Wall clock time and date at job start Tue Mar 31 2020 20:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34221 * 125.43367 * 2 1 4 4 C 1.33652 * 110.90330 * 179.80037 * 3 2 1 5 5 C 1.50707 * 125.79726 * 180.24714 * 4 3 2 6 6 C 1.36413 * 108.40121 * 0.39185 * 4 3 2 7 7 C 1.47380 * 127.19411 * 179.89170 * 6 4 3 8 8 O 1.21613 * 120.00125 * 269.68588 * 7 6 4 9 9 N 1.34777 * 119.99852 * 89.41194 * 7 6 4 10 10 C 1.46499 * 120.00195 * 180.27819 * 9 7 6 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47106 * 294.99556 * 11 10 9 13 13 C 1.52999 * 109.47251 * 174.99822 * 11 10 9 14 14 N 1.46896 * 109.47747 * 54.99572 * 11 10 9 15 15 C 1.46901 * 111.00608 * 205.00193 * 14 11 10 16 16 C 1.50696 * 109.47032 * 179.97438 * 15 14 11 17 17 O 1.21295 * 120.00285 * 0.02562 * 16 15 14 18 18 N 1.34782 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00524 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99204 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00246 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99815 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99919 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47146 * 60.00194 * 23 21 19 25 25 H 1.48498 * 109.46934 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47206 * 300.00087 * 23 21 19 27 27 C 1.34171 * 125.44074 * 180.02562 * 2 1 3 28 28 C 1.50705 * 127.02099 * 359.97438 * 27 2 1 29 29 H 1.09006 * 109.47080 * 269.95023 * 1 2 3 30 30 H 1.08997 * 109.47149 * 29.95338 * 1 2 3 31 31 H 1.08997 * 109.46927 * 149.95429 * 1 2 3 32 32 H 1.08993 * 109.47310 * 270.16736 * 5 4 3 33 33 H 1.08998 * 109.46916 * 30.17567 * 5 4 3 34 34 H 1.09006 * 109.46559 * 150.16786 * 5 4 3 35 35 H 0.97000 * 119.99736 * 0.27091 * 9 7 6 36 36 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 37 37 H 1.08997 * 109.47029 * 59.99499 * 10 9 7 38 38 H 1.09006 * 109.46999 * 59.99848 * 13 11 10 39 39 H 1.09001 * 109.47413 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47448 * 299.99933 * 13 11 10 41 41 H 1.00903 * 110.99944 * 328.96024 * 14 11 10 42 42 H 1.08993 * 109.46738 * 299.99981 * 15 14 11 43 43 H 1.08998 * 109.47087 * 60.00011 * 15 14 11 44 44 H 0.97006 * 119.99133 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00205 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.47115 * 269.95655 * 28 27 2 47 47 H 1.08998 * 109.47081 * 29.96085 * 28 27 2 48 48 H 1.09001 * 109.46969 * 149.96139 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0936 0.0000 4 6 3.5789 0.7583 0.0044 5 6 4.7389 1.7204 0.0110 6 6 3.6711 -0.6027 -0.0015 7 6 4.9026 -1.4123 -0.0018 8 8 5.4103 -1.7465 -1.0552 9 7 5.4691 -1.7777 1.1652 10 6 6.6966 -2.5774 1.1650 11 6 7.1266 -2.8522 2.6072 12 1 7.3943 -1.9131 3.0918 13 6 8.3356 -3.7898 2.6092 14 7 6.0180 -3.4812 3.3375 15 6 6.1296 -3.2319 4.7809 16 6 4.9774 -3.8904 5.4948 17 8 4.1453 -4.5071 4.8635 18 7 4.8719 -3.7949 6.8351 19 6 3.8240 -4.3944 7.4848 20 1 3.0828 -4.9428 6.9225 21 6 3.7151 -4.2955 8.8665 22 7 4.6168 -3.6278 9.5505 23 14 2.2869 -5.1117 9.7515 24 1 2.3183 -6.5746 9.4979 25 1 2.4000 -4.8603 11.2107 26 1 1.0073 -4.5498 9.2496 27 6 2.2850 -1.0931 -0.0005 28 6 1.8309 -2.5301 -0.0006 29 1 -0.3633 -0.0009 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 5.0207 1.9569 -1.0150 33 1 4.4494 2.6350 0.5284 34 1 5.5857 1.2650 0.5246 35 1 5.0641 -1.5111 2.0054 36 1 6.5144 -3.5224 0.6534 37 1 7.4859 -2.0311 0.6487 38 1 9.1583 -3.3230 2.0674 39 1 8.6422 -3.9853 3.6367 40 1 8.0680 -4.7288 2.1247 41 1 5.1271 -3.1659 2.9839 42 1 7.0690 -3.6440 5.1491 43 1 6.1060 -2.1582 4.9670 44 1 5.5376 -3.3020 7.3400 45 1 4.5410 -3.5590 10.5151 46 1 1.7225 -2.8770 1.0271 47 1 0.8723 -2.6082 -0.5135 48 1 2.5695 -3.1445 -0.5154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480499214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:16 Heat of formation + Delta-G solvation = -70.047372 kcal Electronic energy + Delta-G solvation = -29191.949285 eV Core-core repulsion = 25055.146591 eV Total energy + Delta-G solvation = -4136.802695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.76136 -39.70695 -38.41075 -36.95884 -34.43100 -34.13823 -33.75829 -33.19459 -31.33091 -30.83487 -29.97278 -28.40162 -26.86848 -26.22353 -24.67940 -23.99282 -22.92534 -20.68552 -20.27976 -19.51983 -19.21550 -17.94695 -17.45762 -16.79578 -16.33011 -16.10475 -15.94780 -15.49248 -15.24226 -14.76028 -14.50278 -14.25722 -14.00280 -13.82545 -13.72773 -13.53188 -13.38425 -13.12358 -12.99916 -12.92544 -12.81907 -12.64783 -12.55712 -12.41303 -12.33113 -11.92099 -11.77326 -11.68864 -11.45294 -11.41734 -11.08545 -10.88953 -10.46518 -10.24057 -10.22067 -9.54554 -9.52859 -9.24451 -8.50346 -8.46030 -8.15599 -7.99277 -6.44521 -3.85434 1.41059 2.04422 2.39660 2.54422 3.11042 3.17959 3.23975 3.28230 3.86784 4.01995 4.21652 4.26114 4.54734 4.65394 4.66462 4.85925 4.95841 4.97809 5.07175 5.11072 5.16077 5.20478 5.22217 5.26672 5.30892 5.47090 5.50047 5.54540 5.62661 5.66056 5.70568 5.75379 5.80471 5.80592 5.93177 5.95490 5.97115 6.15508 6.23167 6.31830 6.34406 6.92580 7.12668 7.28149 7.52282 7.54582 8.02883 8.04025 8.58025 9.14859 9.50884 10.02265 10.73086 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009734 B = 0.002869 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.960195 B = 9758.534754 C =11572.343255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 O -0.172 6.172 4 C 0.040 3.960 5 C -0.077 4.077 6 C -0.228 4.228 7 C 0.598 3.402 8 O -0.532 6.532 9 N -0.722 5.722 10 C 0.117 3.883 11 C 0.072 3.928 12 H 0.049 0.951 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.049 3.951 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.141 4.141 28 C -0.088 4.088 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.401 0.599 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.348 0.652 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 11.019 -16.671 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 O -0.069 6.069 4 C -0.012 4.012 5 C -0.134 4.134 6 C -0.232 4.232 7 C 0.383 3.617 8 O -0.409 6.409 9 N -0.374 5.374 10 C -0.006 4.006 11 C -0.039 4.039 12 H 0.067 0.933 13 C -0.196 4.196 14 N -0.299 5.299 15 C -0.083 4.083 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.143 4.143 28 C -0.145 4.145 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.237 0.763 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.169 0.831 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.854 10.052 -17.610 20.295 hybrid contribution -0.588 0.822 1.429 1.750 sum 0.267 10.874 -16.181 19.497 Atomic orbital electron populations 1.20330 0.84647 1.04006 1.03831 1.21991 0.93805 0.83120 1.07426 1.83646 1.15846 1.35275 1.72139 1.22414 0.83405 0.93200 1.02177 1.20412 0.91535 0.97283 1.04151 1.20960 0.93975 0.93143 1.15133 1.17239 0.82246 0.78606 0.83562 1.90798 1.63538 1.55256 1.31300 1.46076 1.27807 1.54918 1.08641 1.21654 0.85951 0.96065 0.96945 1.21810 0.93395 0.96400 0.92267 0.93328 1.21735 0.95497 0.99794 1.02578 1.60127 1.05122 1.62411 1.02228 1.21755 0.99771 0.98225 0.88585 1.19786 0.88278 0.86345 0.83136 1.90530 1.43915 1.46111 1.66079 1.41853 1.25321 1.47731 1.04991 1.19654 1.03658 1.29849 0.89833 0.87970 1.25256 0.98618 0.97430 0.96553 1.69601 1.35018 1.41441 1.08242 0.85922 0.80870 0.79656 0.77809 1.19851 1.20961 1.19905 1.21074 0.89858 0.96643 1.06698 1.20259 1.01314 0.89854 1.03057 0.89766 0.90562 0.89197 0.89386 0.89769 0.89323 0.76346 0.90156 0.90674 0.92481 0.91948 0.91480 0.83111 0.89369 0.93908 0.77480 0.91796 0.90339 0.91187 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.21 36.01 0.37 -0.17 16 2 C -0.01 -0.17 7.28 -35.74 -0.26 -0.43 16 3 O -0.17 -2.06 10.52 7.64 0.08 -1.98 16 4 C 0.04 0.46 7.37 -34.96 -0.26 0.21 16 5 C -0.08 -0.62 10.24 36.01 0.37 -0.25 16 6 C -0.23 -3.02 6.07 -103.27 -0.63 -3.65 16 7 C 0.60 8.39 7.25 -12.54 -0.09 8.30 16 8 O -0.53 -9.11 17.11 5.27 0.09 -9.02 16 9 N -0.72 -8.70 4.99 -61.41 -0.31 -9.00 16 10 C 0.12 1.35 5.31 -4.05 -0.02 1.33 16 11 C 0.07 0.83 2.81 -67.72 -0.19 0.64 16 12 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 13 C -0.14 -1.47 9.41 37.16 0.35 -1.12 16 14 N -0.66 -10.21 5.93 -108.00 -0.64 -10.85 16 15 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 16 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 17 O -0.58 -15.51 15.78 5.54 0.09 -15.42 16 18 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 23 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C -0.14 -1.78 6.38 -102.49 -0.65 -2.44 16 28 C -0.09 -1.00 10.15 36.01 0.37 -0.64 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.55 7.14 -51.93 -0.37 0.18 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.67 7.93 -51.93 -0.41 0.26 16 35 H 0.40 4.59 7.36 -40.82 -0.30 4.29 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.35 5.60 6.41 -39.29 -0.25 5.35 16 42 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 43 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 44 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.63 7.15 -51.93 -0.37 0.26 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -34.11 406.49 -7.29 -41.40 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -7.36 Total: 15.78 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.01 Total: 4.70 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.28 Total: -57.38 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.26 Total: -26.42 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.11 -7.29 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480499214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.644 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds