Wall clock time and date at job start Tue Mar 31 2020 20:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.53314 * 2 1 4 4 C 1.53002 * 109.47026 * 62.17334 * 3 2 1 5 5 C 1.52998 * 109.47314 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47285 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00018 * 179.97438 * 6 5 4 9 9 C 1.46928 * 120.62756 * 359.72768 * 8 6 5 10 10 C 1.52766 * 109.00371 * 233.57900 * 9 8 6 11 11 C 1.53046 * 109.38470 * 305.58844 * 10 9 8 12 12 C 1.53046 * 109.53617 * 61.23871 * 11 10 9 13 13 H 1.09000 * 109.52104 * 58.60103 * 12 11 10 14 14 C 1.50693 * 109.49494 * 178.68358 * 12 11 10 15 15 H 1.08004 * 119.99799 * 119.84264 * 14 12 11 16 16 C 1.37875 * 120.00187 * 299.83718 * 14 12 11 17 17 N 1.31515 * 119.99970 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00173 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47153 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46942 * 120.00137 * 18 16 14 21 21 H 1.48495 * 109.47479 * 240.00430 * 18 16 14 22 22 C 1.46922 * 120.62950 * 180.02562 * 8 6 5 23 23 N 1.47308 * 110.59573 * 122.99926 * 2 1 3 24 24 C 1.34526 * 106.61861 * 118.52769 * 23 2 1 25 25 O 1.21538 * 123.77268 * 179.97438 * 24 23 2 26 26 N 1.33796 * 112.45867 * 359.74688 * 24 23 2 27 27 C 1.34772 * 111.64406 * 0.43741 * 26 24 23 28 28 O 1.21233 * 127.16267 * 179.85831 * 27 26 24 29 29 H 1.08995 * 109.47516 * 182.12271 * 1 2 3 30 30 H 1.08998 * 109.47406 * 302.12917 * 1 2 3 31 31 H 1.09005 * 109.47034 * 62.12948 * 1 2 3 32 32 H 1.09003 * 109.46807 * 182.16555 * 3 2 1 33 33 H 1.08994 * 109.47722 * 302.17219 * 3 2 1 34 34 H 1.09002 * 109.47087 * 299.99654 * 4 3 2 35 35 H 1.09003 * 109.47169 * 59.99406 * 4 3 2 36 36 H 1.09002 * 109.46964 * 299.99978 * 5 4 3 37 37 H 1.09003 * 109.47284 * 59.99725 * 5 4 3 38 38 H 1.08996 * 109.59015 * 353.41387 * 9 8 6 39 39 H 1.08996 * 109.58824 * 113.84218 * 9 8 6 40 40 H 1.08997 * 109.56468 * 185.55645 * 10 9 8 41 41 H 1.08994 * 109.38636 * 65.51503 * 10 9 8 42 42 H 1.09001 * 109.45634 * 301.22457 * 11 10 9 43 43 H 1.08990 * 109.46101 * 181.26191 * 11 10 9 44 44 H 0.97006 * 119.99921 * 179.97438 * 17 16 14 45 45 H 1.09004 * 109.58806 * 246.15840 * 22 8 6 46 46 H 1.09005 * 109.58652 * 6.44328 * 22 8 6 47 47 H 0.96997 * 126.68895 * 298.54194 * 23 2 1 48 48 H 0.96993 * 124.18333 * 180.30845 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.6150 2.1466 1.2757 5 6 2.1521 3.5792 1.2761 6 6 1.7067 4.2824 2.5323 7 8 1.0269 3.6953 3.3474 8 7 2.0645 5.5633 2.7506 9 6 2.8936 6.2854 1.7759 10 6 4.1115 6.8661 2.4922 11 6 3.6465 7.7179 3.6757 12 6 2.8745 6.8415 4.6648 13 1 3.5142 6.0280 5.0069 14 6 2.4450 7.6740 5.8452 15 1 1.3956 7.7800 6.0779 16 6 3.3914 8.3002 6.6282 17 7 4.6692 8.1714 6.3446 18 14 2.8589 9.3328 8.0910 19 1 1.3775 9.3184 8.1939 20 1 3.4464 8.7708 9.3337 21 1 3.3293 10.7294 7.9086 22 6 1.6385 6.2621 3.9708 23 7 2.0482 -0.7510 1.1565 24 6 2.7599 -1.7791 0.6601 25 8 3.3290 -2.6022 1.3498 26 7 2.7671 -1.7969 -0.6777 27 6 2.0633 -0.7692 -1.1924 28 8 1.8887 -0.5156 -2.3650 29 1 -0.3634 -1.0269 0.0381 30 1 -0.3634 0.5465 0.8702 31 1 -0.3633 0.4804 -0.9085 32 1 3.1558 1.4128 -0.0388 33 1 1.6818 1.9650 -0.8698 34 1 0.5258 2.1665 1.3146 35 1 1.9999 1.6143 2.1456 36 1 3.2413 3.5588 1.2374 37 1 1.7675 4.1117 0.4062 38 1 3.2230 5.5985 0.9964 39 1 2.3141 7.0947 1.3317 40 1 4.6811 7.4858 1.7997 41 1 4.7403 6.0528 2.8542 42 1 2.9981 8.5166 3.3156 43 1 4.5135 8.1510 4.1742 44 1 5.3350 8.6123 6.8952 45 1 0.9543 7.0695 3.7095 46 1 1.1377 5.5602 4.6378 47 1 1.9042 -0.5446 2.0932 48 1 3.2239 -2.4657 -1.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334471733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:02 Heat of formation + Delta-G solvation = -102.101657 kcal Electronic energy + Delta-G solvation = -29468.521069 eV Core-core repulsion = 25330.328396 eV Total energy + Delta-G solvation = -4138.192673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.89369 -39.75881 -39.03756 -37.45333 -36.81757 -35.51925 -33.66687 -33.30750 -31.45270 -31.14026 -30.20762 -27.80008 -25.68089 -25.08348 -24.27338 -23.29648 -22.03071 -21.66756 -20.86835 -19.77351 -18.60681 -18.27955 -17.12409 -17.04368 -16.72834 -16.27926 -16.20676 -16.01999 -15.84270 -15.36274 -14.81061 -14.65224 -14.57765 -14.09222 -13.64719 -13.59067 -13.35048 -13.02398 -12.89772 -12.75511 -12.46941 -12.37728 -12.15477 -12.00777 -11.83879 -11.60409 -11.24133 -11.03318 -10.93212 -10.88037 -10.79599 -10.74211 -10.53008 -10.34000 -10.00454 -9.90586 -9.85256 -9.53142 -9.32446 -8.86065 -8.43161 -7.95448 -6.06071 -4.13163 1.15993 2.02944 2.62286 2.70050 2.98428 3.25980 3.34278 3.37407 3.43054 3.54110 4.02650 4.19371 4.39286 4.59873 4.75610 4.84429 4.91251 5.10133 5.16880 5.20651 5.23708 5.25847 5.33124 5.41364 5.48089 5.57513 5.58824 5.61436 5.74541 5.90108 6.02894 6.07432 6.27779 6.34655 6.38522 6.42985 6.52553 6.61153 6.75359 6.91536 6.95505 7.11209 7.28323 7.65016 7.76194 7.86678 7.96457 8.03130 8.32988 8.58425 8.90816 9.52119 10.99535 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.002129 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.913616 B =13151.441746 C =13476.099235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 C -0.115 4.115 4 C -0.103 4.103 5 C -0.140 4.140 6 C 0.507 3.493 7 O -0.554 6.554 8 N -0.603 5.603 9 C 0.109 3.891 10 C -0.136 4.136 11 C -0.113 4.113 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.117 3.883 23 N -0.714 5.714 24 C 0.704 3.296 25 O -0.544 6.544 26 N -0.681 5.681 27 C 0.534 3.466 28 O -0.464 6.464 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.095 0.905 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.444 0.556 48 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 -13.633 -17.530 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.031 3.969 3 C -0.153 4.153 4 C -0.141 4.141 5 C -0.180 4.180 6 C 0.295 3.705 7 O -0.433 6.433 8 N -0.335 5.335 9 C -0.014 4.014 10 C -0.174 4.174 11 C -0.151 4.151 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.004 4.004 23 N -0.380 5.380 24 C 0.403 3.597 25 O -0.418 6.418 26 N -0.352 5.352 27 C 0.319 3.681 28 O -0.333 6.333 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.290 0.710 48 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -4.710 -14.104 -17.274 22.792 hybrid contribution 0.191 0.504 0.899 1.048 sum -4.519 -13.600 -16.375 21.760 Atomic orbital electron populations 1.22081 0.89857 1.03840 1.05163 1.21510 0.97545 0.94039 0.83821 1.21862 1.01818 0.90917 1.00753 1.21355 1.02220 0.94066 0.96459 1.21660 1.02737 0.96288 0.97272 1.20493 0.80357 0.81737 0.87934 1.90658 1.39779 1.65368 1.47486 1.48330 1.50763 1.11855 1.22566 1.21660 0.92833 0.96021 0.90871 1.21933 0.96085 1.00238 0.99171 1.21634 1.02480 0.97318 0.93659 1.18963 0.91228 0.94934 0.92807 0.95316 1.21109 0.93154 1.30076 1.10890 0.92431 1.24942 0.94894 0.96474 0.97542 1.69881 0.99935 1.43926 1.39034 0.86525 0.78865 0.79960 0.82598 1.19719 1.21009 1.21029 1.21982 0.99121 0.95178 0.84145 1.45765 1.54374 1.28278 1.09561 1.15871 0.79789 0.82451 0.81604 1.91075 1.48457 1.41451 1.60775 1.44359 1.51717 1.30294 1.08830 1.20803 0.76968 0.80473 0.89889 1.90839 1.56623 1.69123 1.16688 0.91423 0.89303 0.89615 0.90547 0.88927 0.90206 0.90846 0.89027 0.89026 0.91097 0.91934 0.92415 0.92425 0.94571 0.88645 0.93006 0.92777 0.90324 0.71039 0.72632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.72 37.16 0.32 -0.49 16 2 C 0.12 0.79 1.00 -132.09 -0.13 0.66 16 3 C -0.11 -0.73 4.56 -26.73 -0.12 -0.86 16 4 C -0.10 -0.87 4.08 -26.73 -0.11 -0.98 16 5 C -0.14 -1.41 4.05 -27.88 -0.11 -1.52 16 6 C 0.51 8.04 7.70 -10.98 -0.08 7.95 16 7 O -0.55 -10.67 15.39 5.55 0.09 -10.59 16 8 N -0.60 -10.28 2.98 -173.05 -0.52 -10.80 16 9 C 0.11 1.54 6.31 -3.93 -0.02 1.51 16 10 C -0.14 -2.27 6.07 -26.83 -0.16 -2.44 16 11 C -0.11 -2.44 4.96 -26.68 -0.13 -2.57 16 12 C 0.04 0.95 2.25 -91.68 -0.21 0.74 16 13 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 14 C -0.51 -13.64 8.56 -34.44 -0.29 -13.93 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 18 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.12 2.42 5.66 -3.74 -0.02 2.40 16 23 N -0.71 -5.15 5.52 -52.93 -0.29 -5.44 16 24 C 0.70 6.48 8.99 -88.02 -0.79 5.69 16 25 O -0.54 -7.11 18.04 5.33 0.10 -7.01 16 26 N -0.68 -4.87 5.70 -15.79 -0.09 -4.96 16 27 C 0.53 4.13 7.48 -10.55 -0.08 4.05 16 28 O -0.46 -4.68 18.02 5.60 0.10 -4.58 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.46 6.49 -51.93 -0.34 0.12 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.69 6.48 -51.93 -0.34 0.35 16 35 H 0.07 0.69 7.15 -51.93 -0.37 0.32 16 36 H 0.09 0.84 7.68 -51.93 -0.40 0.45 16 37 H 0.09 0.73 7.95 -51.93 -0.41 0.32 16 38 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 2.37 6.05 -51.93 -0.31 2.05 16 44 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.76 7.00 -51.93 -0.36 1.40 16 47 H 0.44 2.92 8.24 -40.82 -0.34 2.59 16 48 H 0.43 2.27 8.96 -40.82 -0.37 1.91 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -33.20 382.96 -8.60 -41.80 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.31 Total: 2.17 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.04 Total: 1.80 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.27 Total: -45.16 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.28 Total: -22.17 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.20 -8.60 -41.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334471733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.304 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds