Wall clock time and date at job start Tue Mar 31 2020 20:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34214 * 125.43768 * 2 1 4 4 C 1.33648 * 110.91297 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.80891 * 179.97438 * 4 3 2 6 6 C 1.36422 * 108.39435 * 359.97438 * 4 3 2 7 7 C 1.47374 * 127.19339 * 180.02562 * 6 4 3 8 8 O 1.21617 * 120.00188 * 269.97138 * 7 6 4 9 9 N 1.34778 * 120.00112 * 89.97322 * 7 6 4 10 10 C 1.46503 * 119.99808 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47208 * 65.00204 * 11 10 9 13 13 C 1.53000 * 109.47470 * 185.00144 * 11 10 9 14 14 N 1.46901 * 109.47139 * 305.00512 * 11 10 9 15 15 C 1.46897 * 111.00316 * 154.99795 * 14 11 10 16 16 C 1.50706 * 109.47441 * 179.97438 * 15 14 11 17 17 O 1.21291 * 119.99462 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99960 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99690 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00052 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99989 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99691 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99841 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46992 * 60.00741 * 23 21 19 25 25 H 1.48507 * 109.46746 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47596 * 300.00336 * 23 21 19 27 27 C 1.34177 * 125.43737 * 179.97438 * 2 1 3 28 28 C 1.50699 * 127.02250 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.47299 * 359.97181 * 1 2 3 30 30 H 1.08997 * 109.47240 * 119.97511 * 1 2 3 31 31 H 1.09006 * 109.47178 * 239.97970 * 1 2 3 32 32 H 1.09000 * 109.46590 * 0.02925 * 5 4 3 33 33 H 1.09003 * 109.46988 * 120.01936 * 5 4 3 34 34 H 1.08995 * 109.47196 * 240.02661 * 5 4 3 35 35 H 0.96996 * 119.99795 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47518 * 300.00409 * 10 9 7 37 37 H 1.08994 * 109.47013 * 60.00470 * 10 9 7 38 38 H 1.08997 * 109.47061 * 299.99926 * 13 11 10 39 39 H 1.09002 * 109.46934 * 60.00338 * 13 11 10 40 40 H 1.08994 * 109.47073 * 180.02562 * 13 11 10 41 41 H 1.00903 * 111.00080 * 31.04017 * 14 11 10 42 42 H 1.09005 * 109.47272 * 300.00045 * 15 14 11 43 43 H 1.09002 * 109.47504 * 59.99605 * 15 14 11 44 44 H 0.96997 * 120.00170 * 359.97438 * 18 16 15 45 45 H 0.97004 * 119.99949 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.46695 * 89.97440 * 28 27 2 47 47 H 1.09001 * 109.46894 * 209.97160 * 28 27 2 48 48 H 1.08994 * 109.46906 * 329.97576 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7583 -0.0006 5 6 4.7390 1.7203 -0.0013 6 6 3.6710 -0.6028 -0.0004 7 6 4.9025 -1.4124 -0.0003 8 8 5.4103 -1.7471 -1.0535 9 7 5.4659 -1.7820 1.1669 10 6 6.6897 -2.5873 1.1670 11 6 7.1161 -2.8672 2.6094 12 1 6.3633 -3.4867 3.0971 13 6 8.4590 -3.6003 2.6113 14 7 7.2504 -1.5973 3.3355 15 6 7.0690 -1.7948 4.7798 16 6 7.2142 -0.4734 5.4897 17 8 7.4464 0.5337 4.8549 18 7 7.0870 -0.4110 6.8300 19 6 7.2185 0.7912 7.4757 20 1 7.4236 1.6883 6.9104 21 6 7.0869 0.8557 8.8575 22 7 6.8368 -0.2357 9.5453 23 14 7.2668 2.4937 9.7374 24 1 6.2397 3.4411 9.2346 25 1 7.0841 2.2938 11.1976 26 1 8.6200 3.0481 9.4797 27 6 2.2850 -1.0932 0.0005 28 6 1.8308 -2.5301 0.0006 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8902 31 1 -0.3634 -0.5142 0.8898 32 1 4.3626 2.7432 -0.0008 33 1 5.3473 1.5566 0.8883 34 1 5.3460 1.5568 -0.8917 35 1 5.0607 -1.5154 2.0069 36 1 6.5039 -3.5309 0.6538 37 1 7.4822 -2.0439 0.6525 38 1 8.3592 -4.5426 2.0726 39 1 9.2117 -2.9809 2.1237 40 1 8.7624 -3.8001 3.6389 41 1 6.6045 -0.9079 2.9809 42 1 6.0758 -2.2021 4.9689 43 1 7.8231 -2.4899 5.1490 44 1 6.9017 -1.2164 7.3376 45 1 6.7453 -0.1908 10.5100 46 1 1.7213 -2.8766 -1.0271 47 1 2.5700 -3.1447 0.5144 48 1 0.8728 -2.6083 0.5144 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480499213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:11 Heat of formation + Delta-G solvation = -95.242160 kcal Electronic energy + Delta-G solvation = -29156.446987 eV Core-core repulsion = 25018.551764 eV Total energy + Delta-G solvation = -4137.895223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.64908 -40.81292 -40.12592 -38.21246 -35.98017 -35.31578 -34.98652 -34.05654 -33.27092 -32.03729 -30.64774 -29.26339 -28.16557 -27.50321 -25.80970 -25.34354 -23.89071 -21.71004 -21.30485 -21.08477 -20.32406 -19.90893 -18.49145 -17.86338 -17.61309 -17.13727 -16.98010 -16.84302 -16.53131 -16.34683 -15.90674 -15.52746 -15.37444 -14.96530 -14.65562 -14.44279 -14.36210 -14.26405 -13.91521 -13.78086 -13.70578 -13.57462 -13.52004 -13.47919 -13.34886 -13.28425 -13.06594 -12.94755 -12.82162 -12.59114 -12.42456 -12.25182 -12.12577 -11.91421 -11.49757 -11.33047 -10.49547 -10.34365 -10.28473 -10.01247 -9.39507 -9.30441 -8.46509 -5.94975 0.52841 1.12976 1.32608 1.39701 1.42059 1.52488 1.72999 2.05386 2.13303 2.28975 2.85818 3.21085 3.43368 3.47103 3.61011 3.71799 3.85802 4.04880 4.15251 4.24436 4.29512 4.34225 4.37579 4.44550 4.47981 4.58174 4.59316 4.62772 4.65676 4.76064 4.77893 4.81491 4.84253 4.93230 4.95853 5.01761 5.04288 5.16531 5.20551 5.41024 5.44172 5.50453 5.86979 6.05637 6.08005 6.25918 6.31949 6.60312 6.98536 7.12927 7.56687 8.11900 8.70587 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.002774 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.438874 B =10090.687162 C =11680.199444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.018 4.018 3 O -0.181 6.181 4 C 0.039 3.961 5 C -0.083 4.083 6 C -0.257 4.257 7 C 0.603 3.397 8 O -0.570 6.570 9 N -0.712 5.712 10 C 0.121 3.879 11 C 0.078 3.922 12 H 0.068 0.932 13 C -0.136 4.136 14 N -0.678 5.678 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.166 4.166 28 C -0.079 4.079 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.405 0.595 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.341 0.659 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.691 -7.196 -16.313 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 O -0.078 6.078 4 C -0.013 4.013 5 C -0.139 4.139 6 C -0.262 4.262 7 C 0.389 3.611 8 O -0.450 6.450 9 N -0.363 5.363 10 C -0.002 4.002 11 C -0.031 4.031 12 H 0.086 0.914 13 C -0.194 4.194 14 N -0.313 5.313 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.209 5.209 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.168 4.168 28 C -0.136 4.136 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.241 0.759 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.162 0.838 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.615 -6.577 -17.227 21.277 hybrid contribution -0.700 0.378 1.274 1.502 sum -11.315 -6.199 -15.953 20.518 Atomic orbital electron populations 1.20526 0.81758 1.05158 1.05205 1.22789 0.95418 0.82553 1.05845 1.83692 1.16038 1.36108 1.71976 1.22864 0.83855 0.93610 1.00984 1.20554 0.91082 0.97839 1.04454 1.21093 0.94399 0.93713 1.16957 1.17350 0.82289 0.78109 0.83347 1.90767 1.64704 1.56928 1.32555 1.46024 1.27767 1.54222 1.08325 1.21662 0.85549 0.95995 0.96974 1.21868 0.99124 0.90406 0.91691 0.91391 1.21743 0.95120 0.99875 1.02709 1.60141 1.59709 1.09831 1.01663 1.21624 1.02309 0.94073 0.88857 1.20862 0.82485 0.91654 0.82546 1.90496 1.55044 1.38743 1.66574 1.41912 1.62974 1.10198 1.05828 1.19621 1.47916 0.88166 0.90673 0.90340 1.26002 0.96288 1.02188 0.96631 1.69659 1.48695 1.29132 1.08565 0.85029 0.78894 0.77518 0.77164 1.19640 1.19519 1.19830 1.21364 0.89251 0.97953 1.08237 1.20225 1.02189 0.88354 1.02825 0.89714 0.87866 0.87893 0.88191 0.89112 0.88827 0.75880 0.89362 0.91460 0.89944 0.92620 0.92162 0.83826 0.91205 0.87571 0.76962 0.91295 0.90778 0.92264 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.93 71.24 0.71 -0.07 16 2 C -0.02 -0.37 7.28 24.76 0.18 -0.18 16 3 O -0.18 -4.46 10.52 4.51 0.05 -4.41 16 4 C 0.04 0.99 7.37 25.26 0.19 1.18 16 5 C -0.08 -1.78 10.17 71.24 0.72 -1.05 16 6 C -0.26 -6.90 6.07 -18.99 -0.12 -7.02 16 7 C 0.60 17.12 7.41 86.65 0.64 17.76 16 8 O -0.57 -19.88 17.11 -4.08 -0.07 -19.95 16 9 N -0.71 -16.92 4.98 -466.42 -2.33 -19.25 16 10 C 0.12 2.67 5.31 86.38 0.46 3.13 16 11 C 0.08 1.66 2.81 44.91 0.13 1.79 16 12 H 0.07 1.24 7.80 -2.38 -0.02 1.22 16 13 C -0.14 -2.61 9.42 71.98 0.68 -1.93 16 14 N -0.68 -19.91 5.92 -495.56 -2.94 -22.85 16 15 C 0.06 2.03 5.96 85.56 0.51 2.54 16 16 C 0.44 20.08 7.82 87.66 0.69 20.76 16 17 O -0.62 -33.55 15.78 -3.06 -0.05 -33.60 16 18 N -0.57 -28.58 5.29 -306.98 -1.62 -30.21 16 19 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -48.86 13.05 21.66 0.28 -48.58 16 23 Si 0.99 42.37 29.55 68.60 2.03 44.40 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 C -0.17 -3.75 6.38 -18.49 -0.12 -3.87 16 28 C -0.08 -1.32 10.15 71.24 0.72 -0.60 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.41 9.08 7.36 -92.71 -0.68 8.40 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.19 7.45 -2.39 -0.02 1.18 16 41 H 0.34 10.64 6.41 -89.69 -0.58 10.06 16 42 H 0.07 1.89 8.06 -2.38 -0.02 1.88 16 43 H 0.11 3.07 7.44 -2.39 -0.02 3.05 16 44 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 45 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.09 1.06 7.90 -2.39 -0.02 1.04 16 Total: -1.00 -74.37 408.28 1.04 -73.33 By element: Atomic # 1 Polarization: 47.65 SS G_CDS: -0.99 Total: 46.66 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.67 Total: 14.45 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -6.60 Total: -120.88 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -0.07 Total: -57.96 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -74.37 1.04 -73.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480499213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.912 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds