Wall clock time and date at job start Tue Mar 31 2020 20:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.53621 * 2 1 4 4 C 1.52994 * 109.47252 * 300.69748 * 3 2 1 5 5 C 1.53007 * 109.47221 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47054 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00306 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00030 * 180.02562 * 6 5 4 9 9 C 1.47207 * 120.81118 * 0.14238 * 8 6 5 10 10 C 1.53195 * 108.85456 * 126.33789 * 9 8 6 11 11 C 1.53038 * 109.31078 * 54.64814 * 10 9 8 12 12 C 1.53035 * 109.54175 * 298.63655 * 11 10 9 13 13 H 1.09003 * 109.49576 * 301.41349 * 12 11 10 14 14 C 1.50708 * 109.52628 * 181.33267 * 12 11 10 15 15 H 1.08000 * 119.99993 * 240.14800 * 14 12 11 16 16 C 1.37872 * 119.99722 * 60.14623 * 14 12 11 17 17 N 1.31516 * 120.00293 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99837 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47112 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47322 * 119.99996 * 18 16 14 21 21 H 1.48501 * 109.47447 * 239.99748 * 18 16 14 22 22 C 1.46926 * 120.63336 * 180.02562 * 8 6 5 23 23 N 1.47315 * 110.59541 * 237.16908 * 2 1 3 24 24 C 1.34872 * 106.43684 * 241.27177 * 23 2 1 25 25 O 1.21541 * 123.72589 * 180.02562 * 24 23 2 26 26 N 1.33789 * 112.50261 * 0.14200 * 24 23 2 27 27 C 1.34768 * 111.64255 * 359.90633 * 26 24 23 28 28 O 1.21236 * 127.15608 * 179.97438 * 27 26 24 29 29 H 1.09009 * 109.46918 * 59.99596 * 1 2 3 30 30 H 1.08995 * 109.47435 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47182 * 300.00281 * 1 2 3 32 32 H 1.09005 * 109.46716 * 180.69825 * 3 2 1 33 33 H 1.08996 * 109.47323 * 60.70326 * 3 2 1 34 34 H 1.09005 * 109.47197 * 60.00372 * 4 3 2 35 35 H 1.09001 * 109.47793 * 300.00217 * 4 3 2 36 36 H 1.08992 * 109.47110 * 60.00093 * 5 4 3 37 37 H 1.09000 * 109.46956 * 299.99698 * 5 4 3 38 38 H 1.08996 * 109.53610 * 6.53286 * 9 8 6 39 39 H 1.09002 * 109.68003 * 246.22753 * 9 8 6 40 40 H 1.09002 * 109.49713 * 294.70061 * 10 9 8 41 41 H 1.09001 * 109.52547 * 174.62020 * 10 9 8 42 42 H 1.09003 * 109.46001 * 178.60988 * 11 10 9 43 43 H 1.09004 * 109.46331 * 58.66047 * 11 10 9 44 44 H 0.97005 * 120.00095 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.58861 * 113.82042 * 22 8 6 46 46 H 1.08996 * 109.58519 * 353.53933 * 22 8 6 47 47 H 0.96998 * 126.69245 * 61.27463 * 23 2 1 48 48 H 0.96998 * 124.18124 * 179.87834 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 1.5561 2.1686 -1.2403 5 6 2.0933 3.6013 -1.2406 6 6 1.5898 4.3263 -2.4620 7 8 0.8723 3.7535 -3.2545 8 7 1.9376 5.6110 -2.6743 9 6 2.8110 6.3222 -1.7264 10 6 3.9969 6.9142 -2.4944 11 6 3.4745 7.7842 -3.6399 12 6 2.6559 6.9231 -4.6044 13 1 3.2789 6.1160 -4.9898 14 6 2.1690 7.7734 -5.7495 15 1 1.1096 7.8815 -5.9295 16 6 3.0760 8.4132 -6.5673 17 7 4.3661 8.2819 -6.3478 18 14 2.4726 9.4676 -7.9862 19 1 0.9880 9.4536 -8.0169 20 1 2.9503 10.8620 -7.8049 21 1 2.9997 8.9262 -9.2646 22 6 1.4543 6.3314 -3.8601 23 7 2.0482 -0.7476 -1.1587 24 6 2.7645 -1.7759 -0.6601 25 8 3.3356 -2.5977 -1.3499 26 7 2.7743 -1.7920 0.6776 27 6 2.0633 -0.7694 1.1923 28 8 1.8864 -0.5174 2.3649 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.1565 1.4124 -0.0125 33 1 1.7233 1.9494 0.8962 34 1 0.4663 2.1889 -1.2278 35 1 1.8995 1.6520 -2.1366 36 1 3.1830 3.5806 -1.2534 37 1 1.7501 4.1182 -0.3445 38 1 3.1755 5.6243 -0.9726 39 1 2.2522 7.1234 -1.2427 40 1 4.6073 6.1072 -2.8996 41 1 4.5998 7.5232 -1.8207 42 1 4.3162 8.2266 -4.1729 43 1 2.8441 8.5764 -3.2360 44 1 5.0043 8.7318 -6.9235 45 1 0.7836 7.1336 -3.5521 46 1 0.9221 5.6415 -4.5150 47 1 1.9022 -0.5400 -2.0949 48 1 3.2357 -2.4578 1.2112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334471730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:57 Heat of formation + Delta-G solvation = -126.976525 kcal Electronic energy + Delta-G solvation = -29457.238495 eV Core-core repulsion = 25317.967167 eV Total energy + Delta-G solvation = -4139.271328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.52062 -41.03198 -39.77138 -38.50643 -37.91261 -36.25815 -35.34176 -34.16024 -33.00588 -32.13514 -31.46657 -28.56690 -27.01525 -26.40767 -25.45005 -24.00128 -23.34077 -22.74099 -21.45982 -21.22893 -19.65822 -19.24671 -18.52161 -17.87726 -17.68577 -17.48813 -16.98740 -16.90137 -16.66860 -16.57349 -16.39817 -15.71658 -15.32941 -15.14078 -15.00935 -14.76437 -14.61579 -14.32025 -13.98503 -13.69688 -13.56331 -13.52764 -13.08612 -12.94491 -12.87911 -12.73680 -12.60313 -12.53806 -12.28864 -11.98090 -11.86298 -11.82143 -11.58140 -11.57295 -11.51151 -11.23999 -11.19638 -10.84026 -10.63061 -10.49762 -10.41524 -9.42111 -8.11375 -6.26300 0.50451 1.38764 1.40897 1.41399 1.52277 1.77554 1.91997 2.09838 2.22121 2.43902 2.89515 3.15295 3.45938 3.63398 3.70890 4.11065 4.14837 4.24124 4.26615 4.29922 4.37586 4.52373 4.58448 4.62849 4.66069 4.71602 4.76694 4.81602 4.89235 4.89995 4.92718 5.02320 5.04274 5.13527 5.14943 5.28531 5.31545 5.42412 5.51572 5.60900 5.62152 5.75939 5.86724 5.94484 6.15200 6.35322 6.35657 6.67396 6.84304 7.08630 7.33014 7.42112 8.92265 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.002120 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.872317 B =13204.292374 C =13510.811608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.124 3.876 3 C -0.106 4.106 4 C -0.099 4.099 5 C -0.130 4.130 6 C 0.499 3.501 7 O -0.596 6.596 8 N -0.612 5.612 9 C 0.111 3.889 10 C -0.129 4.129 11 C -0.108 4.108 12 C 0.041 3.959 13 H -0.015 1.015 14 C -0.536 4.536 15 H 0.051 0.949 16 C 0.016 3.984 17 N -0.914 5.914 18 Si 0.953 3.047 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.283 1.283 22 C 0.130 3.870 23 N -0.706 5.706 24 C 0.705 3.295 25 O -0.586 6.586 26 N -0.671 5.671 27 C 0.540 3.460 28 O -0.484 6.484 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.261 0.739 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.447 0.553 48 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 -13.650 19.995 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.170 4.170 6 C 0.289 3.711 7 O -0.478 6.478 8 N -0.343 5.343 9 C -0.011 4.011 10 C -0.167 4.167 11 C -0.146 4.146 12 C 0.022 3.978 13 H 0.003 0.997 14 C -0.575 4.575 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.779 3.221 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.209 1.209 22 C 0.007 3.993 23 N -0.372 5.372 24 C 0.404 3.596 25 O -0.462 6.462 26 N -0.342 5.342 27 C 0.326 3.674 28 O -0.354 6.354 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.293 0.707 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -4.160 -14.101 19.783 24.648 hybrid contribution 0.230 0.409 -1.720 1.782 sum -3.930 -13.693 18.063 23.005 Atomic orbital electron populations 1.22098 0.88776 1.04102 1.05787 1.21591 0.98273 0.93968 0.82786 1.21803 1.01893 0.90201 1.00553 1.21304 1.01952 0.93162 0.97275 1.21738 1.03415 0.96304 0.95503 1.21600 0.79878 0.81083 0.88514 1.90640 1.40438 1.67106 1.49621 1.48486 1.49191 1.12209 1.24442 1.22023 0.90565 0.97618 0.90878 1.21914 0.97611 0.99345 0.97811 1.21432 1.00310 0.97584 0.95262 1.18879 0.92273 0.93653 0.93035 0.99690 1.21490 0.92908 1.29727 1.13342 0.93042 1.25685 0.95035 0.97731 0.99862 1.70016 1.01503 1.44367 1.39410 0.85577 0.78661 0.78652 0.79193 1.19275 1.20194 1.20935 1.21478 0.96979 0.94467 0.86370 1.45868 1.53447 1.27865 1.09993 1.16029 0.79449 0.82203 0.81880 1.91048 1.50285 1.43120 1.61790 1.44240 1.50972 1.30846 1.08144 1.20863 0.76486 0.80258 0.89743 1.90842 1.57512 1.69508 1.17534 0.89074 0.91391 0.88588 0.90049 0.87117 0.90293 0.92322 0.87219 0.85531 0.86249 0.90102 0.93748 0.89358 0.92241 0.94515 0.92985 0.92399 0.93075 0.70671 0.71678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.60 71.98 0.62 -0.65 16 2 C 0.12 1.32 1.01 2.98 0.00 1.32 16 3 C -0.11 -0.98 4.57 30.59 0.14 -0.84 16 4 C -0.10 -1.39 4.03 30.59 0.12 -1.26 16 5 C -0.13 -2.12 4.06 29.85 0.12 -1.99 16 6 C 0.50 14.98 7.70 87.66 0.68 15.66 16 7 O -0.60 -23.04 15.39 -3.05 -0.05 -23.09 16 8 N -0.61 -19.97 2.98 -818.10 -2.44 -22.41 16 9 C 0.11 2.70 6.35 86.31 0.55 3.25 16 10 C -0.13 -4.05 6.08 30.67 0.19 -3.86 16 11 C -0.11 -4.70 4.96 30.62 0.15 -4.55 16 12 C 0.04 2.02 2.25 -11.45 -0.03 1.99 16 13 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 14 C -0.54 -29.46 8.56 25.60 0.22 -29.25 16 15 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 16 C 0.02 0.87 5.30 84.65 0.45 1.32 16 17 N -0.91 -52.04 11.32 21.45 0.24 -51.79 16 18 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 C 0.13 5.50 5.65 86.38 0.49 5.99 16 23 N -0.71 -9.17 5.59 -439.33 -2.46 -11.63 16 24 C 0.71 12.27 9.00 179.33 1.61 13.88 16 25 O -0.59 -15.18 18.04 -3.85 -0.07 -15.25 16 26 N -0.67 -8.60 5.70 -440.85 -2.51 -11.12 16 27 C 0.54 7.17 7.48 87.94 0.66 7.83 16 28 O -0.48 -8.63 18.02 -2.89 -0.05 -8.68 16 29 H 0.09 0.77 6.52 -2.38 -0.02 0.76 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 1.16 6.46 -2.38 -0.02 1.14 16 35 H 0.06 1.01 7.25 -2.39 -0.02 0.99 16 36 H 0.11 1.48 7.69 -2.39 -0.02 1.46 16 37 H 0.13 1.26 7.96 -2.39 -0.02 1.24 16 38 H 0.12 1.81 5.97 -2.39 -0.01 1.80 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.06 3.03 6.05 -2.39 -0.01 3.01 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 45 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.05 2.40 7.00 -2.39 -0.02 2.39 16 47 H 0.45 5.42 8.32 -92.71 -0.77 4.65 16 48 H 0.44 4.09 8.96 -92.71 -0.83 3.26 16 Total: -1.00 -76.62 383.20 0.06 -76.56 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.60 Total: 13.15 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.97 Total: 8.82 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -7.17 Total: -96.95 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.17 Total: -47.02 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -76.62 0.06 -76.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334471730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.416 kcal (2) G-P(sol) polarization free energy of solvation -76.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds