Wall clock time and date at job start Tue Mar 31 2020 19:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34330 * 126.44088 * 2 1 4 4 N 1.34485 * 107.66950 * 180.02562 * 3 2 1 5 5 C 1.30260 * 108.69814 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.61801 * 179.97438 * 5 4 3 7 7 O 1.42904 * 109.46862 * 90.02734 * 6 5 4 8 8 C 1.42897 * 113.99901 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47522 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99218 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00303 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.62982 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.77868 * 126.37096 * 12 11 9 14 14 C 1.53040 * 109.31365 * 54.63080 * 13 12 11 15 15 H 1.09001 * 109.46185 * 58.65845 * 14 13 12 16 16 N 1.46496 * 109.45858 * 178.63135 * 14 13 12 17 17 C 1.36932 * 120.00133 * 274.99650 * 16 14 13 18 18 H 1.08001 * 120.00167 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99813 * 180.02562 * 17 16 14 20 20 N 1.31626 * 119.99819 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00358 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47037 * 89.99777 * 21 19 17 23 23 H 1.48499 * 109.47009 * 209.99826 * 21 19 17 24 24 H 1.48501 * 109.46818 * 329.99871 * 21 19 17 25 25 C 1.53047 * 109.53721 * 298.64025 * 14 13 12 26 26 H 1.08997 * 109.49190 * 301.41163 * 25 14 13 27 27 C 1.53006 * 109.49351 * 181.34968 * 25 14 13 28 28 C 1.46928 * 120.63102 * 179.72061 * 11 9 8 29 29 O 1.33967 * 108.75886 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.46700 * 89.99982 * 1 2 3 31 31 H 1.08990 * 109.47109 * 210.00053 * 1 2 3 32 32 H 1.09001 * 109.47371 * 330.00567 * 1 2 3 33 33 H 1.08003 * 126.17092 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.46769 * 210.02116 * 6 5 4 35 35 H 1.09001 * 109.47149 * 330.02647 * 6 5 4 36 36 H 1.09001 * 109.47055 * 300.00038 * 8 7 6 37 37 H 1.09005 * 109.47281 * 59.99498 * 8 7 6 38 38 H 1.09009 * 109.58673 * 246.15384 * 12 11 9 39 39 H 1.09003 * 109.59106 * 6.43738 * 12 11 9 40 40 H 1.08997 * 109.49941 * 174.58556 * 13 12 11 41 41 H 1.09004 * 109.49020 * 294.64911 * 13 12 11 42 42 H 0.97006 * 120.00119 * 95.00082 * 16 14 13 43 43 H 0.96993 * 119.99953 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.47021 * 60.00125 * 27 25 14 45 45 H 1.09006 * 109.46427 * 179.97438 * 27 25 14 46 46 H 1.08996 * 109.47121 * 299.99413 * 27 25 14 47 47 H 1.08997 * 109.58716 * 353.42173 * 28 11 9 48 48 H 1.09000 * 109.58737 * 113.84531 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5783 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0004 6 6 4.8005 -1.5339 -0.0014 7 8 5.1883 -1.8121 1.3456 8 6 6.3449 -2.6437 1.4575 9 6 6.6620 -2.8702 2.9133 10 8 5.9655 -2.3692 3.7705 11 7 7.7186 -3.6303 3.2625 12 6 8.5712 -4.2443 2.2354 13 6 10.0276 -3.8533 2.5052 14 6 10.3971 -4.2364 3.9400 15 1 10.2550 -5.3083 4.0778 16 7 11.7991 -3.8937 4.1910 17 6 12.7914 -4.7699 3.8410 18 1 12.5405 -5.7136 3.3794 19 6 14.1199 -4.4453 4.0793 20 7 15.0738 -5.2874 3.7423 21 14 14.5539 -2.8135 4.8782 22 1 14.5881 -2.9783 6.3536 23 1 15.8866 -2.3668 4.3990 24 1 13.5321 -1.7983 4.5169 25 6 9.5027 -3.4735 4.9199 26 1 9.6259 -2.4015 4.7658 27 6 9.8953 -3.8317 6.3547 28 6 8.0439 -3.8552 4.6776 29 8 2.3075 -1.0839 0.0009 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.9822 2.1113 0.0004 34 1 4.5760 -2.4686 -0.5152 35 1 5.6145 -1.0230 -0.5157 36 1 6.1521 -3.6014 0.9740 37 1 7.1912 -2.1562 0.9733 38 1 8.4703 -5.3289 2.2773 39 1 8.2712 -3.8872 1.2502 40 1 10.6805 -4.3793 1.8086 41 1 10.1459 -2.7778 2.3733 42 1 12.0246 -3.0460 4.6052 43 1 16.0020 -5.0605 3.9085 44 1 10.9366 -3.5585 6.5254 45 1 9.2583 -3.2877 7.0522 46 1 9.7709 -4.9035 6.5086 47 1 7.3979 -3.2396 5.3034 48 1 7.8991 -4.9073 4.9231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482424423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:14 Heat of formation + Delta-G solvation = -36.498171 kcal Electronic energy + Delta-G solvation = -28874.930041 eV Core-core repulsion = 24739.582149 eV Total energy + Delta-G solvation = -4135.347892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.68578 -40.32173 -38.46984 -37.40846 -35.08659 -34.80585 -33.21092 -32.97505 -31.61951 -30.23074 -29.83596 -28.22081 -26.14473 -25.49622 -24.77925 -22.69244 -22.62531 -21.62140 -21.46683 -20.20682 -19.24231 -18.00564 -17.53072 -17.45615 -16.94561 -16.60775 -16.46365 -15.67167 -15.15409 -15.09418 -14.89502 -14.52057 -14.38355 -13.90321 -13.81124 -13.57771 -13.47898 -13.34541 -13.23238 -12.83467 -12.58560 -12.56047 -12.36797 -12.21551 -11.98612 -11.77812 -11.66006 -11.46788 -11.08044 -10.94092 -10.88599 -10.74388 -10.56458 -10.26738 -10.24368 -9.82539 -9.75188 -9.62143 -9.11042 -8.96918 -8.60917 -7.31732 -5.81811 -3.17355 0.93663 2.02980 2.29724 2.53495 2.74116 3.34413 3.37808 3.42942 3.43964 3.91253 4.29968 4.39770 4.55048 4.55795 4.59814 4.68124 4.77073 4.84373 4.90567 4.94508 5.00412 5.03899 5.11049 5.12662 5.19503 5.39903 5.45034 5.46718 5.56942 5.64690 5.65079 5.80308 5.90260 5.93286 5.97611 6.06929 6.22583 6.24190 6.31449 6.43634 6.53959 6.64442 6.73397 6.89645 7.35523 7.36028 7.93498 8.12355 8.37326 9.15488 9.88429 10.08243 11.36360 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.001957 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.939869 B =14301.809958 C =14579.480938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.189 3.811 6 C 0.161 3.839 7 O -0.358 6.358 8 C 0.046 3.954 9 C 0.517 3.483 10 O -0.526 6.526 11 N -0.606 5.606 12 C 0.105 3.895 13 C -0.154 4.154 14 C 0.189 3.811 15 H 0.058 0.942 16 N -0.745 5.745 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.115 4.115 26 H 0.069 0.931 27 C -0.137 4.137 28 C 0.123 3.877 29 O -0.194 6.194 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.186 0.814 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.056 0.944 47 H 0.089 0.911 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.971 6.669 -9.280 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.094 4.094 3 C -0.184 4.184 4 N -0.188 5.188 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.275 6.275 8 C -0.033 4.033 9 C 0.303 3.697 10 O -0.402 6.402 11 N -0.341 5.341 12 C -0.018 4.018 13 C -0.195 4.195 14 C 0.079 3.921 15 H 0.076 0.924 16 N -0.387 5.387 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.712 3.288 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.135 4.135 26 H 0.087 0.913 27 C -0.195 4.195 28 C 0.001 3.999 29 O -0.081 6.081 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.203 0.797 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.745 7.091 -8.727 29.013 hybrid contribution 0.158 0.759 0.204 0.802 sum -26.587 7.850 -8.523 29.002 Atomic orbital electron populations 1.20311 0.83719 1.04683 1.03887 1.23582 0.95196 0.84536 1.06039 1.23141 0.87583 1.00547 1.07105 1.70429 1.23302 1.09056 1.16036 1.25517 0.83850 0.89936 1.02489 1.20488 0.89099 0.96478 0.85612 1.88064 1.45697 1.69835 1.23915 1.22333 0.89321 0.95859 0.95815 1.20025 0.80762 0.78721 0.90190 1.90723 1.49131 1.48713 1.51620 1.48096 1.27835 1.50015 1.08107 1.21923 0.91568 0.98233 0.90082 1.22669 0.93184 1.01929 1.01669 1.20168 0.84223 0.97329 0.90417 0.92397 1.42776 1.01066 1.20485 1.74339 1.19043 0.85474 0.99068 1.33708 0.89184 1.24658 0.95606 0.97642 1.01075 1.69695 0.99418 1.35960 1.52984 0.86597 0.77583 0.84956 0.79648 1.21063 1.21795 1.20366 1.21719 0.93899 1.00957 0.96936 0.91285 1.21665 1.02081 1.01427 0.94314 1.21592 0.96167 1.01484 0.80682 1.84384 1.17710 1.36623 1.69379 0.89634 0.90117 0.88745 0.79691 0.89823 0.88282 0.89630 0.89384 0.90867 0.90565 0.89905 0.92176 0.80596 0.93054 0.91430 0.93496 0.92489 0.89224 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.43 36.01 0.38 0.08 16 2 C -0.04 -0.36 7.39 -35.69 -0.26 -0.62 16 3 C -0.04 -0.44 11.80 -17.77 -0.21 -0.65 16 4 N -0.46 -5.78 11.30 -11.10 -0.13 -5.91 16 5 C 0.19 2.19 7.97 -12.94 -0.10 2.09 16 6 C 0.16 1.44 6.56 36.01 0.24 1.67 16 7 O -0.36 -4.47 9.86 -55.14 -0.54 -5.01 16 8 C 0.05 0.46 4.76 36.01 0.17 0.64 16 9 C 0.52 7.23 7.77 -10.99 -0.09 7.15 16 10 O -0.53 -9.64 15.91 -14.36 -0.23 -9.87 16 11 N -0.61 -7.80 2.98 -173.05 -0.52 -8.32 16 12 C 0.11 1.16 6.34 -3.71 -0.02 1.14 16 13 C -0.15 -2.28 5.66 -26.61 -0.15 -2.43 16 14 C 0.19 3.26 2.20 -67.89 -0.15 3.11 16 15 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 16 N -0.74 -16.37 4.21 -53.38 -0.22 -16.59 16 17 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 18 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 21 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 25 C -0.12 -1.74 2.44 -90.74 -0.22 -1.96 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 C -0.14 -2.03 9.03 37.16 0.34 -1.70 16 28 C 0.12 1.67 5.69 -3.95 -0.02 1.65 16 29 O -0.19 -2.18 10.77 5.38 0.06 -2.12 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.19 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.58 7.94 -51.93 -0.41 0.17 16 37 H 0.09 0.70 7.70 -51.93 -0.40 0.30 16 38 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.36 8.03 5.36 -40.82 -0.22 7.81 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 1.14 7.36 -51.93 -0.38 0.76 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 1.30 7.01 -51.93 -0.36 0.93 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -36.64 392.93 -7.55 -44.19 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.59 Total: 4.84 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.36 Total: 3.64 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.09 Total: -58.49 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.71 Total: -17.00 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.64 -7.55 -44.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482424423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.690 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds