Wall clock time and date at job start Tue Mar 31 2020 20:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 110.53206 * 2 1 4 4 C 1.52999 * 109.47062 * 302.82955 * 3 2 1 5 5 C 1.52997 * 109.47177 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47503 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99640 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00312 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.63138 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77460 * 233.58621 * 9 8 6 11 11 C 1.53038 * 109.31614 * 305.36602 * 10 9 8 12 12 C 1.53045 * 109.53969 * 61.36259 * 11 10 9 13 13 H 1.08997 * 109.49270 * 58.59043 * 12 11 10 14 14 C 1.50697 * 109.49626 * 178.65308 * 12 11 10 15 15 H 1.08001 * 119.99652 * 120.00630 * 14 12 11 16 16 C 1.37875 * 120.00373 * 300.00065 * 14 12 11 17 17 N 1.31514 * 120.00203 * 180.02562 * 16 14 12 18 18 Si 1.86807 * 119.99786 * 0.02562 * 16 14 12 19 19 H 1.48492 * 109.46993 * 89.99967 * 18 16 14 20 20 H 1.48498 * 109.46797 * 210.00053 * 18 16 14 21 21 H 1.48505 * 109.46781 * 329.99670 * 18 16 14 22 22 C 1.46925 * 120.63109 * 179.72131 * 8 6 5 23 23 N 1.47308 * 110.60223 * 237.00588 * 2 1 3 24 24 C 1.34526 * 106.61861 * 241.47074 * 23 2 1 25 25 O 1.21538 * 123.77268 * 179.97438 * 24 23 2 26 26 N 1.33796 * 112.45867 * 359.74688 * 24 23 2 27 27 C 1.34772 * 111.64406 * 0.43741 * 26 24 23 28 28 O 1.21233 * 127.16267 * 179.85831 * 27 26 24 29 29 H 1.08999 * 109.46970 * 297.87160 * 1 2 3 30 30 H 1.08997 * 109.47266 * 57.87454 * 1 2 3 31 31 H 1.09005 * 109.46546 * 177.87435 * 1 2 3 32 32 H 1.09001 * 109.47386 * 62.82758 * 3 2 1 33 33 H 1.08997 * 109.47368 * 182.83036 * 3 2 1 34 34 H 1.08998 * 109.47356 * 300.00131 * 4 3 2 35 35 H 1.09003 * 109.47295 * 60.00130 * 4 3 2 36 36 H 1.08998 * 109.47238 * 300.00390 * 5 4 3 37 37 H 1.09003 * 109.46748 * 59.99983 * 5 4 3 38 38 H 1.09000 * 109.58475 * 353.37572 * 9 8 6 39 39 H 1.08997 * 109.58472 * 113.79918 * 9 8 6 40 40 H 1.08998 * 109.49738 * 65.31529 * 10 9 8 41 41 H 1.08998 * 109.49478 * 185.37781 * 10 9 8 42 42 H 1.08998 * 109.46453 * 181.38814 * 11 10 9 43 43 H 1.09010 * 109.45620 * 301.34658 * 11 10 9 44 44 H 0.96992 * 119.99924 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.59063 * 246.20045 * 22 8 6 46 46 H 1.09003 * 109.58586 * 6.62595 * 22 8 6 47 47 H 0.96997 * 126.68895 * 61.48500 * 23 2 1 48 48 H 0.96993 * 124.18333 * 180.30845 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4329 0.0000 4 6 1.5132 2.1847 -1.2121 5 6 2.0493 3.6177 -1.2118 6 6 1.5047 4.3582 -2.4060 7 8 0.7605 3.7952 -3.1808 8 7 1.8444 5.6458 -2.6130 9 6 2.7453 6.3411 -1.6835 10 6 2.0688 7.6332 -1.2151 11 6 1.6622 8.4628 -2.4351 12 6 0.6609 7.6726 -3.2808 13 1 -0.2122 7.4274 -2.6762 14 6 0.2360 8.5034 -4.4641 15 1 0.4159 8.1460 -5.4673 16 6 -0.3825 9.7196 -4.2662 17 7 -0.7538 10.4443 -5.2989 18 14 -0.6933 10.3380 -2.5311 19 1 0.4721 11.1368 -2.0742 20 1 -1.9111 11.1876 -2.5191 21 1 -0.8879 9.1810 -1.6207 22 6 1.3264 6.3791 -3.7760 23 7 2.0484 -0.7509 -1.1565 24 6 2.7601 -1.7789 -0.6601 25 8 3.3286 -2.6024 -1.3498 26 7 2.7761 -1.7907 0.6777 27 6 2.0634 -0.7692 1.1924 28 8 1.8894 -0.5152 2.3650 29 1 -0.3633 0.4804 0.9085 30 1 -0.3634 0.5465 -0.8703 31 1 -0.3632 -1.0270 -0.0381 32 1 1.7546 1.9378 0.9142 33 1 3.1553 1.4132 -0.0507 34 1 1.8252 1.6799 -2.1264 35 1 0.4245 2.2045 -1.1614 36 1 1.7369 4.1223 -0.2975 37 1 3.1380 3.5983 -1.2623 38 1 2.9475 5.7020 -0.8240 39 1 3.6796 6.5810 -2.1910 40 1 1.1824 7.3883 -0.6299 41 1 2.7637 8.2055 -0.6005 42 1 1.2027 9.3942 -2.1042 43 1 2.5458 8.6864 -3.0330 44 1 -1.1886 11.3001 -5.1597 45 1 2.1476 6.6221 -4.4503 46 1 0.5921 5.7651 -4.2976 47 1 1.9047 -0.5442 -2.0932 48 1 3.2416 -2.4536 1.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334471736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:05 Heat of formation + Delta-G solvation = -121.336763 kcal Electronic energy + Delta-G solvation = -29536.161028 eV Core-core repulsion = 25397.134258 eV Total energy + Delta-G solvation = -4139.026769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.54085 -41.11046 -39.77924 -38.64346 -37.93549 -36.26393 -35.33305 -34.18860 -33.45045 -32.26065 -31.58502 -28.69042 -27.03731 -26.47811 -25.60769 -23.98828 -23.18219 -22.81808 -21.48718 -21.29060 -19.76077 -19.25332 -18.80934 -18.08349 -17.67716 -17.54975 -17.00121 -16.90909 -16.75558 -16.57352 -16.44576 -15.72509 -15.38899 -15.33102 -15.04571 -14.92386 -14.87235 -14.29351 -14.07872 -13.91189 -13.76971 -13.56190 -13.10688 -12.96689 -12.96325 -12.88402 -12.60826 -12.40471 -12.22417 -12.05875 -11.97078 -11.85542 -11.57384 -11.50843 -11.48646 -11.24064 -11.19982 -11.05869 -10.68261 -10.62330 -10.49814 -9.47468 -8.31653 -6.36843 0.50513 1.28321 1.35799 1.41737 1.46186 1.76346 1.92742 2.08666 2.19375 2.31159 2.88941 3.03407 3.45885 3.61720 3.69761 4.02766 4.09063 4.15665 4.21766 4.24903 4.28297 4.35265 4.49937 4.57750 4.63125 4.65661 4.70696 4.77535 4.80204 4.83398 4.91144 4.95620 5.00163 5.04662 5.12449 5.15263 5.17726 5.28784 5.41019 5.41978 5.48857 5.67265 5.76391 5.77600 5.87132 6.26162 6.35666 6.63151 6.70138 7.09446 7.27886 7.32087 8.85121 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.024135 B = 0.002180 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.878354 B =12843.758777 C =13142.430303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.125 3.875 3 C -0.106 4.106 4 C -0.101 4.101 5 C -0.130 4.130 6 C 0.500 3.500 7 O -0.595 6.595 8 N -0.613 5.613 9 C 0.107 3.893 10 C -0.134 4.134 11 C -0.124 4.124 12 C 0.009 3.991 13 H 0.015 0.985 14 C -0.523 4.523 15 H 0.031 0.969 16 C 0.010 3.990 17 N -0.950 5.950 18 Si 0.957 3.043 19 H -0.259 1.259 20 H -0.303 1.303 21 H -0.249 1.249 22 C 0.138 3.862 23 N -0.704 5.704 24 C 0.706 3.294 25 O -0.586 6.586 26 N -0.672 5.672 27 C 0.540 3.460 28 O -0.485 6.485 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.035 0.965 43 H 0.060 0.940 44 H 0.266 0.734 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.447 0.553 48 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.594 -19.952 19.117 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.169 4.169 6 C 0.290 3.710 7 O -0.476 6.476 8 N -0.345 5.345 9 C -0.014 4.014 10 C -0.172 4.172 11 C -0.162 4.162 12 C -0.010 4.010 13 H 0.033 0.967 14 C -0.562 4.562 15 H 0.049 0.951 16 C -0.187 4.187 17 N -0.590 5.590 18 Si 0.784 3.216 19 H -0.184 1.184 20 H -0.231 1.231 21 H -0.173 1.173 22 C 0.015 3.985 23 N -0.369 5.369 24 C 0.405 3.595 25 O -0.462 6.462 26 N -0.343 5.343 27 C 0.326 3.674 28 O -0.355 6.355 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.294 0.706 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 9.303 -20.319 18.912 29.276 hybrid contribution -0.475 0.602 -0.587 0.965 sum 8.828 -19.717 18.325 28.329 Atomic orbital electron populations 1.22116 0.89130 1.04074 1.05680 1.21573 0.98025 0.94101 0.82850 1.21798 1.01953 0.89896 1.00742 1.21326 1.01588 0.93276 0.97708 1.21752 1.03653 0.95835 0.95706 1.21638 0.80167 0.81321 0.87845 1.90662 1.39026 1.68116 1.49821 1.48430 1.48047 1.11570 1.26482 1.22030 0.91994 0.93804 0.93568 1.21993 1.01490 0.96716 0.96998 1.21881 0.99356 0.97855 0.97063 1.19419 0.94309 0.92869 0.94438 0.96699 1.21267 1.38354 1.03538 0.92992 0.95083 1.25920 0.94633 0.96804 1.01321 1.70056 1.42459 1.13780 1.32688 0.85721 0.76907 0.78736 0.80259 1.18433 1.23149 1.17281 1.21338 0.97403 0.92282 0.87476 1.45757 1.53536 1.27570 1.10016 1.15923 0.79475 0.82231 0.81838 1.91051 1.50464 1.42988 1.61740 1.44258 1.50750 1.31015 1.08245 1.20875 0.76521 0.80299 0.89737 1.90846 1.57578 1.69459 1.17635 0.88917 0.89091 0.91377 0.87523 0.89448 0.91732 0.90906 0.86096 0.86091 0.85568 0.90122 0.92118 0.88035 0.94684 0.92089 0.92519 0.92509 0.92774 0.70622 0.71703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.61 71.98 0.62 -0.67 16 2 C 0.12 1.17 1.01 2.99 0.00 1.18 16 3 C -0.11 -0.79 4.58 30.60 0.14 -0.65 16 4 C -0.10 -1.21 4.00 30.59 0.12 -1.09 16 5 C -0.13 -1.73 4.05 29.85 0.12 -1.61 16 6 C 0.50 13.52 7.70 87.66 0.67 14.20 16 7 O -0.59 -21.69 15.39 -3.04 -0.05 -21.74 16 8 N -0.61 -17.83 2.97 -817.99 -2.43 -20.25 16 9 C 0.11 2.11 6.34 86.36 0.55 2.66 16 10 C -0.13 -3.27 6.08 30.67 0.19 -3.09 16 11 C -0.12 -4.57 4.65 30.62 0.14 -4.43 16 12 C 0.01 0.42 1.86 -11.30 -0.02 0.39 16 13 H 0.01 0.71 7.21 -2.39 -0.02 0.69 16 14 C -0.52 -29.67 9.15 25.60 0.23 -29.43 16 15 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 16 C 0.01 0.59 5.45 84.65 0.46 1.05 16 17 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 18 Si 0.96 44.12 24.39 68.60 1.67 45.80 16 19 H -0.26 -11.01 6.86 99.48 0.68 -10.33 16 20 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 21 H -0.25 -10.64 6.53 99.48 0.65 -9.99 16 22 C 0.14 5.51 5.69 86.52 0.49 6.01 16 23 N -0.70 -7.72 5.62 -439.80 -2.47 -10.19 16 24 C 0.71 10.94 8.99 179.44 1.61 12.56 16 25 O -0.59 -13.96 18.04 -3.84 -0.07 -14.03 16 26 N -0.67 -7.65 5.70 -441.11 -2.52 -10.17 16 27 C 0.54 6.60 7.48 87.94 0.66 7.26 16 28 O -0.49 -8.35 18.02 -2.88 -0.05 -8.40 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.79 6.37 -2.39 -0.02 0.78 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.90 7.37 -2.39 -0.02 0.88 16 35 H 0.07 1.04 6.38 -2.39 -0.02 1.02 16 36 H 0.12 1.06 7.69 -2.39 -0.02 1.04 16 37 H 0.12 0.97 7.94 -2.39 -0.02 0.96 16 38 H 0.13 1.30 5.93 -2.39 -0.01 1.29 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.03 1.39 3.25 -2.39 -0.01 1.38 16 43 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.05 2.46 7.00 -2.39 -0.02 2.45 16 47 H 0.45 4.31 8.41 -92.71 -0.78 3.53 16 48 H 0.44 3.51 8.96 -92.71 -0.83 2.68 16 Total: -1.00 -82.23 376.31 -0.30 -82.53 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -0.68 Total: 11.17 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 6.00 Total: 4.34 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -7.12 Total: -99.66 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.17 Total: -44.17 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.80 kcal Total: -82.23 -0.30 -82.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334471736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.811 kcal (2) G-P(sol) polarization free energy of solvation -82.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds