Wall clock time and date at job start Tue Mar 31 2020 20:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.42026 * 128.01634 * 2 1 4 4 N 1.39486 * 126.89771 * 359.97438 * 3 2 1 5 5 C 1.34781 * 120.00087 * 179.71308 * 4 3 2 6 6 O 1.21582 * 119.99816 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00100 * 179.97438 * 5 4 3 8 8 C 1.47024 * 125.64649 * 0.02562 * 7 5 4 9 9 C 1.54325 * 107.27034 * 178.90161 * 8 7 5 10 10 C 1.55151 * 102.94148 * 337.81006 * 9 8 7 11 11 O 1.42901 * 111.00731 * 277.38992 * 10 9 8 12 12 C 1.50699 * 111.00632 * 153.57624 * 10 9 8 13 13 H 1.08001 * 119.99640 * 3.17508 * 12 10 9 14 14 C 1.37879 * 120.00468 * 182.90618 * 12 10 9 15 15 N 1.31511 * 119.99845 * 0.27171 * 14 12 10 16 16 Si 1.86797 * 120.00014 * 180.27319 * 14 12 10 17 17 H 1.48499 * 109.47168 * 59.99898 * 16 14 12 18 18 H 1.48507 * 109.46810 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47207 * 299.99730 * 16 14 12 20 20 C 1.47463 * 125.63122 * 179.97438 * 7 5 4 21 21 N 1.30730 * 106.20738 * 179.73537 * 3 2 1 22 22 O 1.20911 * 111.47260 * 0.26381 * 21 3 2 23 23 C 1.34083 * 111.74841 * 359.97438 * 22 21 3 24 24 C 1.50703 * 126.69343 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47223 * 233.84505 * 24 23 22 26 26 C 1.52996 * 109.47154 * 353.85021 * 24 23 22 27 27 C 1.52999 * 109.47053 * 113.84975 * 24 23 22 28 28 H 1.08999 * 109.47140 * 95.16211 * 1 2 3 29 29 H 1.09004 * 109.46815 * 215.15666 * 1 2 3 30 30 H 1.08996 * 109.47452 * 335.15687 * 1 2 3 31 31 H 0.96998 * 120.00168 * 359.71186 * 4 3 2 32 32 H 1.09001 * 109.87996 * 59.48851 * 8 7 5 33 33 H 1.09002 * 109.88500 * 298.32499 * 8 7 5 34 34 H 1.08997 * 110.71809 * 219.44543 * 9 8 7 35 35 H 1.09000 * 110.71821 * 96.17074 * 9 8 7 36 36 H 0.96699 * 114.00536 * 176.82548 * 11 10 9 37 37 H 0.97001 * 120.00215 * 179.97438 * 15 14 12 38 38 H 1.08993 * 110.34926 * 85.32214 * 20 7 5 39 39 H 1.09004 * 110.40327 * 322.98776 * 20 7 5 40 40 H 1.09003 * 109.47016 * 60.00277 * 25 24 23 41 41 H 1.08997 * 109.47148 * 179.97438 * 25 24 23 42 42 H 1.08995 * 109.47473 * 300.00585 * 25 24 23 43 43 H 1.08999 * 109.47425 * 59.99877 * 26 24 23 44 44 H 1.09002 * 109.46980 * 179.97438 * 26 24 23 45 45 H 1.09003 * 109.46964 * 299.99648 * 26 24 23 46 46 H 1.08999 * 109.47153 * 65.26118 * 27 24 23 47 47 H 1.08999 * 109.47353 * 185.26484 * 27 24 23 48 48 H 1.09009 * 109.47034 * 305.26694 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3817 1.1189 0.0000 4 7 2.0187 2.4657 -0.0005 5 6 2.9703 3.4202 0.0054 6 8 4.1451 3.1073 0.0117 7 7 2.6195 4.7215 0.0044 8 6 1.2430 5.2379 -0.0023 9 6 1.3313 6.7783 0.0274 10 6 2.7422 7.0341 0.6200 11 8 2.7205 6.9553 2.0467 12 6 3.2870 8.3629 0.1635 13 1 2.6807 9.0133 -0.4495 14 6 4.5574 8.7509 0.5332 15 7 5.2957 7.9590 1.2797 16 14 5.2298 10.4015 -0.0263 17 1 4.3590 11.4900 0.4856 18 1 6.6064 10.5797 0.5015 19 1 5.2584 10.4470 -1.5103 20 6 3.5532 5.8629 0.0109 21 7 3.5955 0.6333 0.0058 22 8 3.5884 -0.5758 0.0040 23 6 2.3401 -1.0653 -0.0028 24 6 1.9430 -2.5191 -0.0074 25 6 0.9931 -2.7846 -1.1771 26 6 3.1927 -3.3887 -0.1576 27 6 1.2397 -2.8598 1.3080 28 1 -0.3633 -0.0925 -1.0235 29 1 -0.3633 -0.8402 0.5918 30 1 -0.3634 0.9325 0.4317 31 1 1.0814 2.7154 -0.0051 32 1 0.7087 4.8802 0.8779 33 1 0.7296 4.9132 -0.9074 34 1 0.5598 7.1964 0.6739 35 1 1.2559 7.1883 -0.9798 36 1 3.5886 7.0602 2.4596 37 1 6.1896 8.2318 1.5394 38 1 3.8637 6.1044 -1.0056 39 1 4.4216 5.6400 0.6309 40 1 1.4941 -2.5419 -2.1142 41 1 0.7062 -3.8362 -1.1806 42 1 0.1028 -2.1651 -1.0701 43 1 3.8694 -3.1996 0.6758 44 1 2.9055 -4.4402 -0.1604 45 1 3.6937 -3.1460 -1.0947 46 1 0.3013 -2.3088 1.3716 47 1 1.0359 -3.9299 1.3446 48 1 1.8808 -2.5831 2.1451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467185294.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:05 Heat of formation + Delta-G solvation = -40.633377 kcal Electronic energy + Delta-G solvation = -30159.672535 eV Core-core repulsion = 26024.145327 eV Total energy + Delta-G solvation = -4135.527208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.95808 -41.53895 -39.34265 -38.43373 -36.89439 -36.17075 -34.22039 -33.99247 -32.29133 -31.49104 -29.65073 -29.21700 -28.12674 -27.90108 -27.18930 -24.95380 -23.52441 -23.04757 -21.70356 -21.49790 -20.09662 -19.50848 -19.02893 -18.72146 -17.98867 -17.26228 -16.99239 -16.96470 -16.30226 -16.07603 -15.68246 -15.28669 -15.05607 -14.95685 -14.82801 -14.67824 -14.27618 -13.92035 -13.88372 -13.55847 -13.49797 -13.43764 -13.07396 -13.04118 -12.83652 -12.75119 -12.58152 -12.43898 -12.39489 -12.35032 -12.28526 -12.13414 -12.06243 -11.95989 -11.58051 -11.35878 -11.24994 -10.68141 -10.39054 -10.09793 -9.99347 -9.43496 -8.27537 -6.45111 0.54146 1.06968 1.16263 1.42732 1.43154 1.51403 2.10599 2.23830 2.36012 2.66630 2.98649 3.23229 3.66575 3.72545 3.76535 3.91806 4.00856 4.05503 4.13663 4.20619 4.27438 4.33771 4.55644 4.65211 4.69340 4.73578 4.79739 4.84343 4.86069 4.97373 4.99410 5.01356 5.04154 5.07700 5.11064 5.16301 5.18144 5.31112 5.32234 5.37384 5.42304 5.45784 5.53630 5.73066 5.80556 6.02981 6.61106 6.73312 7.22857 7.26028 7.32661 7.54606 8.77704 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027795 B = 0.002436 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.125655 B =11492.629266 C =12020.201472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.205 4.205 3 C 0.240 3.760 4 N -0.627 5.627 5 C 0.703 3.297 6 O -0.608 6.608 7 N -0.623 5.623 8 C 0.100 3.900 9 C -0.108 4.108 10 C 0.233 3.767 11 O -0.588 6.588 12 C -0.555 4.555 13 H 0.074 0.926 14 C 0.023 3.977 15 N -0.919 5.919 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.288 1.288 19 H -0.269 1.269 20 C 0.125 3.875 21 N -0.405 5.405 22 O 0.088 5.912 23 C -0.014 4.014 24 C 0.018 3.982 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.142 4.142 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.433 0.567 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.375 0.625 37 H 0.269 0.731 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.695 -22.121 -3.777 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.211 4.211 3 C -0.010 4.010 4 N -0.285 5.285 5 C 0.405 3.595 6 O -0.485 6.485 7 N -0.360 5.360 8 C -0.022 4.022 9 C -0.146 4.146 10 C 0.192 3.808 11 O -0.396 6.396 12 C -0.593 4.593 13 H 0.092 0.908 14 C -0.178 4.178 15 N -0.558 5.558 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.214 1.214 19 H -0.194 1.194 20 C 0.002 3.998 21 N -0.120 5.120 22 O 0.027 5.973 23 C -0.078 4.078 24 C 0.017 3.983 25 C -0.199 4.199 26 C -0.206 4.206 27 C -0.199 4.199 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.274 0.726 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.224 0.776 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.078 -21.923 -3.790 26.876 hybrid contribution 0.989 1.476 0.041 1.777 sum -14.089 -20.447 -3.749 25.112 Atomic orbital electron populations 1.20423 0.83983 1.04610 1.04276 1.20947 0.99736 0.87601 1.12850 1.20584 0.90439 0.86374 1.03605 1.41434 1.10111 1.00207 1.76727 1.15730 0.84504 0.80607 0.78678 1.90972 1.18314 1.81103 1.58144 1.47867 1.10368 1.02579 1.75179 1.22300 0.81591 0.95575 1.02720 1.22602 0.96696 0.93368 1.01904 1.19876 0.91892 0.90375 0.78613 1.86065 1.36174 1.95703 1.21680 1.21794 1.00396 1.03522 1.33577 0.90791 1.25890 0.96915 1.00792 0.94183 1.69779 1.10925 1.38198 1.36907 0.85477 0.77108 0.79516 0.78762 1.19127 1.21397 1.19428 1.22838 0.92915 0.84800 0.99256 1.74527 1.20917 0.91327 1.25192 1.84870 1.29714 1.14236 1.68487 1.24921 0.82928 0.98911 1.01029 1.19385 0.97373 0.82218 0.99311 1.22013 0.98556 1.04153 0.95221 1.21930 0.95967 1.00697 1.01989 1.21986 1.00489 1.03810 0.93597 0.88964 0.88222 0.90583 0.72624 0.90294 0.88423 0.89107 0.88864 0.77600 0.92152 0.93730 0.94259 0.93123 0.88771 0.90488 0.93042 0.88829 0.92943 0.90657 0.88675 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 8.72 71.24 0.62 -0.28 16 2 C -0.21 -4.66 6.14 -19.62 -0.12 -4.78 16 3 C 0.24 8.16 7.90 134.11 1.06 9.21 16 4 N -0.63 -20.98 5.38 -323.26 -1.74 -22.72 16 5 C 0.70 31.37 8.45 179.05 1.51 32.88 16 6 O -0.61 -33.80 15.37 -3.97 -0.06 -33.87 16 7 N -0.62 -26.42 3.33 -829.61 -2.76 -29.18 16 8 C 0.10 3.12 6.15 86.73 0.53 3.65 16 9 C -0.11 -3.92 6.13 31.78 0.19 -3.73 16 10 C 0.23 11.29 0.88 -10.14 -0.01 11.28 16 11 O -0.59 -30.60 13.17 -148.98 -1.96 -32.57 16 12 C -0.55 -28.77 8.25 25.60 0.21 -28.56 16 13 H 0.07 3.64 7.78 -2.91 -0.02 3.62 16 14 C 0.02 1.21 5.29 84.66 0.45 1.66 16 15 N -0.92 -51.47 10.69 21.45 0.23 -51.24 16 16 Si 0.97 42.20 29.54 68.60 2.03 44.23 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 C 0.13 6.36 5.52 86.86 0.48 6.84 16 21 N -0.41 -16.50 10.38 -56.31 -0.58 -17.09 16 22 O 0.09 2.88 10.67 71.24 0.76 3.64 16 23 C -0.01 -0.32 5.76 25.00 0.14 -0.17 16 24 C 0.02 0.24 0.84 -52.93 -0.04 0.20 16 25 C -0.14 -1.23 8.28 71.98 0.60 -0.63 16 26 C -0.15 -1.96 8.08 71.98 0.58 -1.38 16 27 C -0.14 -1.35 8.36 71.98 0.60 -0.75 16 28 H 0.09 0.79 7.72 -2.39 -0.02 0.78 16 29 H 0.10 0.74 5.55 -2.38 -0.01 0.73 16 30 H 0.08 0.81 7.90 -2.39 -0.02 0.79 16 31 H 0.43 10.33 7.57 -92.71 -0.70 9.63 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.09 3.11 8.03 -2.39 -0.02 3.09 16 36 H 0.37 20.82 7.24 -74.06 -0.54 20.28 16 37 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.04 2.34 8.03 -2.39 -0.02 2.33 16 39 H 0.04 2.33 7.48 -2.39 -0.02 2.31 16 40 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.08 0.51 5.70 -2.39 -0.01 0.50 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 0.56 5.87 -2.39 -0.01 0.54 16 47 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.05 0.60 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -78.98 383.20 2.48 -76.50 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -0.24 Total: 36.85 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 6.81 Total: 25.44 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -4.86 Total: -120.23 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -1.26 Total: -62.79 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -78.98 2.48 -76.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467185294.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.871 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds