Wall clock time and date at job start Tue Mar 31 2020 20:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 110.53206 * 2 1 4 4 C 1.52999 * 109.47062 * 302.82955 * 3 2 1 5 5 C 1.52997 * 109.47177 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47503 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99640 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00312 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.63138 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77460 * 233.58621 * 9 8 6 11 11 C 1.53038 * 109.31614 * 305.36602 * 10 9 8 12 12 C 1.53045 * 109.53969 * 61.36259 * 11 10 9 13 13 H 1.08997 * 109.49270 * 58.59043 * 12 11 10 14 14 C 1.50697 * 109.49626 * 178.65308 * 12 11 10 15 15 H 1.08001 * 119.99652 * 120.00630 * 14 12 11 16 16 C 1.37875 * 120.00373 * 300.00065 * 14 12 11 17 17 N 1.31514 * 120.00203 * 180.02562 * 16 14 12 18 18 Si 1.86807 * 119.99786 * 0.02562 * 16 14 12 19 19 H 1.48492 * 109.46993 * 89.99967 * 18 16 14 20 20 H 1.48498 * 109.46797 * 210.00053 * 18 16 14 21 21 H 1.48505 * 109.46781 * 329.99670 * 18 16 14 22 22 C 1.46925 * 120.63109 * 179.72131 * 8 6 5 23 23 N 1.47308 * 110.60223 * 237.00588 * 2 1 3 24 24 C 1.34526 * 106.61861 * 241.47074 * 23 2 1 25 25 O 1.21538 * 123.77268 * 179.97438 * 24 23 2 26 26 N 1.33796 * 112.45867 * 359.74688 * 24 23 2 27 27 C 1.34772 * 111.64406 * 0.43741 * 26 24 23 28 28 O 1.21233 * 127.16267 * 179.85831 * 27 26 24 29 29 H 1.08999 * 109.46970 * 297.87160 * 1 2 3 30 30 H 1.08997 * 109.47266 * 57.87454 * 1 2 3 31 31 H 1.09005 * 109.46546 * 177.87435 * 1 2 3 32 32 H 1.09001 * 109.47386 * 62.82758 * 3 2 1 33 33 H 1.08997 * 109.47368 * 182.83036 * 3 2 1 34 34 H 1.08998 * 109.47356 * 300.00131 * 4 3 2 35 35 H 1.09003 * 109.47295 * 60.00130 * 4 3 2 36 36 H 1.08998 * 109.47238 * 300.00390 * 5 4 3 37 37 H 1.09003 * 109.46748 * 59.99983 * 5 4 3 38 38 H 1.09000 * 109.58475 * 353.37572 * 9 8 6 39 39 H 1.08997 * 109.58472 * 113.79918 * 9 8 6 40 40 H 1.08998 * 109.49738 * 65.31529 * 10 9 8 41 41 H 1.08998 * 109.49478 * 185.37781 * 10 9 8 42 42 H 1.08998 * 109.46453 * 181.38814 * 11 10 9 43 43 H 1.09010 * 109.45620 * 301.34658 * 11 10 9 44 44 H 0.96992 * 119.99924 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.59063 * 246.20045 * 22 8 6 46 46 H 1.09003 * 109.58586 * 6.62595 * 22 8 6 47 47 H 0.96997 * 126.68895 * 61.48500 * 23 2 1 48 48 H 0.96993 * 124.18333 * 180.30845 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4329 0.0000 4 6 1.5132 2.1847 -1.2121 5 6 2.0493 3.6177 -1.2118 6 6 1.5047 4.3582 -2.4060 7 8 0.7605 3.7952 -3.1808 8 7 1.8444 5.6458 -2.6130 9 6 2.7453 6.3411 -1.6835 10 6 2.0688 7.6332 -1.2151 11 6 1.6622 8.4628 -2.4351 12 6 0.6609 7.6726 -3.2808 13 1 -0.2122 7.4274 -2.6762 14 6 0.2360 8.5034 -4.4641 15 1 0.4159 8.1460 -5.4673 16 6 -0.3825 9.7196 -4.2662 17 7 -0.7538 10.4443 -5.2989 18 14 -0.6933 10.3380 -2.5311 19 1 0.4721 11.1368 -2.0742 20 1 -1.9111 11.1876 -2.5191 21 1 -0.8879 9.1810 -1.6207 22 6 1.3264 6.3791 -3.7760 23 7 2.0484 -0.7509 -1.1565 24 6 2.7601 -1.7789 -0.6601 25 8 3.3286 -2.6024 -1.3498 26 7 2.7761 -1.7907 0.6777 27 6 2.0634 -0.7692 1.1924 28 8 1.8894 -0.5152 2.3650 29 1 -0.3633 0.4804 0.9085 30 1 -0.3634 0.5465 -0.8703 31 1 -0.3632 -1.0270 -0.0381 32 1 1.7546 1.9378 0.9142 33 1 3.1553 1.4132 -0.0507 34 1 1.8252 1.6799 -2.1264 35 1 0.4245 2.2045 -1.1614 36 1 1.7369 4.1223 -0.2975 37 1 3.1380 3.5983 -1.2623 38 1 2.9475 5.7020 -0.8240 39 1 3.6796 6.5810 -2.1910 40 1 1.1824 7.3883 -0.6299 41 1 2.7637 8.2055 -0.6005 42 1 1.2027 9.3942 -2.1042 43 1 2.5458 8.6864 -3.0330 44 1 -1.1886 11.3001 -5.1597 45 1 2.1476 6.6221 -4.4503 46 1 0.5921 5.7651 -4.2976 47 1 1.9047 -0.5442 -2.0932 48 1 3.2416 -2.4536 1.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334471736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:06 Heat of formation + Delta-G solvation = -93.386699 kcal Electronic energy + Delta-G solvation = -29534.949022 eV Core-core repulsion = 25397.134258 eV Total energy + Delta-G solvation = -4137.814764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.94749 -39.92228 -39.09387 -37.57287 -37.01797 -35.59391 -33.73737 -33.35664 -31.83206 -31.22534 -30.51877 -27.94732 -25.87853 -25.09292 -24.59465 -23.35105 -22.08489 -21.74396 -20.89549 -19.91121 -18.67160 -18.50596 -17.21312 -17.09573 -16.85773 -16.63960 -16.30956 -16.18620 -15.91936 -15.48698 -14.93792 -14.78831 -14.63445 -14.16722 -13.93627 -13.74941 -13.48742 -13.09559 -13.04684 -12.86022 -12.58611 -12.53261 -12.36503 -12.23036 -11.97818 -11.77006 -11.38348 -11.28259 -11.20885 -11.00020 -10.85007 -10.73639 -10.57317 -10.37911 -10.20666 -9.97085 -9.89319 -9.64590 -9.35554 -9.06268 -8.61247 -8.15245 -6.13931 -4.14253 1.10978 1.97308 2.56214 2.64253 2.86260 3.19641 3.29295 3.31591 3.34068 3.46544 3.97350 4.14253 4.33940 4.49514 4.68433 4.78863 4.84041 4.99926 5.06338 5.14546 5.16309 5.16872 5.23394 5.27625 5.34034 5.40454 5.48923 5.53043 5.57316 5.81252 5.82625 5.91538 5.97607 6.00153 6.13767 6.30463 6.31978 6.46337 6.46486 6.61687 6.67283 6.79410 6.90553 7.07415 7.40351 7.67549 7.70002 7.78137 8.40988 8.46447 8.89297 9.47417 10.99062 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024135 B = 0.002180 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.878354 B =12843.758777 C =13142.430303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 C -0.115 4.115 4 C -0.104 4.104 5 C -0.140 4.140 6 C 0.508 3.492 7 O -0.549 6.549 8 N -0.608 5.608 9 C 0.111 3.889 10 C -0.139 4.139 11 C -0.123 4.123 12 C 0.006 3.994 13 H 0.030 0.970 14 C -0.515 4.515 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.266 1.266 22 C 0.127 3.873 23 N -0.714 5.714 24 C 0.704 3.296 25 O -0.545 6.545 26 N -0.681 5.681 27 C 0.533 3.467 28 O -0.463 6.463 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.264 0.736 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.443 0.557 48 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 -19.437 15.085 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 C -0.154 4.154 4 C -0.142 4.142 5 C -0.180 4.180 6 C 0.296 3.704 7 O -0.427 6.427 8 N -0.341 5.341 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.161 4.161 12 C -0.013 4.013 13 H 0.048 0.952 14 C -0.554 4.554 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.225 1.225 21 H -0.191 1.191 22 C 0.006 3.994 23 N -0.380 5.380 24 C 0.403 3.597 25 O -0.419 6.419 26 N -0.352 5.352 27 C 0.318 3.682 28 O -0.331 6.331 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.289 0.711 48 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 7.537 -19.796 14.842 25.865 hybrid contribution 0.100 0.494 0.810 0.954 sum 7.637 -19.302 15.652 25.998 Atomic orbital electron populations 1.22108 0.89780 1.03890 1.05332 1.21514 0.97629 0.93967 0.83785 1.21864 1.01460 0.90823 1.01221 1.21379 1.02024 0.93639 0.97143 1.21673 1.02137 0.96174 0.98045 1.20512 0.81177 0.81851 0.86862 1.90677 1.36973 1.67242 1.47822 1.48360 1.47505 1.11018 1.27182 1.21699 0.92800 0.94177 0.92586 1.22005 1.00339 0.96150 0.99276 1.21999 1.00682 0.98184 0.95213 1.19542 0.93646 0.91982 0.96164 0.95199 1.20908 1.38693 1.02903 0.92862 0.90608 1.24992 0.94828 0.96557 0.96686 1.69889 1.40727 1.13033 1.29924 0.86822 0.76796 0.78852 0.85604 1.20603 1.22506 1.19128 1.21870 0.98370 0.93417 0.85751 1.45749 1.54445 1.28253 1.09538 1.15865 0.79773 0.82420 0.81619 1.91073 1.48613 1.41381 1.60797 1.44361 1.51095 1.30946 1.08814 1.20805 0.77029 0.80440 0.89905 1.90846 1.56729 1.68864 1.16685 0.89546 0.89159 0.91403 0.88904 0.90514 0.90873 0.89991 0.88829 0.89122 0.90576 0.91456 0.92102 0.91722 0.93194 0.91929 0.92564 0.91993 0.89593 0.71127 0.72618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.61 37.16 0.32 -0.49 16 2 C 0.12 0.73 1.01 -132.09 -0.13 0.59 16 3 C -0.12 -0.66 4.58 -26.73 -0.12 -0.78 16 4 C -0.10 -0.79 4.00 -26.73 -0.11 -0.90 16 5 C -0.14 -1.26 4.05 -27.88 -0.11 -1.38 16 6 C 0.51 7.45 7.70 -10.99 -0.08 7.36 16 7 O -0.55 -10.02 15.39 5.56 0.09 -9.94 16 8 N -0.61 -9.53 2.97 -172.48 -0.51 -10.04 16 9 C 0.11 1.37 6.34 -3.71 -0.02 1.34 16 10 C -0.14 -2.04 6.08 -26.61 -0.16 -2.20 16 11 C -0.12 -2.40 4.65 -26.69 -0.12 -2.53 16 12 C 0.01 0.14 1.86 -91.40 -0.17 -0.03 16 13 H 0.03 0.71 7.21 -51.93 -0.37 0.34 16 14 C -0.52 -13.94 9.15 -34.44 -0.32 -14.25 16 15 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 16 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 17 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 18 Si 0.89 21.28 24.39 -169.99 -4.15 17.13 16 19 H -0.28 -6.43 6.86 56.52 0.39 -6.04 16 20 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.27 -6.11 6.53 56.52 0.37 -5.74 16 22 C 0.13 2.48 5.69 -3.46 -0.02 2.46 16 23 N -0.71 -4.55 5.62 -52.93 -0.30 -4.84 16 24 C 0.70 5.92 8.99 -88.02 -0.79 5.13 16 25 O -0.55 -6.64 18.04 5.33 0.10 -6.54 16 26 N -0.68 -4.46 5.70 -15.79 -0.09 -4.55 16 27 C 0.53 3.89 7.48 -10.55 -0.08 3.81 16 28 O -0.46 -4.53 18.02 5.60 0.10 -4.43 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.47 6.37 -51.93 -0.33 0.14 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.59 7.37 -51.93 -0.38 0.21 16 35 H 0.08 0.68 6.38 -51.93 -0.33 0.35 16 36 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 37 H 0.09 0.65 7.94 -51.93 -0.41 0.24 16 38 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 1.06 3.25 -51.93 -0.17 0.89 16 43 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 47 H 0.44 2.44 8.41 -40.82 -0.34 2.10 16 48 H 0.43 2.03 8.96 -40.82 -0.37 1.66 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -34.91 376.31 -7.52 -42.44 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.19 Total: 1.16 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.02 Total: 0.05 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.13 Total: -45.54 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.28 Total: -20.91 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.15 Total: 17.13 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.91 -7.52 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334471736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.949 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds