Wall clock time and date at job start Tue Mar 31 2020 19:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34323 * 126.44126 * 2 1 4 4 N 1.34479 * 107.66715 * 179.72045 * 3 2 1 5 5 C 1.30255 * 108.70113 * 0.42785 * 4 3 2 6 6 C 1.50703 * 125.62019 * 179.84019 * 5 4 3 7 7 O 1.42898 * 109.47404 * 89.68661 * 6 5 4 8 8 C 1.42901 * 113.99732 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46552 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00608 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99526 * 180.02562 * 9 8 7 12 12 C 1.46919 * 120.63188 * 359.97438 * 11 9 8 13 13 C 1.53195 * 108.89273 * 233.51696 * 12 11 9 14 14 C 1.53070 * 109.29524 * 305.57804 * 13 12 11 15 15 H 1.09007 * 109.35101 * 301.12962 * 14 13 12 16 16 N 1.46499 * 109.45427 * 181.24460 * 14 13 12 17 17 C 1.36928 * 120.00250 * 84.79108 * 16 14 13 18 18 H 1.08000 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00515 * 180.02562 * 17 16 14 20 20 N 1.31626 * 119.99431 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00596 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47200 * 59.99138 * 21 19 17 23 23 H 1.48495 * 109.47377 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46835 * 299.99442 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 14 13 12 26 26 H 1.09001 * 109.49731 * 58.65147 * 25 14 13 27 27 C 1.53005 * 109.49929 * 178.74923 * 25 14 13 28 28 C 1.46928 * 120.62829 * 179.97438 * 11 9 8 29 29 O 1.33970 * 108.76174 * 359.56691 * 5 4 3 30 30 H 1.09005 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47548 * 300.00138 * 1 2 3 32 32 H 1.08994 * 109.47400 * 60.00348 * 1 2 3 33 33 H 1.07997 * 126.17189 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47005 * 329.68570 * 6 5 4 35 35 H 1.08996 * 109.47058 * 209.68900 * 6 5 4 36 36 H 1.08996 * 109.47096 * 60.00396 * 8 7 6 37 37 H 1.08994 * 109.47347 * 299.99852 * 8 7 6 38 38 H 1.09002 * 109.58751 * 353.37646 * 12 11 9 39 39 H 1.08996 * 109.58750 * 113.65831 * 12 11 9 40 40 H 1.08997 * 109.50046 * 65.38734 * 13 12 11 41 41 H 1.09003 * 109.49733 * 185.48713 * 13 12 11 42 42 H 0.97007 * 119.99658 * 264.78640 * 16 14 13 43 43 H 0.97006 * 119.99397 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.47522 * 179.84157 * 27 25 14 45 45 H 1.09006 * 109.47027 * 299.84067 * 27 25 14 46 46 H 1.08998 * 109.46892 * 59.83549 * 27 25 14 47 47 H 1.08998 * 109.58787 * 246.20220 * 28 11 9 48 48 H 1.08999 * 109.58470 * 6.62573 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0063 5 6 3.5765 -0.6547 0.0008 6 6 4.8005 -1.5340 0.0015 7 8 5.1869 -1.8116 1.3489 8 6 6.3435 -2.6431 1.4622 9 6 6.6582 -2.8699 2.9185 10 8 5.9611 -2.3685 3.7749 11 7 7.7152 -3.6293 3.2691 12 6 8.5693 -4.2430 2.2432 13 6 8.6664 -5.7477 2.5137 14 6 9.1437 -5.9735 3.9505 15 1 10.1143 -5.4968 4.0878 16 7 9.2663 -7.4112 4.2036 17 6 10.4129 -8.0728 3.8535 18 1 11.2268 -7.5347 3.3904 19 6 10.5289 -9.4352 4.0928 20 7 9.5368 -10.0910 4.6568 21 14 12.0929 -10.3378 3.6146 22 1 13.2467 -9.7467 4.3388 23 1 11.9659 -11.7729 3.9742 24 1 12.3096 -10.2110 2.1509 25 6 8.1351 -5.3677 4.9292 26 1 7.1584 -5.8265 4.7756 27 6 8.5999 -5.6226 6.3645 28 6 8.0351 -3.8591 4.6846 29 8 2.3075 -1.0841 0.0006 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.9822 2.1112 -0.0004 34 1 5.6150 -1.0233 -0.5122 35 1 4.5765 -2.4689 -0.5122 36 1 7.1901 -2.1558 0.9788 37 1 6.1511 -3.6010 0.9790 38 1 8.1341 -4.0762 1.2578 39 1 9.5642 -3.7996 2.2829 40 1 7.6858 -6.2051 2.3821 41 1 9.3746 -6.1975 1.8178 42 1 8.5351 -7.8946 4.6193 43 1 9.6181 -11.0430 4.8244 44 1 7.8828 -5.1885 7.0612 45 1 8.6708 -6.6964 6.5381 46 1 9.5773 -5.1647 6.5166 47 1 8.9871 -3.3861 4.9255 48 1 7.2474 -3.4390 5.3100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482424421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:11 Heat of formation + Delta-G solvation = -40.607811 kcal Electronic energy + Delta-G solvation = -28815.765437 eV Core-core repulsion = 24680.239337 eV Total energy + Delta-G solvation = -4135.526099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.65797 -40.24204 -38.38770 -37.31021 -35.05986 -34.66269 -33.16658 -32.90544 -31.51889 -30.14644 -29.35945 -28.14730 -26.00711 -25.41841 -24.70326 -22.82898 -22.65340 -21.69467 -21.44398 -20.05763 -19.08136 -17.93295 -17.40526 -17.11346 -16.94690 -16.58336 -16.36784 -15.63301 -15.08702 -15.05241 -14.86675 -14.45940 -14.14181 -13.86947 -13.79304 -13.54868 -13.45452 -13.33436 -13.17085 -12.78558 -12.61003 -12.46858 -12.25513 -12.12103 -11.77829 -11.63723 -11.61245 -11.20272 -10.95944 -10.86849 -10.84108 -10.66849 -10.43281 -10.25855 -10.20564 -9.80365 -9.69268 -9.64703 -9.07870 -8.93466 -8.52677 -7.00240 -5.80644 -3.09600 0.96599 2.05794 2.33232 2.59421 2.79333 3.40092 3.45015 3.46158 3.47802 3.95023 4.33785 4.44462 4.54476 4.59526 4.62718 4.71190 4.81031 4.89415 4.94694 5.00137 5.03199 5.15255 5.22194 5.24471 5.30646 5.48481 5.48730 5.53696 5.65708 5.68937 5.75406 5.92754 5.93807 6.05596 6.10805 6.25479 6.32940 6.40509 6.42593 6.56262 6.62588 6.77192 6.90028 7.01489 7.37730 7.42962 7.64695 8.18507 8.37478 9.48841 10.06237 10.41026 11.41644 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.001906 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.555335 B =14683.411208 C =15040.361622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.046 4.046 4 N -0.459 5.459 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.357 6.357 8 C 0.046 3.954 9 C 0.516 3.484 10 O -0.526 6.526 11 N -0.605 5.605 12 C 0.105 3.895 13 C -0.153 4.153 14 C 0.183 3.817 15 H 0.048 0.952 16 N -0.720 5.720 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.110 4.110 26 H 0.069 0.931 27 C -0.136 4.136 28 C 0.122 3.878 29 O -0.193 6.193 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 19.760 -11.209 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 C -0.185 4.185 4 N -0.189 5.189 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.275 6.275 8 C -0.033 4.033 9 C 0.303 3.697 10 O -0.402 6.402 11 N -0.340 5.340 12 C -0.018 4.018 13 C -0.194 4.194 14 C 0.073 3.927 15 H 0.066 0.934 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.130 4.130 26 H 0.088 0.912 27 C -0.194 4.194 28 C 0.000 4.000 29 O -0.080 6.080 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.462 20.309 -10.614 26.085 hybrid contribution 0.186 -1.271 -0.478 1.371 sum -12.277 19.038 -11.093 25.223 Atomic orbital electron populations 1.20321 0.83734 1.04610 1.04027 1.23589 0.95219 0.84524 1.05913 1.23105 0.87599 1.00542 1.07259 1.70414 1.23309 1.09053 1.16140 1.25516 0.83890 0.89919 1.02479 1.20482 0.89058 0.96509 0.85646 1.88066 1.45783 1.69792 1.23848 1.22333 0.89205 0.95887 0.95882 1.20018 0.80549 0.79022 0.90148 1.90720 1.48782 1.49041 1.51676 1.48090 1.28240 1.49465 1.08160 1.21913 0.94502 0.95362 0.90039 1.22709 1.02493 0.92285 1.01916 1.20197 0.95429 0.86801 0.90276 0.93374 1.42400 1.18322 1.02335 1.72986 1.19164 0.93741 0.91015 1.33168 0.91269 1.24738 0.97811 0.96681 1.01625 1.69654 1.31413 1.08507 1.48402 0.86292 0.82987 0.78943 0.78078 1.21307 1.21759 1.21337 1.21740 1.00484 0.93855 0.96932 0.91213 1.21658 1.00030 1.03475 0.94226 1.21720 1.01365 0.96435 0.80519 1.84407 1.17713 1.36602 1.69248 0.90175 0.89043 0.89164 0.79702 0.88374 0.89785 0.89597 0.89496 0.90751 0.91102 0.92122 0.90402 0.78194 0.93455 0.93781 0.90726 0.93014 0.91398 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 36.01 0.38 0.05 16 2 C -0.04 -0.36 7.39 -35.69 -0.26 -0.62 16 3 C -0.05 -0.45 11.80 -17.77 -0.21 -0.66 16 4 N -0.46 -5.79 11.29 -11.10 -0.13 -5.91 16 5 C 0.19 2.24 7.97 -12.95 -0.10 2.14 16 6 C 0.16 1.48 6.56 36.01 0.24 1.72 16 7 O -0.36 -4.61 9.86 -55.14 -0.54 -5.15 16 8 C 0.05 0.49 4.76 36.01 0.17 0.66 16 9 C 0.52 7.54 7.78 -10.98 -0.09 7.45 16 10 O -0.53 -9.97 15.91 -14.35 -0.23 -10.19 16 11 N -0.60 -8.20 2.97 -172.79 -0.51 -8.71 16 12 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 13 C -0.15 -2.36 5.67 -26.59 -0.15 -2.51 16 14 C 0.18 3.33 2.19 -67.87 -0.15 3.18 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 N -0.72 -16.82 4.41 -53.37 -0.24 -17.06 16 17 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 C -0.11 -1.78 2.46 -90.52 -0.22 -2.00 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 C -0.14 -2.19 9.02 37.16 0.34 -1.85 16 28 C 0.12 1.75 5.71 -3.73 -0.02 1.73 16 29 O -0.19 -2.26 10.78 5.35 0.06 -2.20 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.64 7.94 -51.93 -0.41 0.23 16 37 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.07 0.64 5.93 -51.93 -0.31 0.33 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.38 9.76 7.50 -40.82 -0.31 9.45 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.09 1.36 7.01 -51.93 -0.36 1.00 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -35.51 396.09 -7.91 -43.41 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.63 Total: 6.14 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.36 Total: 3.60 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.15 Total: -58.24 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.71 Total: -17.55 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.51 -7.91 -43.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482424421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.807 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds