Wall clock time and date at job start Tue Mar 31 2020 19:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34323 * 126.44126 * 2 1 4 4 N 1.34479 * 107.66715 * 179.72045 * 3 2 1 5 5 C 1.30255 * 108.70113 * 0.42785 * 4 3 2 6 6 C 1.50703 * 125.62019 * 179.84019 * 5 4 3 7 7 O 1.42898 * 109.47404 * 89.68661 * 6 5 4 8 8 C 1.42901 * 113.99732 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46552 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00608 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99526 * 180.02562 * 9 8 7 12 12 C 1.46919 * 120.63188 * 359.97438 * 11 9 8 13 13 C 1.53195 * 108.89273 * 233.51696 * 12 11 9 14 14 C 1.53070 * 109.29524 * 305.57804 * 13 12 11 15 15 H 1.09007 * 109.35101 * 301.12962 * 14 13 12 16 16 N 1.46499 * 109.45427 * 181.24460 * 14 13 12 17 17 C 1.36928 * 120.00250 * 84.79108 * 16 14 13 18 18 H 1.08000 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00515 * 180.02562 * 17 16 14 20 20 N 1.31626 * 119.99431 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00596 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47200 * 59.99138 * 21 19 17 23 23 H 1.48495 * 109.47377 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46835 * 299.99442 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 14 13 12 26 26 H 1.09001 * 109.49731 * 58.65147 * 25 14 13 27 27 C 1.53005 * 109.49929 * 178.74923 * 25 14 13 28 28 C 1.46928 * 120.62829 * 179.97438 * 11 9 8 29 29 O 1.33970 * 108.76174 * 359.56691 * 5 4 3 30 30 H 1.09005 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47548 * 300.00138 * 1 2 3 32 32 H 1.08994 * 109.47400 * 60.00348 * 1 2 3 33 33 H 1.07997 * 126.17189 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47005 * 329.68570 * 6 5 4 35 35 H 1.08996 * 109.47058 * 209.68900 * 6 5 4 36 36 H 1.08996 * 109.47096 * 60.00396 * 8 7 6 37 37 H 1.08994 * 109.47347 * 299.99852 * 8 7 6 38 38 H 1.09002 * 109.58751 * 353.37646 * 12 11 9 39 39 H 1.08996 * 109.58750 * 113.65831 * 12 11 9 40 40 H 1.08997 * 109.50046 * 65.38734 * 13 12 11 41 41 H 1.09003 * 109.49733 * 185.48713 * 13 12 11 42 42 H 0.97007 * 119.99658 * 264.78640 * 16 14 13 43 43 H 0.97006 * 119.99397 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.47522 * 179.84157 * 27 25 14 45 45 H 1.09006 * 109.47027 * 299.84067 * 27 25 14 46 46 H 1.08998 * 109.46892 * 59.83549 * 27 25 14 47 47 H 1.08998 * 109.58787 * 246.20220 * 28 11 9 48 48 H 1.08999 * 109.58470 * 6.62573 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5781 0.6478 0.0063 5 6 3.5765 -0.6547 0.0008 6 6 4.8005 -1.5340 0.0015 7 8 5.1869 -1.8116 1.3489 8 6 6.3435 -2.6431 1.4622 9 6 6.6582 -2.8699 2.9185 10 8 5.9611 -2.3685 3.7749 11 7 7.7152 -3.6293 3.2691 12 6 8.5693 -4.2430 2.2432 13 6 8.6664 -5.7477 2.5137 14 6 9.1437 -5.9735 3.9505 15 1 10.1143 -5.4968 4.0878 16 7 9.2663 -7.4112 4.2036 17 6 10.4129 -8.0728 3.8535 18 1 11.2268 -7.5347 3.3904 19 6 10.5289 -9.4352 4.0928 20 7 9.5368 -10.0910 4.6568 21 14 12.0929 -10.3378 3.6146 22 1 13.2467 -9.7467 4.3388 23 1 11.9659 -11.7729 3.9742 24 1 12.3096 -10.2110 2.1509 25 6 8.1351 -5.3677 4.9292 26 1 7.1584 -5.8265 4.7756 27 6 8.5999 -5.6226 6.3645 28 6 8.0351 -3.8591 4.6846 29 8 2.3075 -1.0841 0.0006 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.9822 2.1112 -0.0004 34 1 5.6150 -1.0233 -0.5122 35 1 4.5765 -2.4689 -0.5122 36 1 7.1901 -2.1558 0.9788 37 1 6.1511 -3.6010 0.9790 38 1 8.1341 -4.0762 1.2578 39 1 9.5642 -3.7996 2.2829 40 1 7.6858 -6.2051 2.3821 41 1 9.3746 -6.1975 1.8178 42 1 8.5351 -7.8946 4.6193 43 1 9.6181 -11.0430 4.8244 44 1 7.8828 -5.1885 7.0612 45 1 8.6708 -6.6964 6.5381 46 1 9.5773 -5.1647 6.5166 47 1 8.9871 -3.3861 4.9255 48 1 7.2474 -3.4390 5.3100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482424421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:10 Heat of formation + Delta-G solvation = -66.561025 kcal Electronic energy + Delta-G solvation = -28816.890853 eV Core-core repulsion = 24680.239337 eV Total energy + Delta-G solvation = -4136.651515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.40370 -41.35967 -39.41752 -38.45076 -36.17510 -35.85020 -34.51206 -33.71448 -33.04365 -31.13051 -30.70882 -29.04117 -27.18993 -26.44082 -25.93846 -24.31501 -23.38986 -23.05950 -22.18257 -21.35052 -20.26639 -19.03583 -18.76735 -18.19298 -17.84564 -17.43455 -17.24927 -16.78610 -16.53669 -16.02047 -15.81291 -15.61650 -15.43697 -15.24706 -14.95015 -14.71671 -14.32358 -14.14957 -14.00735 -13.88703 -13.64559 -13.30759 -13.21619 -13.14188 -13.01600 -12.86722 -12.80010 -12.73199 -12.46342 -12.44788 -12.18608 -12.01457 -11.83338 -11.65618 -11.64291 -11.13533 -10.93573 -10.91645 -10.73923 -9.76522 -9.68880 -8.94008 -7.88811 -5.16242 0.22896 1.33549 1.50318 1.52280 1.52654 1.58245 1.63846 1.85361 2.59966 2.74259 3.18703 3.44278 3.55136 3.77042 3.80488 3.84287 4.00166 4.03453 4.06362 4.10664 4.17262 4.21515 4.26898 4.33401 4.42387 4.47031 4.52388 4.61683 4.67395 4.68024 4.79626 4.81963 4.85970 4.98617 5.00041 5.03226 5.14370 5.18722 5.25837 5.32188 5.41713 5.51989 5.57718 5.64935 5.84461 6.32169 6.38022 6.62139 7.10760 7.38930 8.15741 8.38476 9.34553 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.001906 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.555335 B =14683.411208 C =15040.361622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.066 4.066 4 N -0.488 5.488 5 C 0.165 3.835 6 C 0.159 3.841 7 O -0.396 6.396 8 C 0.049 3.951 9 C 0.509 3.491 10 O -0.580 6.580 11 N -0.603 5.603 12 C 0.111 3.889 13 C -0.144 4.144 14 C 0.177 3.823 15 H 0.050 0.950 16 N -0.732 5.732 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.968 3.032 22 H -0.280 1.280 23 H -0.303 1.303 24 H -0.277 1.277 25 C -0.100 4.100 26 H 0.051 0.949 27 C -0.131 4.131 28 C 0.127 3.873 29 O -0.211 6.211 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.211 0.789 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.369 0.631 43 H 0.247 0.753 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.236 21.543 -13.431 28.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.205 4.205 4 N -0.219 5.219 5 C -0.041 4.041 6 C 0.082 3.918 7 O -0.315 6.315 8 C -0.030 4.030 9 C 0.298 3.702 10 O -0.460 6.460 11 N -0.337 5.337 12 C -0.011 4.011 13 C -0.185 4.185 14 C 0.069 3.931 15 H 0.068 0.932 16 N -0.371 5.371 17 C -0.361 4.361 18 H 0.098 0.902 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.798 3.202 22 H -0.206 1.206 23 H -0.229 1.229 24 H -0.203 1.203 25 C -0.120 4.120 26 H 0.069 0.931 27 C -0.189 4.189 28 C 0.005 3.995 29 O -0.098 6.098 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.228 0.772 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.201 0.799 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.960 22.141 -12.884 28.271 hybrid contribution -0.034 -1.719 0.238 1.736 sum -11.994 20.422 -12.646 26.848 Atomic orbital electron populations 1.20559 0.80698 1.05346 1.05905 1.24445 0.96875 0.83831 1.04207 1.23614 0.87021 1.02055 1.07776 1.70384 1.24852 1.09796 1.16916 1.26138 0.84681 0.90273 1.02989 1.20813 0.88843 0.97731 0.84384 1.88002 1.46819 1.70473 1.26188 1.22479 0.90086 0.97565 0.92844 1.20855 0.79595 0.77985 0.91773 1.90696 1.50447 1.51234 1.53580 1.48168 1.28331 1.49155 1.08025 1.22035 0.95789 0.92005 0.91271 1.22493 1.01293 0.95437 0.99284 1.20462 0.96162 0.83975 0.92535 0.93228 1.42598 1.17166 1.04383 1.72975 1.19575 0.94431 0.91161 1.30925 0.90232 1.25501 1.00704 0.97857 1.03004 1.69824 1.33488 1.08120 1.50872 0.85281 0.79772 0.76989 0.78134 1.20644 1.22943 1.20262 1.21599 0.98826 0.95127 0.96432 0.93084 1.21580 1.01084 1.01333 0.94859 1.21567 1.01867 0.94536 0.81580 1.84410 1.18160 1.37719 1.69501 0.89987 0.87519 0.86712 0.77220 0.86004 0.87087 0.85698 0.86672 0.86580 0.88977 0.93494 0.90932 0.79896 0.94379 0.92034 0.94057 0.92184 0.89613 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.43 71.24 0.74 0.23 16 2 C -0.04 -0.71 7.39 24.79 0.18 -0.53 16 3 C -0.07 -1.26 11.80 83.39 0.98 -0.27 16 4 N -0.49 -12.11 11.29 -303.83 -3.43 -15.54 16 5 C 0.17 3.82 7.97 88.34 0.70 4.52 16 6 C 0.16 2.60 6.56 71.24 0.47 3.07 16 7 O -0.40 -9.52 9.86 -129.94 -1.28 -10.80 16 8 C 0.05 0.86 4.76 71.24 0.34 1.20 16 9 C 0.51 13.91 7.78 87.66 0.68 14.59 16 10 O -0.58 -21.91 15.91 16.01 0.25 -21.66 16 11 N -0.60 -14.90 2.97 -818.98 -2.44 -17.33 16 12 C 0.11 2.14 6.34 86.36 0.55 2.69 16 13 C -0.14 -4.17 5.67 30.68 0.17 -4.00 16 14 C 0.18 6.27 2.19 45.03 0.10 6.37 16 15 H 0.05 1.76 8.08 -2.38 -0.02 1.74 16 16 N -0.73 -34.56 4.41 -322.77 -1.42 -35.99 16 17 C -0.23 -11.94 9.93 84.03 0.83 -11.10 16 18 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 20 N -0.97 -58.47 13.06 21.65 0.28 -58.18 16 21 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 C -0.10 -3.20 2.46 -10.73 -0.03 -3.23 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 27 C -0.13 -4.23 9.02 71.98 0.65 -3.58 16 28 C 0.13 3.50 5.71 86.35 0.49 4.00 16 29 O -0.21 -4.84 10.78 -3.79 -0.04 -4.88 16 30 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.21 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.13 1.21 7.94 -2.39 -0.02 1.20 16 37 H 0.12 1.37 7.69 -2.39 -0.02 1.35 16 38 H 0.12 1.35 5.93 -2.39 -0.01 1.34 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.37 19.43 7.50 -92.70 -0.70 18.74 16 43 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 44 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.61 7.36 -2.38 -0.02 1.59 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 47 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.08 2.35 7.01 -2.39 -0.02 2.34 16 Total: -1.00 -81.32 396.09 1.56 -79.75 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.27 Total: 27.76 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 7.34 Total: 10.04 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -7.01 Total: -127.04 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.07 Total: -37.34 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -81.32 1.56 -79.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482424421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.193 kcal (2) G-P(sol) polarization free energy of solvation -81.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds