Wall clock time and date at job start Tue Mar 31 2020 20:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.53314 * 2 1 4 4 C 1.53002 * 109.47026 * 62.17334 * 3 2 1 5 5 C 1.52998 * 109.47314 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47285 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00018 * 179.97438 * 6 5 4 9 9 C 1.46928 * 120.62756 * 359.72768 * 8 6 5 10 10 C 1.52766 * 109.00371 * 233.57900 * 9 8 6 11 11 C 1.53046 * 109.38470 * 305.58844 * 10 9 8 12 12 C 1.53046 * 109.53617 * 61.23871 * 11 10 9 13 13 H 1.09000 * 109.52104 * 58.60103 * 12 11 10 14 14 C 1.50693 * 109.49494 * 178.68358 * 12 11 10 15 15 H 1.08004 * 119.99799 * 119.84264 * 14 12 11 16 16 C 1.37875 * 120.00187 * 299.83718 * 14 12 11 17 17 N 1.31515 * 119.99970 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00173 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47153 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46942 * 120.00137 * 18 16 14 21 21 H 1.48495 * 109.47479 * 240.00430 * 18 16 14 22 22 C 1.46922 * 120.62950 * 180.02562 * 8 6 5 23 23 N 1.47308 * 110.59573 * 122.99926 * 2 1 3 24 24 C 1.34526 * 106.61861 * 118.52769 * 23 2 1 25 25 O 1.21538 * 123.77268 * 179.97438 * 24 23 2 26 26 N 1.33796 * 112.45867 * 359.74688 * 24 23 2 27 27 C 1.34772 * 111.64406 * 0.43741 * 26 24 23 28 28 O 1.21233 * 127.16267 * 179.85831 * 27 26 24 29 29 H 1.08995 * 109.47516 * 182.12271 * 1 2 3 30 30 H 1.08998 * 109.47406 * 302.12917 * 1 2 3 31 31 H 1.09005 * 109.47034 * 62.12948 * 1 2 3 32 32 H 1.09003 * 109.46807 * 182.16555 * 3 2 1 33 33 H 1.08994 * 109.47722 * 302.17219 * 3 2 1 34 34 H 1.09002 * 109.47087 * 299.99654 * 4 3 2 35 35 H 1.09003 * 109.47169 * 59.99406 * 4 3 2 36 36 H 1.09002 * 109.46964 * 299.99978 * 5 4 3 37 37 H 1.09003 * 109.47284 * 59.99725 * 5 4 3 38 38 H 1.08996 * 109.59015 * 353.41387 * 9 8 6 39 39 H 1.08996 * 109.58824 * 113.84218 * 9 8 6 40 40 H 1.08997 * 109.56468 * 185.55645 * 10 9 8 41 41 H 1.08994 * 109.38636 * 65.51503 * 10 9 8 42 42 H 1.09001 * 109.45634 * 301.22457 * 11 10 9 43 43 H 1.08990 * 109.46101 * 181.26191 * 11 10 9 44 44 H 0.97006 * 119.99921 * 179.97438 * 17 16 14 45 45 H 1.09004 * 109.58806 * 246.15840 * 22 8 6 46 46 H 1.09005 * 109.58652 * 6.44328 * 22 8 6 47 47 H 0.96997 * 126.68895 * 298.54194 * 23 2 1 48 48 H 0.96993 * 124.18333 * 180.30845 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.6150 2.1466 1.2757 5 6 2.1521 3.5792 1.2761 6 6 1.7067 4.2824 2.5323 7 8 1.0269 3.6953 3.3474 8 7 2.0645 5.5633 2.7506 9 6 2.8936 6.2854 1.7759 10 6 4.1115 6.8661 2.4922 11 6 3.6465 7.7179 3.6757 12 6 2.8745 6.8415 4.6648 13 1 3.5142 6.0280 5.0069 14 6 2.4450 7.6740 5.8452 15 1 1.3956 7.7800 6.0779 16 6 3.3914 8.3002 6.6282 17 7 4.6692 8.1714 6.3446 18 14 2.8589 9.3328 8.0910 19 1 1.3775 9.3184 8.1939 20 1 3.4464 8.7708 9.3337 21 1 3.3293 10.7294 7.9086 22 6 1.6385 6.2621 3.9708 23 7 2.0482 -0.7510 1.1565 24 6 2.7599 -1.7791 0.6601 25 8 3.3290 -2.6022 1.3498 26 7 2.7671 -1.7969 -0.6777 27 6 2.0633 -0.7692 -1.1924 28 8 1.8887 -0.5156 -2.3650 29 1 -0.3634 -1.0269 0.0381 30 1 -0.3634 0.5465 0.8702 31 1 -0.3633 0.4804 -0.9085 32 1 3.1558 1.4128 -0.0388 33 1 1.6818 1.9650 -0.8698 34 1 0.5258 2.1665 1.3146 35 1 1.9999 1.6143 2.1456 36 1 3.2413 3.5588 1.2374 37 1 1.7675 4.1117 0.4062 38 1 3.2230 5.5985 0.9964 39 1 2.3141 7.0947 1.3317 40 1 4.6811 7.4858 1.7997 41 1 4.7403 6.0528 2.8542 42 1 2.9981 8.5166 3.3156 43 1 4.5135 8.1510 4.1742 44 1 5.3350 8.6123 6.8952 45 1 0.9543 7.0695 3.7095 46 1 1.1377 5.5602 4.6378 47 1 1.9042 -0.5446 2.0932 48 1 3.2239 -2.4657 -1.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334471733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:01 Heat of formation + Delta-G solvation = -126.607585 kcal Electronic energy + Delta-G solvation = -29469.583726 eV Core-core repulsion = 25330.328396 eV Total energy + Delta-G solvation = -4139.255329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.54126 -41.05287 -39.77544 -38.52161 -37.91551 -36.25394 -35.35441 -34.16375 -33.01276 -32.16040 -31.49553 -28.57473 -27.01622 -26.39777 -25.45036 -24.01056 -23.34104 -22.73235 -21.48309 -21.23480 -19.65601 -19.24961 -18.52360 -17.87968 -17.69058 -17.48988 -16.98919 -16.89686 -16.66529 -16.58215 -16.40236 -15.72702 -15.33380 -15.14108 -15.01856 -14.76344 -14.62012 -14.32020 -13.99509 -13.70168 -13.56661 -13.52107 -13.09882 -12.94772 -12.88037 -12.73547 -12.59676 -12.53976 -12.28873 -11.98436 -11.86058 -11.82341 -11.58356 -11.57643 -11.51038 -11.24063 -11.19401 -10.84131 -10.63227 -10.50481 -10.41563 -9.42165 -8.11467 -6.26380 0.50751 1.38734 1.41262 1.41492 1.52238 1.77305 1.92516 2.10141 2.22291 2.43875 2.89020 3.15219 3.45710 3.64019 3.70458 4.10749 4.14905 4.24503 4.26388 4.30223 4.37571 4.52316 4.58663 4.63254 4.65875 4.71784 4.76563 4.81622 4.89239 4.90011 4.92719 5.02191 5.04433 5.13179 5.14825 5.28569 5.31778 5.42475 5.51547 5.60926 5.62265 5.75313 5.87233 5.94343 6.15129 6.35240 6.35586 6.67336 6.84223 7.08721 7.32933 7.42028 8.92188 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.002129 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.913616 B =13151.441746 C =13476.099235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.124 3.876 3 C -0.106 4.106 4 C -0.099 4.099 5 C -0.130 4.130 6 C 0.498 3.502 7 O -0.596 6.596 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.129 4.129 11 C -0.107 4.107 12 C 0.041 3.959 13 H -0.015 1.015 14 C -0.536 4.536 15 H 0.051 0.949 16 C 0.016 3.984 17 N -0.914 5.914 18 Si 0.953 3.047 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.276 1.276 22 C 0.130 3.870 23 N -0.706 5.706 24 C 0.705 3.295 25 O -0.587 6.587 26 N -0.672 5.672 27 C 0.540 3.460 28 O -0.484 6.484 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.036 0.964 43 H 0.059 0.941 44 H 0.261 0.739 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.447 0.553 48 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -13.274 -20.112 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.034 3.966 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.170 4.170 6 C 0.289 3.711 7 O -0.478 6.478 8 N -0.343 5.343 9 C -0.011 4.011 10 C -0.167 4.167 11 C -0.146 4.146 12 C 0.021 3.979 13 H 0.003 0.997 14 C -0.575 4.575 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.779 3.221 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.202 1.202 22 C 0.007 3.993 23 N -0.371 5.371 24 C 0.404 3.596 25 O -0.464 6.464 26 N -0.343 5.343 27 C 0.326 3.674 28 O -0.354 6.354 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.293 0.707 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -5.172 -13.731 -19.896 24.722 hybrid contribution 0.321 0.379 1.738 1.807 sum -4.852 -13.353 -18.158 23.056 Atomic orbital electron populations 1.22101 0.88687 1.04151 1.05814 1.21605 0.98317 0.93943 0.82738 1.21801 1.02101 0.90302 1.00225 1.21298 1.02150 0.93293 0.96963 1.21740 1.03838 0.96538 0.94841 1.21611 0.79219 0.80982 0.89301 1.90639 1.41626 1.66083 1.49444 1.48421 1.51468 1.12641 1.21739 1.21896 0.91186 0.97455 0.90578 1.21847 0.97583 0.99454 0.97857 1.21432 1.00595 0.97590 0.94956 1.18865 0.92102 0.93675 0.93222 0.99701 1.21489 0.92991 1.30619 1.12374 0.93038 1.25687 0.94968 0.97610 1.00049 1.70017 1.00731 1.44626 1.39921 0.85575 0.78579 0.78616 0.79306 1.19272 1.20949 1.20178 1.21465 0.97357 0.94784 0.85651 1.45799 1.53515 1.27662 1.10075 1.15946 0.79470 0.82262 0.81891 1.91049 1.50377 1.43141 1.61783 1.44252 1.51402 1.30440 1.08172 1.20872 0.76454 0.80303 0.89754 1.90840 1.57386 1.69643 1.17539 0.91363 0.89010 0.88584 0.90134 0.86988 0.90281 0.92367 0.87232 0.85478 0.86215 0.90155 0.89336 0.93781 0.94511 0.92236 0.92985 0.92391 0.93041 0.70710 0.71710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.72 71.98 0.63 -0.61 16 2 C 0.12 1.31 1.00 2.99 0.00 1.32 16 3 C -0.11 -0.97 4.56 30.59 0.14 -0.84 16 4 C -0.10 -1.39 4.08 30.59 0.12 -1.26 16 5 C -0.13 -2.11 4.05 29.85 0.12 -1.99 16 6 C 0.50 14.96 7.70 87.66 0.67 15.64 16 7 O -0.60 -23.02 15.39 -3.04 -0.05 -23.07 16 8 N -0.61 -19.95 2.98 -819.81 -2.44 -22.39 16 9 C 0.11 2.70 6.31 86.22 0.54 3.24 16 10 C -0.13 -4.07 6.07 30.53 0.19 -3.89 16 11 C -0.11 -4.70 4.96 30.63 0.15 -4.55 16 12 C 0.04 2.01 2.25 -11.48 -0.03 1.98 16 13 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 14 C -0.54 -29.47 8.56 25.60 0.22 -29.25 16 15 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 16 C 0.02 0.87 5.30 84.65 0.45 1.32 16 17 N -0.91 -52.05 11.32 21.45 0.24 -51.81 16 18 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 C 0.13 5.52 5.66 86.35 0.49 6.00 16 23 N -0.71 -9.25 5.52 -439.81 -2.43 -11.68 16 24 C 0.71 12.39 8.99 179.44 1.61 14.00 16 25 O -0.59 -15.34 18.04 -3.84 -0.07 -15.41 16 26 N -0.67 -8.69 5.70 -441.11 -2.52 -11.21 16 27 C 0.54 7.18 7.48 87.94 0.66 7.84 16 28 O -0.48 -8.63 18.02 -2.88 -0.05 -8.68 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.74 6.49 -2.39 -0.02 0.73 16 31 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.08 1.15 6.48 -2.39 -0.02 1.13 16 35 H 0.06 1.01 7.15 -2.39 -0.02 0.99 16 36 H 0.11 1.48 7.68 -2.39 -0.02 1.46 16 37 H 0.13 1.26 7.95 -2.39 -0.02 1.24 16 38 H 0.12 1.82 5.93 -2.39 -0.01 1.81 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 43 H 0.06 3.03 6.05 -2.39 -0.01 3.02 16 44 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 45 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.05 2.42 7.00 -2.38 -0.02 2.40 16 47 H 0.45 5.52 8.24 -92.71 -0.76 4.76 16 48 H 0.44 4.15 8.96 -92.71 -0.83 3.32 16 Total: -1.00 -76.72 382.96 0.10 -76.62 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -0.59 Total: 13.24 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.97 Total: 8.96 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -7.14 Total: -97.10 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -0.17 Total: -47.16 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.72 0.10 -76.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334471733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.990 kcal (2) G-P(sol) polarization free energy of solvation -76.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds