10 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.28 Total: -22.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.18 -8.60 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334471730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.680 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds