Wall clock time and date at job start Tue Mar 31 2020 20:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34221 * 125.43367 * 2 1 4 4 C 1.33652 * 110.90330 * 179.80037 * 3 2 1 5 5 C 1.50707 * 125.79726 * 180.24714 * 4 3 2 6 6 C 1.36413 * 108.40121 * 0.39185 * 4 3 2 7 7 C 1.47380 * 127.19411 * 179.89170 * 6 4 3 8 8 O 1.21613 * 120.00125 * 269.68588 * 7 6 4 9 9 N 1.34777 * 119.99852 * 89.41194 * 7 6 4 10 10 C 1.46499 * 120.00195 * 180.27819 * 9 7 6 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47106 * 294.99556 * 11 10 9 13 13 C 1.52999 * 109.47251 * 174.99822 * 11 10 9 14 14 N 1.46896 * 109.47747 * 54.99572 * 11 10 9 15 15 C 1.46901 * 111.00608 * 205.00193 * 14 11 10 16 16 C 1.50696 * 109.47032 * 179.97438 * 15 14 11 17 17 O 1.21295 * 120.00285 * 0.02562 * 16 15 14 18 18 N 1.34782 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00524 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99204 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00246 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99815 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99919 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47146 * 60.00194 * 23 21 19 25 25 H 1.48498 * 109.46934 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47206 * 300.00087 * 23 21 19 27 27 C 1.34171 * 125.44074 * 180.02562 * 2 1 3 28 28 C 1.50705 * 127.02099 * 359.97438 * 27 2 1 29 29 H 1.09006 * 109.47080 * 269.95023 * 1 2 3 30 30 H 1.08997 * 109.47149 * 29.95338 * 1 2 3 31 31 H 1.08997 * 109.46927 * 149.95429 * 1 2 3 32 32 H 1.08993 * 109.47310 * 270.16736 * 5 4 3 33 33 H 1.08998 * 109.46916 * 30.17567 * 5 4 3 34 34 H 1.09006 * 109.46559 * 150.16786 * 5 4 3 35 35 H 0.97000 * 119.99736 * 0.27091 * 9 7 6 36 36 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 37 37 H 1.08997 * 109.47029 * 59.99499 * 10 9 7 38 38 H 1.09006 * 109.46999 * 59.99848 * 13 11 10 39 39 H 1.09001 * 109.47413 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47448 * 299.99933 * 13 11 10 41 41 H 1.00903 * 110.99944 * 328.96024 * 14 11 10 42 42 H 1.08993 * 109.46738 * 299.99981 * 15 14 11 43 43 H 1.08998 * 109.47087 * 60.00011 * 15 14 11 44 44 H 0.97006 * 119.99133 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00205 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.47115 * 269.95655 * 28 27 2 47 47 H 1.08998 * 109.47081 * 29.96085 * 28 27 2 48 48 H 1.09001 * 109.46969 * 149.96139 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0936 0.0000 4 6 3.5789 0.7583 0.0044 5 6 4.7389 1.7204 0.0110 6 6 3.6711 -0.6027 -0.0015 7 6 4.9026 -1.4123 -0.0018 8 8 5.4103 -1.7465 -1.0552 9 7 5.4691 -1.7777 1.1652 10 6 6.6966 -2.5774 1.1650 11 6 7.1266 -2.8522 2.6072 12 1 7.3943 -1.9131 3.0918 13 6 8.3356 -3.7898 2.6092 14 7 6.0180 -3.4812 3.3375 15 6 6.1296 -3.2319 4.7809 16 6 4.9774 -3.8904 5.4948 17 8 4.1453 -4.5071 4.8635 18 7 4.8719 -3.7949 6.8351 19 6 3.8240 -4.3944 7.4848 20 1 3.0828 -4.9428 6.9225 21 6 3.7151 -4.2955 8.8665 22 7 4.6168 -3.6278 9.5505 23 14 2.2869 -5.1117 9.7515 24 1 2.3183 -6.5746 9.4979 25 1 2.4000 -4.8603 11.2107 26 1 1.0073 -4.5498 9.2496 27 6 2.2850 -1.0931 -0.0005 28 6 1.8309 -2.5301 -0.0006 29 1 -0.3633 -0.0009 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 5.0207 1.9569 -1.0150 33 1 4.4494 2.6350 0.5284 34 1 5.5857 1.2650 0.5246 35 1 5.0641 -1.5111 2.0054 36 1 6.5144 -3.5224 0.6534 37 1 7.4859 -2.0311 0.6487 38 1 9.1583 -3.3230 2.0674 39 1 8.6422 -3.9853 3.6367 40 1 8.0680 -4.7288 2.1247 41 1 5.1271 -3.1659 2.9839 42 1 7.0690 -3.6440 5.1491 43 1 6.1060 -2.1582 4.9670 44 1 5.5376 -3.3020 7.3400 45 1 4.5410 -3.5590 10.5151 46 1 1.7225 -2.8770 1.0271 47 1 0.8723 -2.6082 -0.5135 48 1 2.5695 -3.1445 -0.5154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480499214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:15 Heat of formation + Delta-G solvation = -95.146240 kcal Electronic energy + Delta-G solvation = -29193.037654 eV Core-core repulsion = 25055.146591 eV Total energy + Delta-G solvation = -4137.891063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.64864 -40.81628 -40.12735 -38.21259 -35.98134 -35.32753 -35.00367 -34.05345 -33.27113 -32.03652 -30.63803 -29.28030 -28.16491 -27.50882 -25.81669 -25.35983 -23.88606 -21.70978 -21.28766 -21.09263 -20.32645 -19.90349 -18.48794 -17.85516 -17.59162 -17.11554 -17.02549 -16.91050 -16.48854 -16.33439 -15.92742 -15.54309 -15.36841 -14.98572 -14.71795 -14.42365 -14.36385 -14.26867 -13.93885 -13.76290 -13.73979 -13.57405 -13.52399 -13.47887 -13.32069 -13.27486 -13.01221 -12.94639 -12.81965 -12.58937 -12.42475 -12.28135 -12.12467 -11.91163 -11.49891 -11.33406 -10.50634 -10.34600 -10.28551 -10.01265 -9.38981 -9.31285 -8.46474 -5.94991 0.53352 1.12130 1.31806 1.39744 1.42079 1.52579 1.72273 2.05322 2.13252 2.29085 2.86079 3.21065 3.42984 3.47388 3.60038 3.70838 3.85050 4.05184 4.15344 4.23865 4.27180 4.35529 4.37782 4.44725 4.52821 4.57980 4.59381 4.60362 4.62826 4.74344 4.77558 4.78911 4.84363 4.93270 4.95157 5.00838 5.04323 5.17266 5.20988 5.40960 5.44228 5.46542 5.87333 6.04381 6.08406 6.25804 6.31395 6.60417 6.98394 7.12969 7.56574 8.12048 8.70594 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009734 B = 0.002869 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.960195 B = 9758.534754 C =11572.343255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 O -0.177 6.177 4 C 0.043 3.957 5 C -0.078 4.078 6 C -0.260 4.260 7 C 0.602 3.398 8 O -0.570 6.570 9 N -0.712 5.712 10 C 0.121 3.879 11 C 0.078 3.922 12 H 0.071 0.929 13 C -0.136 4.136 14 N -0.680 5.680 15 C 0.064 3.936 16 C 0.436 3.564 17 O -0.623 6.623 18 N -0.571 5.571 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.170 4.170 28 C -0.083 4.083 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.405 0.595 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.341 0.659 42 H 0.107 0.893 43 H 0.071 0.929 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 12.429 -16.336 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 O -0.075 6.075 4 C -0.009 4.009 5 C -0.134 4.134 6 C -0.264 4.264 7 C 0.389 3.611 8 O -0.450 6.450 9 N -0.363 5.363 10 C -0.002 4.002 11 C -0.031 4.031 12 H 0.089 0.911 13 C -0.195 4.195 14 N -0.315 5.315 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.509 6.509 18 N -0.209 5.209 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.172 4.172 28 C -0.140 4.140 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.241 0.759 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.161 0.839 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.112 0.888 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.158 11.479 -17.250 20.752 hybrid contribution -0.654 0.395 1.278 1.489 sum 0.504 11.874 -15.972 19.908 Atomic orbital electron populations 1.20521 0.82042 1.05479 1.04779 1.22640 0.95258 0.82521 1.05885 1.83672 1.16109 1.35609 1.72073 1.23023 0.84045 0.93325 1.00537 1.20589 0.90295 0.97338 1.05170 1.21095 0.93983 0.94095 1.17228 1.17358 0.82246 0.78196 0.83347 1.90766 1.64703 1.56941 1.32548 1.46030 1.27781 1.54197 1.08325 1.21668 0.86080 0.95449 0.97005 1.21874 0.92275 0.97308 0.91632 0.91124 1.21747 0.95777 0.99228 1.02708 1.60134 1.05981 1.63732 1.01670 1.21619 0.97269 0.99116 0.88804 1.20884 0.89052 0.85114 0.82569 1.90502 1.45919 1.47711 1.66811 1.41910 1.25063 1.48094 1.05803 1.19619 1.04702 1.31427 0.90662 0.90391 1.25999 1.00879 0.97569 0.96639 1.69658 1.35999 1.41682 1.08692 0.85027 0.77894 0.78510 0.77165 1.19851 1.19492 1.19617 1.21326 0.90093 0.97469 1.08268 1.20215 1.01994 0.89205 1.02546 0.88931 0.89021 0.87797 0.88353 0.87752 0.88838 0.75869 0.91884 0.88970 0.89821 0.92152 0.92800 0.83881 0.87539 0.91114 0.76950 0.91289 0.91219 0.88798 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.21 71.24 0.73 -0.24 16 2 C -0.01 -0.32 7.28 24.76 0.18 -0.14 16 3 O -0.18 -4.10 10.52 4.41 0.05 -4.05 16 4 C 0.04 0.96 7.37 25.26 0.19 1.15 16 5 C -0.08 -1.13 10.24 71.24 0.73 -0.40 16 6 C -0.26 -6.96 6.07 -18.99 -0.12 -7.07 16 7 C 0.60 17.12 7.25 86.65 0.63 17.75 16 8 O -0.57 -19.92 17.11 -4.07 -0.07 -19.99 16 9 N -0.71 -16.92 4.99 -466.44 -2.33 -19.24 16 10 C 0.12 2.66 5.31 86.38 0.46 3.12 16 11 C 0.08 1.66 2.81 44.91 0.13 1.78 16 12 H 0.07 1.25 7.80 -2.38 -0.02 1.23 16 13 C -0.14 -2.61 9.41 71.98 0.68 -1.94 16 14 N -0.68 -20.26 5.93 -495.61 -2.94 -23.19 16 15 C 0.06 2.06 5.97 85.56 0.51 2.57 16 16 C 0.44 20.18 7.82 87.65 0.69 20.87 16 17 O -0.62 -33.98 15.78 -3.08 -0.05 -34.03 16 18 N -0.57 -28.64 5.29 -306.98 -1.62 -30.27 16 19 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 22 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16 23 Si 0.99 42.39 29.55 68.60 2.03 44.41 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 C -0.17 -4.34 6.38 -18.49 -0.12 -4.46 16 28 C -0.08 -1.94 10.15 71.24 0.72 -1.22 16 29 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.09 7.14 -2.39 -0.02 1.07 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.26 7.93 -2.38 -0.02 1.25 16 35 H 0.41 9.08 7.36 -92.71 -0.68 8.40 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.34 10.92 6.41 -89.69 -0.58 10.35 16 42 H 0.11 3.08 7.44 -2.39 -0.02 3.06 16 43 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 44 H 0.40 18.79 7.90 -92.70 -0.73 18.05 16 45 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.09 1.65 7.15 -2.39 -0.02 1.63 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.26 406.49 1.05 -74.21 By element: Atomic # 1 Polarization: 47.99 SS G_CDS: -0.98 Total: 47.01 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.68 Total: 13.71 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.60 Total: -121.27 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -0.07 Total: -58.07 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -75.26 1.05 -74.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480499214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.939 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds